Contig 003799:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007O06Sequence307003799 (5)ref|XP_009781148.1|3e-15PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]769011250 (3)ref|XP_009588345.1|4e-90PREDICTED: cellulose synthase-like protein H1 [Nicotiana tomentosiformis]
JMSF018E17Sequence489003799 (5)ref|XP_009781148.1|2e-71PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]727007667 (3)ref|XP_009605434.1|1e-74PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Nicotiana
JMSF037O06Sequence635003799 (5)ref|XP_009781148.1|2e-80PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]687011250 (3)ref|XP_009781147.1|2e-75PREDICTED: cellulose synthase-like protein H1 isoform X1 [Nicotiana sylvestris]
JMSF045E12Sequence757003799 (5)ref|XP_009781148.1|9e-113PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]
JMSF048K01Sequence700003799 (5)ref|XP_009781148.1|2e-93PREDICTED: cellulose synthase-like protein B6 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045E12+                                                                    AGC
                      ____________________________________________________________
consensus                                                                      AGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045E12+           TTTGAAATGATGGGGATGCTTTGGACGCTTCTCTCTGGAGATATATATTAAATGAGGCAC
                      ____________________________________________________________
consensus             TTTGAAATGATGGGGATGCTTTGGACGCTTCTCTCTGGAGATATATATTAAATGAGGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+                                                                     TC
JMSF045E12+           ACCATCACTTTCCTTGTGCTCACAAATCACCTTTATGATGGTGGGATGGTCTCTCCGATC
                      ____________________________________________________________
consensus             ACCATCACTTTCCTTGTGCTCACAAATCACCTTTATGATGGTGGGATGGTCTCTCCGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           AATATTTGCAAAAACTGAAAACTCCCCAGTAAGTTGTTGTGGCAAAGAATCTTGACTTGC
JMSF045E12+           AATATTTGCAAAATCTGAAAGCTCGCCAACAAGGTCATGTGGCATCGACTCTTGACTTAC
                      ____________________________________________________________
consensus             AATATTTGCAAAATCTGAAAGCTCGCCAGTAAGTTGTTGTGGCATCGACTCTTGACTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           TTCTTCTATCTTTCTACAGAGCTTTGAATATTCGTCCTTCATTTTCTTCCATTCATGTTG
JMSF045E12+           TTCATCAATCTTTTCACAGAGCTTTGAATATTCATCCTTCATTTTGTTCCACTCATGTTG
JMSF048K01+                          ACAGAGCTTTGAATATTCATCCTTCATTTTGTTCCACTCATGTTG
                      ____________________________________________________________
consensus             TTCTTCTATCTTTTTACAGAGCTTTGAATATTCATCCTTCATTTTGTTCCACTCATGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           GAAGTCTAAGGAGCTATCTGGTTGGAATGTTTGGTTGGTACTGTTAAAGTATCGAAATGG
JMSF045E12+           GAAGTCTAAGGAGCTATCTTGTGGGAAAACTGGGTTGGTACTGTTAAAGTGTCGAAACGG
JMSF048K01+           GAAGTCTANGGAGCTATCTTGTGGGAAAACTGGGTTGGTACTGTTAAAGTGTCGAAACGG
JMSF037O06+                                           GGTTGGTACTGTTAAAGTGTCGAAACGG
                      ____________________________________________________________
consensus             GAAGTCTAAGGAGCTATCTTGTGGGAAAACTGGGTTGGTACTGTTAAAGTGTCGAAACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           AGTTCTAACGGCAATGTTATACTTCTTACAAAAGGGAACCCAAAGCTTAGCGAACTTGGA
JMSF045E12+           AGCTCTAACGGCGACGTTATACTTCTTACAAAAGGGAACCCAAAGCTTAGCGAACTTGGA
JMSF048K01+           AGCTCTAACGGCGACGTTATACTTCTTACAAAAGGGAACCCAAAGCTTAGCGAACTTGGA
JMSF037O06+           AGCTCTAACGGCGACGTTATACTTCTTACAAAAGGGAACCCAAAGCTTAGCGAACTTGGA
                      ____________________________________________________________
consensus             AGCTCTAACGGCGACGTTATACTTCTTACAAAAGGGAACCCAAAGCTTAGCGAACTTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           TGCTTCAACGAGGGAGTAGAAGGTGAGGGGCGATGCGCCGTCATCTGATACATAACAGGC
JMSF045E12+           TGCTTCGACGAGGGAATAGAAGGTGAGGGGGGATGCGCCGTCATCTGATACATAACAGGC
JMSF048K01+           TGCTTCGACGAGGGAATAGAAGGTGAGGGGGGATGCGCCGTCATCTGATACATAACAGGC
JMSF037O06+           TGCTTCGACGAGGGAATAGAAGGTGAGGGGGGATGCGCCGTCATCTGATACATAACAGGC
                      ____________________________________________________________
