Contig 003802:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN005D22Sequence526003802 (9)
JMFN013K20Sequence522003802 (9)
JMFN019J03Sequence532003802 (9)
JMFN030O01Sequence500003802 (9)
JMFN040K18Sequence530003802 (9)
JMSF036C14Sequence511003802 (9)464003802 (9)
JMSF038D13Sequence551003802 (9)509003802 (9)

Alignment

This contig is upended


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JMFN013K20+                                                          AATTATATTTTTA
JMFN005D22+                                                                      A
JMFN030O01+                                                                      A
JMFN019J03+                                                                      A
                      ____________________________________________________________
consensus                                                            AATTATATTTTTA
 
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JMFN013K20+           GGAGAAAACAAATGATTTATTAGGAGATAATCATATCATACATAGGAACCCTTAGTACAT
rJMSF036C14-                                                      GGAACCCTTAGTACAT
JMFN040K18+           GGAGAAAACAAATGATTTATTAGGAGATAATCATATCATACATAGGAACCCTTAGTACAT
JMFN005D22+           GGAGAAAACAAATGATTTATTAGGAGATAATCATATCATACATAGGAACCCTTAGTACAT
JMFN030O01+           GGAGAAAACAAATGATTTATTAGGAGATAATCATATCATACATAGGAACCCTTAGTACAT
JMFN019J03+           GGAGAAAACAAATGATTTATTAGGAGATAATCATATCATACATAGGAACCCTTAGTACAT
rJMSF038D13-                                                      GGAACCCTTAGTACAT
                      ____________________________________________________________
consensus             GGAGAAAACAAATGATTTATTAGGAGATAATCATATCATACATAGGAACCCTTAGTACAT
 
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JMFN013K20+           ATGATTAGTCTTTATGAAGCAGACGCCATGACTGGGGAATTGAAATAGCATTGCAGATAG
rJMSF036C14-          ATGATTAGTCTTTATGAAGCAGACGCCATGACTGGGGAATTGAAATAGCATTGCAGATAG
JMFN040K18+           ATGATTAGTCTTTATGAAGCAGACGCCATGACTGGGGAATTGAAATAGCATTGCAGATAG
JMFN005D22+           ATGATTAGTCTTTATGAAGCAGACGCCATGACTGGGGAATTGAAATAGCATTGCAGATAG
JMFN030O01+           ATGATTAGTCTTTATGAAGCAGACGCCATGACTGGGGAATTGAAATAGCATTGCAGATAG
JMSF036C14+                                         ACTGGGGAATTGAAATAGCATTGCAGATAG
JMFN019J03+           ATGATTAGTCTTTATGAAGCAGACGCCATGACTGGGGAATTGAAATAGCATTGCAGATAG
rJMSF038D13-          ATGATTAGTCTTTATGAAGCAGACGCCATGACTGGGGAATTGAAATAGCATTGCAGATAG
JMSF038D13+                                         ACTGGGGAATTGAAATAGCATTGCAGATAG
                      ____________________________________________________________
consensus             ATGATTAGTCTTTATGAAGCAGACGCCATGACTGGGGAATTGAAATAGCATTGCAGATAG
 
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JMFN013K20+           ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
rJMSF036C14-          ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
JMFN040K18+           ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
JMFN005D22+           ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
JMFN030O01+           ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
JMSF036C14+           ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
JMFN019J03+           ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
rJMSF038D13-          ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
JMSF038D13+           ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
                      ____________________________________________________________
consensus             ATCACGCACAAATGCCGGGTAAAATTATTTTCTCGCAACCAGCTGTTACTGAACAGCCTC
 
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JMFN013K20+           TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
rJMSF036C14-          TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
JMFN040K18+           TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
JMFN005D22+           TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACATTTCGGTTTTGTTTTCTTGTCCT
JMFN030O01+           TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
JMSF036C14+           TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
JMFN019J03+           TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
rJMSF038D13-          TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
JMSF038D13+           TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
                      ____________________________________________________________
consensus             TGCAATCAGCGTCGGTTTTACATTTCCCACACCCACCTTTCGGTTTTGTTTTCTTGTCCT
 
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JMFN013K20+           CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
rJMSF036C14-          CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
JMFN040K18+           CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
JMFN005D22+           CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
JMFN030O01+           CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
JMSF036C14+           CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
JMFN019J03+           CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
rJMSF038D13-          CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
JMSF038D13+           CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
                      ____________________________________________________________
consensus             CTGTTGTCGATGCCACACCACCCAAAGTGGGACCAACTCCAGCACAATGACCGACTTGAG
 
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JMFN013K20+           ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
rJMSF036C14-          ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
JMFN040K18+           ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
JMFN005D22+           ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
JMFN030O01+           ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
JMSF036C14+           ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
JMFN019J03+           ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
rJMSF038D13-          ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
JMSF038D13+           ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
                      ____________________________________________________________
consensus             ATCCAGAGATTTTGTTGATGCAGAAATTGGTGGAGTAAGCGGTGTTAGCTTTGCAGTCAT
 
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JMFN013K20+           GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
rJMSF036C14-          GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
JMFN040K18+           GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
JMFN005D22+           GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
JMFN030O01+           GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
JMSF036C14+           GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
JMFN019J03+           GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
rJMSF038D13-          GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
JMSF038D13+           GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
                      ____________________________________________________________
consensus             GGTGAGACTTGCAAAGCTGCCCAGTCATGAACAACTGCTTCTTGTTTGGTCCTACGGTTA
 
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JMFN013K20+           TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
rJMSF036C14-          TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
JMFN040K18+           TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
JMFN005D22+           TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
JMFN030O01+           TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAAACAG
JMSF036C14+           TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
JMFN019J03+           TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
rJMSF038D13-          TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
JMSF038D13+           TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
                      ____________________________________________________________
consensus             TTTGTGCCGTCAGACTTGACGGCAACAAAGATGCAGCCATGAAAAGAGCTAGGAAGACAG
 
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JMFN013K20+           CTATCTTGGTTGGAACTCTCTCCATTATC                               
rJMSF036C14-          CTATCTTGGTTGGAACTC                                          
JMFN040K18+           CTATCTTGGTTGGAACTCTCTCCATTATCTCCAGTTTAAGCCTGGCCTTA          
JMFN005D22+           CTATCTTGGTTGGAACTCTCTCCATTATCTCCAGTTTAAGCCTGG               
JMFN030O01+           CTATCTTGGTTGGAACTCT                                         
JMSF036C14+           CTATCTTGGTTGGAACTC                                          
JMFN019J03+           CTATCTTGGTTGGAACTCTCTCCATTATCTCCAGTTTAAGCCTGGCCTTAC         
rJMSF038D13-          CTATCTTGGTTGGAACTCTCTCCATTATCTCCAGTTTAAGCCTGGCCTTACTTGAATCT 
JMSF038D13+           CTATCTTGGTTGGAACTCTCTCCATTATCTCCAGTTTAAGCCTGGCCTTACTTGAATCTC
                      ____________________________________________________________
consensus             CTATCTTGGTTGGAACTCTCTCCATTATCTCCAGTTTAAGCCTGGCCTTACTTGAATCTC