Contig 003801:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008H10Sequence453003801 (4)emb|CDP17200.1|4e-59unnamed protein product [Coffea canephora]774003801 (4)ref|XP_004233565.1|3e-93PREDICTED: rac-like GTP-binding protein ARAC1 [Solanum lycopersicum] ref|XP_0063
JMSF038A05Sequence649003801 (4)emb|CDY29201.1|5e-97BnaA06g25560D [Brassica napus]886017226ref|XP_004233565.1|6e-95PREDICTED: rac-like GTP-binding protein ARAC1 [Solanum lycopersicum] ref|XP_0063
JMSF042O07Sequence648003801 (4)ref|XP_009121076.1|6e-84PREDICTED: rac-like GTP-binding protein ARAC1 [Brassica rapa]

Alignment

This contig is upended


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rJMSF008H10-                                                       AAAGCAACATCACTG
                      ____________________________________________________________
consensus                                                          AAAGCAACATCACTG
 
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rJMSF008H10-          GTGCAGATTTGTTTCCCTAAATTGTTTCATTCATTACAGAAAGCAAATCAAAAGGGAGAG
                      ____________________________________________________________
consensus             GTGCAGATTTGTTTCCCTAAATTGTTTCATTCATTACAGAAAGCAAATCAAAAGGGAGAG
 
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rJMSF008H10-          GAGGAGGGCACAAGAGAGTGGCCTACAAAGTTGCTGGAGACCACAACAAAGAGACAAGAG
                      ____________________________________________________________
consensus             GAGGAGGGCACAAGAGAGTGGCCTACAAAGTTGCTGGAGACCACAACAAAGAGACAAGAG
 
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rJMSF008H10-          CCCAGCCACCTGACATTAGAACCTTCTTCCTCTTTCCTCTGAGACATAGGAAAGAGGAGA
                      ____________________________________________________________
consensus             CCCAGCCACCTGACATTAGAACCTTCTTCCTCTTTCCTCTGAGACATAGGAAAGAGGAGA
 
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rJMSF008H10-          AGGCAGGAAATGAGGGATACAGAAGAGGAGGAGAGTAGTGGTAAGTGTGATGGTATCCAC
                      ____________________________________________________________
consensus             AGGCAGGAAATGAGGGATACAGAAGAGGAGGAGAGTAGTGGTAAGTGTGATGGTATCCAC
 
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rJMSF008H10-          AGCCCTAATGGCTAATGCTGATCACAAAATAGAGCAAGACTTCTGAGTCTTGGCCTTCTT
                      ____________________________________________________________
consensus             AGCCCTAATGGCTAATGCTGATCACAAAATAGAGCAAGACTTCTGAGTCTTGGCCTTCTT
 
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rJMSF008H10-          TTTCTTCGCCTTGGGTGGTGCGAGCACAACTTTAATCGCAGCATCAAACACTCCTTTAAC
                      ____________________________________________________________
consensus             TTTCTTCGCCTTGGGTGGTGCGAGCACAACTTTAATCGCAGCATCAAACACTCCTTTAAC
 
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rJMSF008H10-          ATTCTCTTGTGTTTTTGAACTGCATTCAATGTAGGCAGGTGCAGCAATCGTTTTCTTGAG
                      ____________________________________________________________
consensus             ATTCTCTTGTGTTTTTGAACTGCATTCAATGTAGGCAGGTGCAGCAATCGTTTTCTTGAG
 
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rJMSF008H10-          CTCCTCTCCCTGAGCAGTGGTAATTGGCACAGCACCAGGATGGTCAACAAAGAACTGCTT
JMSF042O07+                     TGAGCAGTGGTAATTGGCACAGCACCAGGATGGTCAACAAAGAACTGCTT
JMSF038A05+                     TGAGCAGTGGTAATTGGCACAGCACCAGGATGGTCAACAAAGAACTGCTT
                      ____________________________________________________________
consensus             CTCCTCTCCCTGAGCAGTGGTAATTGGCACAGCACCAGGATGGTCAACAAAGAACTGCTT
 
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rJMSF008H10-          ATCATCCCGAAGATCAAGTTTAGTTCCAACAAGGACTATTGGAACACCAGGAGCATAATG
JMSF042O07+           ATCATCCCGAAGATCAAGTTTAGTTCCAACAAGGACTATTGGAACACCAGGAGCATAATG
JMSF038A05+           ATCATCCCGAAGATCAAGTTTAGTTCCAACAAGGACTATTGGAACACCAGGAGCATAATG
                      ____________________________________________________________
consensus             ATCATCCCGAAGATCAAGTTTAGTTCCAACAAGGACTATTGGAACACCAGGAGCATAATG
 
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rJMSF008H10-          TGTCAACTCAGGAATCCACTTTTTGGAAACATTCTCATAGCTGGCTTTACTAATGAGAGA
JMSF008H10+                                              CATAGCTGGCTTTACTAATGAGAGA
JMSF042O07+           TGTCAACTCAGGAATCCACTTTTTGGAAACATTCTCATAGCTGGCTTTACTAATGAGAGA
JMSF038A05+           TGTCAACTCAGGAATCCACTTTTTGGAAACATTCTCATAGCTGGCTTTACTAATGAGAGA
                      ____________________________________________________________
consensus             TGTCAACTCAGGAATCCACTTTTTGGAAACATTCTCATAGCTGGCTTTACTAATGAGAGA
 