consensus             TGCTTCGACGAGGGAATAGAAGGTGAGGGGGGATGCGCCGTCATCTGATACATAACAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           TAGCTTGTTCGCCGGATAATCCACAGCCAACAAAGATAACACCGTGTTAACCGTTATAAT
JMSF045E12+           TAGCTTGTTGGCCGGATAGTCCACAGCCAACAAAGATAATACCGTGTTAACCGTTATAAT
JMSF048K01+           TAGCTTGTTGGCCGGATAGTCCACAGCCAACAAAGATAATACCGTGTTAACCGTTATAAT
JMSF037O06+           TAGCTTGTTGGCCGGATAGTCCACAGCCAACAAAGATAATACCGTGTTAACCGTTATAAT
                      ____________________________________________________________
consensus             TAGCTTGTTGGCCGGATAGTCCACAGCCAACAAAGATAATACCGTGTTAACCGTTATAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           CGGCGGTTCCAGTTCCGGGTCGGCCGTGGTAACGAACATATCCACAGCCGGAAACTCAGA
JMSF045E12+           CGGCGGTTCCAGTTCCGGGTCGGCCGTCGTAACGAACATATCCACAGCTGGAAACTCAGA
JMSF048K01+           CGGCGGTTCCAGTTCCGGGTCGGCCGTCGTAACGAACATATCCACAGCTGGAAACTCAGA
JMSF037O06+           CGGCGGTTCCAGTTCCGGGTCGGCCGTCGTAACGAACATATCCACAGCTGGAAACTCAGA
                      ____________________________________________________________
consensus             CGGCGGTTCCAGTTCCGGGTCGGCCGTCGTAACGAACATATCCACAGCTGGAAACTCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           TGTCCCATCTCCCAACCATTGCAAGAGGCGTTGTGGGTATGTTTTGGTTTGGATTTGATT
JMSF045E12+           TGTCCCATCTCCCAACCATTGGAAGAGGCGTTGTGGGTATGTTTTGGTTTGGATTTGATT
JMSF048K01+           TGTCCCATCTCCCAACCATTGGAAGAGGCGTTGTGGGTATGTTTTGGTTTGGATTTGATT
JMSF007O06+                            ATTGCAAGAGGCGTTGTGGGTATGTTTTGGTTTGGATTTGATT
JMSF037O06+           TGTCCCATCTCCCAACCATTGGAAGAGGCGTTGTGGGTATGTTTTGGTTTGGATTTGATT
                      ____________________________________________________________
consensus             TGTCCCATCTCCCAACCATTGGAAGAGGCGTTGTGGGTATGTTTTGGTTTGGATTTGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF018E17+           CC                                                          
JMSF045E12+           CCACTTAGAGCTGACGACGATAATCCAAACGAAAGTGAACCAAGCCTCGCAGATTAGAGC
JMSF048K01+           CCACTTAGAGCTGACGACGATAATCCAAACGAAAGTGAACCAAGCCTCGCAGATTAGAGC
JMSF007O06+           CCACTTAGAGTTGACGAGGACAATCCAAACAAAAGTGAACCAAGCCTCGCAGGTGAGAGC
JMSF037O06+           CCACTTAGAGCTGACGACGATAATCCAAACGAAAGTGAACCAAGCCTCGCAGATTAGAGC
                      ____________________________________________________________
consensus             CCACTTAGAGCTGACGACGATAATCCAAACGAAAGTGAACCAAGCCTCGCAGATTAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045E12+           CAGAAGCCAAGGGATTCGGTGATGGGTGCTGAGAGAAAAGAGTCTGTAGGTAATAAGTGA
JMSF048K01+           CAGAAGCCAAGGGATTCGGTGATGGGTGCTGAGAGAAAAGAGTCTGTAGGTAATAAGTGA
JMSF007O06+           AAGAAGCCAAGGGATATGGTCATGGGTGCGGAGAGAAAAGAGTCTGTAGCTAATGAGTGA
JMSF037O06+           CAGAAGCCAAGGGATTCGGTGATGGGTGCTGAGAGAAAAGAGTCTGTAGGTAATAAGTGA
                      ____________________________________________________________
consensus             CAGAAGCCAAGGGATTCGGTGATGGGTGCTGAGAGAAAAGAGTCTGTAGGTAATAAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045E12+           TAGGAGAAGGAATAGGATGATGATTTCAATGG                            
JMSF048K01+           TAGGAGAAGGAATAGGATGATGATTTCAATGGCTCTTGATATTCTGTTGTTTCGGATTTT
JMSF007O06+           TAGCAGAAGGAATAGGATAATGATTTCTATGGTTCTTGATATTCTGTTGTTTCGAAATTG
JMSF037O06+           TAGGAGAAGGAATAGGATGATGATTTCAATGGCTCTTGATATTCTGTTGTTTCGGATTTT
                      ____________________________________________________________
consensus             TAGGAGAAGGAATAGGATGATGATTTCAATGGCTCTTGATATTCTGTTGTTTCGGATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048K01+           TATTTCGTAAAGTGGAAAAGGAGGATGCTTGGGTGCCATGATGTATATATCTCAACATAC
JMSF007O06+           TATTTCGTAAAGTGGAAAAGGA                                      
JMSF037O06+           TATTTCGTAAAGTGGAAAAGGAGGATGCTTGGGTGCCATGATGTATATATCTCAACATAC
                      ____________________________________________________________
consensus             TATTTCGTAAAGTGGAAAAGGAGGATGCTTGGGTGCCATGATGTATATATCTCAACATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF048K01+           AAGCAGGAATAATGCTTGTGTTTCAAGTGGTGGGAGTT                      
JMSF037O06+           AAGCAGGAATAATGCTTGTGTTTCAAGTGGTGGGAGTTGCAGAATACAGAGTTCCCCATC
                      ____________________________________________________________
consensus             AAGCAGGAATAATGCTTGTGTTTCAAGTGGTGGGAGTTGCAGAATACAGAGTTCCCCATC