Contig 003798:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008G21Sequence102003798 (6)gb|KJB14633.1|5e-07hypothetical protein B456_002G134900 [Gossypium raimondii]508006264 (18)ref|XP_011074396.1|160PREDICTED: polyadenylate-binding protein 8-like [Sesamum indicum]
JMFS041H01Sequence628003798 (6)ref|XP_008220252.1|284PREDICTED: polyadenylate-binding protein 2-like [Prunus mume]
JMFS080F01Sequence626003798 (6)ref|XP_009613515.1|373PREDICTED: polyadenylate-binding protein 2-like [Nicotiana tomentosiformis]
JMFS159C04Sequence445003798 (6)ref|XP_011074396.1|250PREDICTED: polyadenylate-binding protein 8-like [Sesamum indicum]
JMSF030E18Sequence625003798 (6)ref|XP_007226962.1|2e-46hypothetical protein PRUPE_ppa002618mg [Prunus persica] ref|XP_007226963.1| hypo711005764 (2)ref|XP_004252758.1|215PREDICTED: polyadenylate-binding protein 2-like [Solanum lycopersicum]
JMSF037L23Sequence695003798 (6)ref|XP_007226962.1|7e-62hypothetical protein PRUPE_ppa002618mg [Prunus persica] ref|XP_007226963.1| hypo737005764 (2)ref|XP_004252758.1|219PREDICTED: polyadenylate-binding protein 2-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF008G21+                                                        GTGGGCTTTCCCAAC
JMFS080F01+                                                           GGCTTTCCCAAC
                      ____________________________________________________________
consensus                                                          GTGGGCTTTCCCAAC
 
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JMFF008G21+           ATACCATTCTTTATCATCAAATTTCTTCCCATTCAAAGCTTCGACAGCCCNGGCAGCATC
JMFS080F01+           ATACCATTCTTTATCATCAAATTTCTTCCCATTCAAAGCTTCGACAGCCCTGGCAGCATC
                      ____________________________________________________________
consensus             ATACCATTCTTTATCATCAAATTTCTTCCCATTCAAAGCTTCGACAGCCCTGGCAGCATC
 
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JMFF008G21+           ATCTGCGTTCTCAAAANTGACAA                                     
JMFS080F01+           ATCTGCGTTCTCAAAATTGACAAACCCAAAACATTTTGACTTTCCATCATCTTCCCTCAT
                      ____________________________________________________________
consensus             ATCTGCGTTCTCAAAATTGACAAACCCAAAACATTTTGACTTTCCATCATCTTCCCTCAT
 
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JMFS080F01+           CACTACAGCACTAGTAATATTCCCAAATTCAGCAAAGGTTTTTGTCAGATCCTCATCTGT
                      ____________________________________________________________
consensus             CACTACAGCACTAGTAATATTCCCAAATTCAGCAAAGGTTTTTGTCAGATCCTCATCTGT
 
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JMFS080F01+           TACGGATTCTGATATGTTCTTGACAAAAACATTGTAGAACTTGGTTTTATTCGTAGCAGT
                      ____________________________________________________________
consensus             TACGGATTCTGATATGTTCTTGACAAAAACATTGTAGAACTTGGTTTTATTCGTAGCAGT
 
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JMFS080F01+           ATCTCTTTCCTGTTTACGAAGAAAGGGTCCAACATACACTTGTTTGTCATTAATGAGCAT
JMFS041H01+                                                       TGTCATTCATGAGCAT
                      ____________________________________________________________
consensus             ATCTCTTTCCTGTTTACGAAGAAAGGGTCCAACATACACTTGTTTGTCATTCATGAGCAT
 
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JMFS080F01+           ACCATTTAACTTATCAATGGCACTTTGAGCCGAATCTTCATTGTCAAACTGTACAAAACC
JMFS159C04+                                  TTTGAGCCGAATCTTCATTGTCAAACTGTACAAAACC
JMFS041H01+           TCCATTTAACTTGTCAATAGCA-TTTGAGCCGAGTCTTCATTGACAAATTGTACAAAACC
                      ____________________________________________________________
consensus             TCCATTTAACTTGTCAATGGCACTTTGAGCCGAATCTTCATTGTCAAACTGTACAAAACC
 
