Contig 003801:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008H10Sequence453003801 (4)emb|CDP17200.1|4e-59unnamed protein product [Coffea canephora]774003801 (4)ref|XP_004233565.1|3e-93PREDICTED: rac-like GTP-binding protein ARAC1 [Solanum lycopersicum] ref|XP_0063
JMSF038A05Sequence649003801 (4)emb|CDY29201.1|5e-97BnaA06g25560D [Brassica napus]886017226ref|XP_004233565.1|6e-95PREDICTED: rac-like GTP-binding protein ARAC1 [Solanum lycopersicum] ref|XP_0063
JMSF042O07Sequence648003801 (4)ref|XP_009121076.1|6e-84PREDICTED: rac-like GTP-binding protein ARAC1 [Brassica rapa]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF008H10- AAAGCAACATCACTG
                      ____________________________________________________________
consensus AAAGCAACATCACTG
 
. : . : . : . : . : . :
rJMSF008H10- GTGCAGATTTGTTTCCCTAAATTGTTTCATTCATTACAGAAAGCAAATCAAAAGGGAGAG
                      ____________________________________________________________
consensus GTGCAGATTTGTTTCCCTAAATTGTTTCATTCATTACAGAAAGCAAATCAAAAGGGAGAG
 
. : . : . : . : . : . :
rJMSF008H10- GAGGAGGGCACAAGAGAGTGGCCTACAAAGTTGCTGGAGACCACAACAAAGAGACAAGAG
                      ____________________________________________________________
consensus GAGGAGGGCACAAGAGAGTGGCCTACAAAGTTGCTGGAGACCACAACAAAGAGACAAGAG
 
. : . : . : . : . : . :
rJMSF008H10- CCCAGCCACCTGACATTAGAACCTTCTTCCTCTTTCCTCTGAGACATAGGAAAGAGGAGA
                      ____________________________________________________________
consensus CCCAGCCACCTGACATTAGAACCTTCTTCCTCTTTCCTCTGAGACATAGGAAAGAGGAGA
 
. : . : . : . : . : . :
rJMSF008H10- AGGCAGGAAATGAGGGATACAGAAGAGGAGGAGAGTAGTGGTAAGTGTGATGGTATCCAC
                      ____________________________________________________________
consensus AGGCAGGAAATGAGGGATACAGAAGAGGAGGAGAGTAGTGGTAAGTGTGATGGTATCCAC
 
. : . : . : . : . : . :
rJMSF008H10- AGCCCTAATGGCTAATGCTGATCACAAAATAGAGCAAGACTTCTGAGTCTTGGCCTTCTT
                      ____________________________________________________________
consensus AGCCCTAATGGCTAATGCTGATCACAAAATAGAGCAAGACTTCTGAGTCTTGGCCTTCTT
 
. : . : . : . : . : . :
rJMSF008H10- TTTCTTCGCCTTGGGTGGTGCGAGCACAACTTTAATCGCAGCATCAAACACTCCTTTAAC
                      ____________________________________________________________
consensus TTTCTTCGCCTTGGGTGGTGCGAGCACAACTTTAATCGCAGCATCAAACACTCCTTTAAC
 
. : . : . : . : . : . :
rJMSF008H10- ATTCTCTTGTGTTTTTGAACTGCATTCAATGTAGGCAGGTGCAGCAATCGTTTTCTTGAG
                      ____________________________________________________________
consensus ATTCTCTTGTGTTTTTGAACTGCATTCAATGTAGGCAGGTGCAGCAATCGTTTTCTTGAG
 
. : . : . : . : . : . :
rJMSF008H10- CTCCTCTCCCTGAGCAGTGGTAATTGGCACAGCACCAGGATGGTCAACAAAGAACTGCTT
JMSF042O07+ TGAGCAGTGGTAATTGGCACAGCACCAGGATGGTCAACAAAGAACTGCTT
JMSF038A05+ TGAGCAGTGGTAATTGGCACAGCACCAGGATGGTCAACAAAGAACTGCTT
                      ____________________________________________________________
consensus CTCCTCTCCCTGAGCAGTGGTAATTGGCACAGCACCAGGATGGTCAACAAAGAACTGCTT
 
. : . : . : . : . : . :
rJMSF008H10- ATCATCCCGAAGATCAAGTTTAGTTCCAACAAGGACTATTGGAACACCAGGAGCATAATG
JMSF042O07+ ATCATCCCGAAGATCAAGTTTAGTTCCAACAAGGACTATTGGAACACCAGGAGCATAATG
JMSF038A05+ ATCATCCCGAAGATCAAGTTTAGTTCCAACAAGGACTATTGGAACACCAGGAGCATAATG
                      ____________________________________________________________
consensus ATCATCCCGAAGATCAAGTTTAGTTCCAACAAGGACTATTGGAACACCAGGAGCATAATG
 