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rJMSF008H10-          AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTCTTAGTCTATTATAATC
JMSF008H10+           AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTCTTAGTCTATTATAATC
JMSF042O07+           AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTTTTAGTCTATTATAATC
JMSF038A05+           AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTCTTAGTCTATTATAATC
                      ____________________________________________________________
consensus             AAATGCCAAAATGAAAACATCAGCTCCACGGTAACTCAGAGGTCTTAGTCTATTATAATC
 
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rJMSF008H10-          CTCCTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
JMSF008H10+           CTCCTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
JMSF042O07+           CTCNTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
JMSF038A05+           CTCCTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
                      ____________________________________________________________
consensus             CTCCTGGCCAGCAGTATCCCACAAACCAAGGTTAACGGTACTCCCATTGACAACCACATT
 
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rJMSF008H10-          GGCACTGAAANTGTCGAATACAGTTGGAACATAATCCGT                     
JMSF008H10+           GGCACTGAAATTGTCGAATACAGTTGGAACATAATCCGTGGGGAAAGTGTTGCTGGTGTA
JMSF042O07+           GGCACTGAAATTGTNGAATACAGTTGGAACATAATCCGTGGGGAAAGTGTNGCTGGTGTA
JMSF038A05+           GGCACTGAAATTGTCGAATACAGTTGGAACATAATCCGTGGGGAAAGTGTTGCTGGTGTA
                      ____________________________________________________________
consensus             GGCACTGAAATTGTCGAATACAGTTGGAACATAATCCGTGGGGAAAGTGTTGCTGGTGTA
 
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JMSF008H10+           TGAAATAAGGAGGCAGGTCTTGCCAACAGCGCCATCACCCACCGTGACGCACTTGATGAA
JMSF042O07+           TGAAATAAGGAGGCAGGTCTTGCCAACAGCGCCATCACCCACCGTGACGCACTTGATGAA
JMSF038A05+           TGAAATAAGGAGGCAGGTCTTGCCAACAGCGCCATCACCCACCGTGACGCACTTGATGAA
                      ____________________________________________________________
consensus             TGAAATAAGGAGGCAGGTCTTGCCAACAGCGCCATCACCCACCGTGACGCACTTGATGAA
 
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JMSF008H10+           CCTAGAAGCGCTCATTCTGAAGGCCTCAGATCTTCCTCCTCCTCAGAAGACCTGATTTTT
JMSF042O07+           CCTAGAAGCGCTCATTNTGAAGGCCTCAGATCTTCCTCCTCCTCAGAAGACCTGATTTTT
JMSF038A05+           CCTAGAAGCGCTCATTCTGAAGGCCTCAGATCTTCCTCCTCCTCAGAAGACCTGATTTTT
                      ____________________________________________________________
consensus             CCTAGAAGCGCTCATTCTGAAGGCCTCAGATCTTCCTCCTCCTCAGAAGACCTGATTTTT
 
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JMSF008H10+           GCTTCTATAGCCACTCCAGTTCCCGGGGAAATGCCGCACGGAGGAAACAGAACCAACAAG
JMSF042O07+           GCTTCTATAGCCACTCCAGTTCCCGGGGAAATGCCGCACGGAGGAAACAGAACCAACAAG
JMSF038A05+           GCTTCTATAGCCACTCCAGTTCCCGGGGAAATGCCGCACGGAGGAAACAGAACCAACAAG
                      ____________________________________________________________
consensus             GCTTCTATAGCCACTCCAGTTCCCGGGGAAATGCCGCACGGAGGAAACAGAACCAACAAG
 
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JMSF008H10+           GAGCGTCGCCGGGCTATAACCCTAACCCTTATTTTCGCCGTGAAATATTGCCTTTGAAT 
JMSF042O07+           GAGCGTCGCCGGGCTATAACCCTAACCCTTATTTTCGCCGTGAAATATTGCCTTTGAAT-
JMSF038A05+           GAGCGTCGCCGGGCTATAACCCT-ACCCTTATTTTCGCCGTGAAATATTGCCTTTGAATC
                      ____________________________________________________________
consensus             GAGCGTCGCCGGGCTATAACCCTAACCCTTATTTTCGCCGTGAAATATTGCCTTTGAATC
 
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JMSF042O07+           GTTCGNTGAAAGGTGAGAGAGACGACCGATCCAACAAGCCACCCACCAACCAATCT    
JMSF038A05+           GTTCGCTGAAAGGTGAGAGAGACGACCGATCCAACAAGCCACCCACCAACCAATCTTTCC
                      ____________________________________________________________
consensus             GTTCGCTGAAAGGTGAGAGAGACGACCGATCCAACAAGCCACCCACCAACCAATCTTTCC