Contig 003806:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013E10Sequence251003806 (3)ref|XP_002532890.1|3e-25BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative 700011248 (2)ref|XP_009630581.1|6e-70PREDICTED: protein NSP-INTERACTING KINASE 1 [Nicotiana tomentosiformis]
JMSF038H20Sequence614003806 (3)ref|XP_011099082.1|4e-35PREDICTED: protein NSP-INTERACTING KINASE 1-like isoform X2 [Sesamum indicum]758018288ref|XP_009803320.1|4e-67PREDICTED: protein NSP-INTERACTING KINASE 1-like isoform X1 [Nicotiana sylvestr
JMSF052E11Sequence679003806 (3)ref|XP_011099082.1|5e-94PREDICTED: protein NSP-INTERACTING KINASE 1-like isoform X2 [Sesamum indicum]971017290ref|XP_004232118.1|1e-154PREDICTED: protein NSP-INTERACTING KINASE 1 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF052E11+                                                                  GGAAA
                      ____________________________________________________________
consensus                                                                    GGAAA
 
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JMSF052E11+           CCTTGGCACAGGTCCACTCAAGTTATTGTATGATAAATCCACGAGAGAAAGCTGAGTCAT
                      ____________________________________________________________
consensus             CCTTGGCACAGGTCCACTCAAGTTATTGTATGATAAATCCACGAGAGAAAGCTGAGTCAT
 
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JMSF052E11+           GTTTGTCAGCGACGCTGGGATTTCCCCCCACAGGCTGTTATTGTTGAGCCTCAAGTACTT
                      ____________________________________________________________
consensus             GTTTGTCAGCGACGCTGGGATTTCCCCCCACAGGCTGTTATTGTTGAGCCTCAAGTACTT
 
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JMSF052E11+           GAGGCCTTTCAAATGTCCCAAAGGAGGGATTTCACCAGTGAAGATGTTATTAGAAAGATC
                      ____________________________________________________________
consensus             GAGGCCTTTCAAATGTCCCAAAGGAGGGATTTCACCAGTGAAGATGTTATTAGAAAGATC
 
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JMSF052E11+           GAGTGTGTGAAGATTCGAGAGGCGATTAATCTCTACCGGGATTGGTCCTGTTATGTTGTT
                      ____________________________________________________________
consensus             GAGTGTGTGAAGATTCGAGAGGCGATTAATCTCTACCGGGATTGGTCCTGTTATGTTGTT
 
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JMSF052E11+           GCTCTGCAAGAGTATGATCTGGAGGTTTGTCAAATTCCCAATGCTTGGAGAAAGAGTTCC
                      ____________________________________________________________
consensus             GCTCTGCAAGAGTATGATCTGGAGGTTTGTCAAATTCCCAATGCTTGGAGAAAGAGTTCC
 
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JMSF052E11+           AGACAAATACTGGCTGGGAGTTCCCAGTCCAATAACCAGACTCTCTGCAGAACAAGTGAC
JMSF013E10+                                                                  GTGAC
JMSF038H20+                                   CAGTCCAATAACCAGACTNTCTGCAGAACAAGTGAC
                      ____________________________________________________________
consensus             AGACAAATACTGGCTGGGAGTTCCCAGTCCAATAACCAGACTCTCTGCAGAACAAGTGAC
 
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JMSF052E11+           CATAGTCCAGCTACATGGATCAACAGCATCCCCATCCCAATTATCAAGAACACCATGGGG
JMSF013E10+           CATGGACCAGCTACATGGATCAACAGCATCCCCATCCCAGTTATCAAGAACCCCATGAGG
JMSF038H20+           CATAGTCCAGCTACATGGATCAACAGCATCCCCATCCCAATTATCAAGAACACCATGGGG
                      ____________________________________________________________
consensus             CATAGTCCAGCTACATGGATCAACAGCATCCCCATCCCAATTATCAAGAACACCATGGGG
 
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JMSF052E11+           ATCCTTTAGAGCAGCTTTTATCCCCATTAAAGCTTGCACTTCAAAGTTCACACCTTTGGG
JMSF013E10+           ATCTTTCAGAGAAGCCTTTATGCCCATTAAAGCTTGCACTTCAAAGTTTACACCTTTAGG
JMSF038H20+           ATCCTTTAGAGCAGCTTTTATCCCCATTAAAGCTTGCACTTCAAAGTTCACACCTTTGGG
                      ____________________________________________________________
consensus             ATCCTTTAGAGCAGCTTTTATCCCCATTAAAGCTTGCACTTCAAAGTTCACACCTTTGGG
 
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JMSF052E11+           GGACAGCACACTAACTGCAGAGCCCAAAAAACACAGAAATAGAAATCCCAGAGACCAATA
JMSF013E10+           GGATAGCA                                                    
JMSF038H20+           GGACAGCACACTAACTGCAGAGCCCAAAAAACACAGAAATAGAAATCCCAGAGACCAATA
                      ____________________________________________________________
consensus             GGACAGCACACTAACTGCAGAGCCCAAAAAACACAGAAATAGAAATCCCAGAGACCAATA
 
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JMSF052E11+           CACACCCTTTGCTTCTCTCCTCATCTCCACTCAAATGATTATCCAGAAAACAGAAGCTAC
JMSF038H20+           CACACCCTTTGCTTCTCTCCTCATCTCCACTCAAATGATTATCCAGAAAACAGAAGCTAC
                      ____________________________________________________________
consensus             CACACCCTTTGCTTCTCTCCTCATCTCCACTCAAATGATTATCCAGAAAACAGAAGCTAC
 
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JMSF052E11+           AGTGTTATGAACTCAGTGAGTCATCCCTCCTTCAAATGAGGGTTTTGAGGAATCTGGGAG
JMSF038H20+           AGTGTTATGAACTCAGTGAGTCATCCCTCCTTCAAATGAGGGTTTTGAGGAATCTGGGAG
                      ____________________________________________________________
consensus             AGTGTTATGAACTCAGTGAGTCATCCCTCCTTCAAATGAGGGTTTTGAGGAATCTGGGAG
 
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JMSF052E11+           TCTCAACAATCT                                                
JMSF038H20+           TCTCAACAATCTTAGCATTCTAAGCATGTCAGTAACTCAATTATACTGCTATCTTTATCC
                      ____________________________________________________________
consensus             TCTCAACAATCTTAGCATTCTAAGCATGTCAGTAACTCAATTATACTGCTATCTTTATCC