. : . : . : . : . : . :
rJMSF008H10- TGTCAACTCAGGAATCCACTTTTTGGAAACATTCTCATAGCTGGCTTTACTAATGAGAGA
JMSF008H10+ CATAGCTGGCTTTACTAATGAGAGA
JMSF042O07+ TGTCAACTCAGGAATCCACTTTTTGGAAACATTCTCATAGCTGGCTTTACTAATGAGAGA
JMSF038A05+ TGTCAACTCAGGAATCCACTTTTTGGAAACATTCTCATAGCTGGCTTTACTAATGAGAGA
                      ____________________________________________________________
consensus TGTCAACTCAGGAATCCACTTTTTGGAAACATTCTCATAGCTGGCTTTACTAATGAGAGA
 
. : . : . : . : . : . :
rJMSF008H10- AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTCTTAGTCTATTATAATC
JMSF008H10+ AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTCTTAGTCTATTATAATC
JMSF042O07+ AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTTTTAGTCTATTATAATC
JMSF038A05+ AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTCTTAGTCTATTATAATC
                      ____________________________________________________________
consensus AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTCTTAGTCTATTATAATC
 
. : . : . : . : . : . :
rJMSF008H10- CTCCTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
JMSF008H10+ CTCCTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
JMSF042O07+ CTCNTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
JMSF038A05+ CTCCTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
                      ____________________________________________________________
consensus CTCCTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
 
. : . : . : . : . : . :
rJMSF008H10- GGCACTGAAANTGTCGAATACAGTTGGAACATAATCCGT
JMSF008H10+ GGCACTGAAATTGTCGAATACAGTTGGAACATAATCCGTGGGGAAAGTGTTGCTGGTGTA
JMSF042O07+ GGCACTGAAATTGTNGAATACAGTTGGAACATAATCCGTGGGGAAAGTGTNGCTGGTGTA
JMSF038A05+ GGCACTGAAATTGTCGAATACAGTTGGAACATAATCCGTGGGGAAAGTGTTGCTGGTGTA
                      ____________________________________________________________
consensus GGCACTGAAATTGTCGAATACAGTTGGAACATAATCCGTGGGGAAAGTGTTGCTGGTGTA
 
. : . : . : . : . : . :
JMSF008H10+ TGAAATAAGGAGGCAGGTCTTGCCAACAGCGCCATCACCCACCGTGACGCACTTGATGAA
JMSF042O07+ TGAAATAAGGAGGCAGGTCTTGCCAACAGCGCCATCACCCACCGTGACGCACTTGATGAA
JMSF038A05+ TGAAATAAGGAGGCAGGTCTTGCCAACAGCGCCATCACCCACCGTGACGCACTTGATGAA
                      ____________________________________________________________
consensus TGAAATAAGGAGGCAGGTCTTGCCAACAGCGCCATCACCCACCGTGACGCACTTGATGAA
 
. : . : . : . : . : . :
JMSF008H10+ CCTAGAAGCGCTCATTCTGAAGGCCTCAGATCTTCCTCCTCCTCAGAAGACCTGATTTTT
JMSF042O07+ CCTAGAAGCGCTCATTNTGAAGGCCTCAGATCTTCCTCCTCCTCAGAAGACCTGATTTTT
JMSF038A05+ CCTAGAAGCGCTCATTCTGAAGGCCTCAGATCTTCCTCCTCCTCAGAAGACCTGATTTTT
                      ____________________________________________________________
consensus CCTAGAAGCGCTCATTCTGAAGGCCTCAGATCTTCCTCCTCCTCAGAAGACCTGATTTTT
 
. : . : . : . : . : . :
JMSF008H10+ GCTTCTATAGCCACTCCAGTTCCCGGGGAAATGCCGCACGGAGGAAACAGAACCAACAAG
JMSF042O07+ GCTTCTATAGCCACTCCAGTTCCCGGGGAAATGCCGCACGGAGGAAACAGAACCAACAAG
JMSF038A05+ GCTTCTATAGCCACTCCAGTTCCCGGGGAAATGCCGCACGGAGGAAACAGAACCAACAAG
                      ____________________________________________________________
consensus GCTTCTATAGCCACTCCAGTTCCCGGGGAAATGCCGCACGGAGGAAACAGAACCAACAAG
 
. : . : . : . : . : . :
JMSF008H10+ GAGCGTCGCCGGGCTATAACCCTAACCCTTATTTTCGCCGTGAAATATTGCCTTTGAAT
JMSF042O07+ GAGCGTCGCCGGGCTATAACCCTAACCCTTATTTTCGCCGTGAAATATTGCCTTTGAAT-
JMSF038A05+ GAGCGTCGCCGGGCTATAACCCT-ACCCTTATTTTCGCCGTGAAATATTGCCTTTGAATC
                      ____________________________________________________________
consensus GAGCGTCGCCGGGCTATAACCCTAACCCTTATTTTCGCCGTGAAATATTGCCTTTGAATC
 
. : . : . : . : . : . :
JMSF042O07+ GTTCGNTGAAAGGTGAGAGAGACGACCGATCCAACAAGCCACCCACCAACCAATCT
JMSF038A05+ GTTCGCTGAAAGGTGAGAGAGACGACCGATCCAACAAGCCACCCACCAACCAATCTTTCC
                      ____________________________________________________________
consensus GTTCGCTGAAAGGTGAGAGAGACGACCGATCCAACAAGCCACCCACCAACCAATCTTTCC