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JMFS080F01+           GTGACCCTTAGACTGACCATTAGGATCAGTAGCTATCTTGCAAGAAAGAATGTTTCCAAA
JMFS159C04+           GTGACCCTTAGACTGACCATTAGGATCAGTAGCTATCTTGCAAGAAAGAATGTTTCCAAA
JMFS041H01+           ATAGCCTTTAGACTGCCCATTAGAATCAGTAGCTATTTTGCATGAAAGAATGTTGCCAAA
                      ____________________________________________________________
consensus             GTGACCCTTAGACTGACCATTAGGATCAGTAGCTATCTTGCAAGAAAGAATGTTTCCAAA
 
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JMFS080F01+           GCTTGAAAATGTGTCATGTAAGGCCTTGTTGTCAATTGACTTGTCCAAGTTCTTAATAAA
JMFS159C04+           GCTTGAAAATGTGTCATGTAAGGCCTTGTTGTCAATTGACTTGTCCAAGTTCTTAATAAA
JMFS041H01+           ACTAGAAAAAGTGTCATGTAAGGCTTTGTTGTCAATTGATTTGTCCAAATTCTTAATAAA
JMSF037L23+                                    TTGTTGTCAATTGATTTGTCCAAATTCTTAATAAA
                      ____________________________________________________________
consensus             GCTTGAAAATGTGTCATGTAAGGCCTTGTTGTCAATTGATTTGTCCAAGTTCTTAATAAA
 
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JMFS080F01+           TATATTTGCAGTTCCACTATTACGCAGGCTAGGGTCACGGTGAGAATGCATTATCCTAAT
JMFS159C04+           TATATTTGCAGTTCCACTCTTACGCAGGCTAGGGTCACGGTGAGAATGCATTATCCTAAT
JMFS041H01+           TATATTAGCAGTTCCACTCTTACGAAGACTAGGATCACGATGAGAATACATGATCCTAAT
JMSF030E18+                                             TCACGATGAGAATACATGATCCTAAT
JMSF037L23+           TATATTAGCAGTTCCACTCTTACGAAGACTAGGATCACGATGAGAATACATGATCCTAAT
                      ____________________________________________________________
consensus             TATATTTGCAGTTCCACTCTTACGCAGGCTAGGGTCACGATGAGAATACATGATCCTAAT
 
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JMFS080F01+           AGACTTGCTATTGACAGGAGTGAAGTTCAATACTTCCATTGCTCTTGCAGCATCCTGAGG
JMFS159C04+           AGACTTGCTATTGACAGGAGTGAAGTTCAACCCTTCCATTGCTCTTGCAGCATCCTGAGG
JMFS041H01+           AGACTTATTATTCATAGAAGTGAAGTTCAACATCTCCATTGCCCTTGCAGCATCATGAGG
JMSF030E18+           AGACTTATTATTCATAGAAGTGAAGTTCAACATCTCCATTGCCCTTGCAGCATCCTGAGG
JMSF037L23+           AGACTTATTATTCATAGAAGTGAAGTTCAACATCTCCATTGCCCTTGCAGCATCCTGAGG
                      ____________________________________________________________
consensus             AGACTTATTATTCATAGAAGTGAAGTTCAACATCTCCATTGCCCTTGCAGCATCCTGAGG
 
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JMFS080F01+           ACTGCTATAGTTGA                                              
JMFS159C04+           ACTGCTATAGTTGACGTAGCCATAGCCGAGAGATCGGCGAGAGCTGATGTCCCGACAGAC
JMFS041H01+           GTTGGTATAGTTGACATATCCATAGCCGAGGGAACGGCGAGAGCTCATGTCGCGACAAAC
JMSF030E18+           GTTGGTATAGTTGACATATCCATAGCCGAGGGAACGGCGAGAGCTCATGTCGCGACAAAC
JMSF037L23+           GTTGGTATAGTTGACATATCCATAGCCGAGGGAACGGCGAGAGCTCATGTCGCGACAAAC
                      ____________________________________________________________
consensus             GTTGGTATAGTTGACATATCCATAGCCGAGGGAACGGCGAGAGCTCATGTCGCGACAAAC
 
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JMFS159C04+           CCTAACTGATACCACCTGGCCCACCTGGTTAAACAGA                       
JMFS041H01+           CCTGACAGACACAACCTGTCCGACCTGGTTGAACAGATCGTAGAGCTGCGAGTCCGACAC
JMSF030E18+           CCTGACAGACACAACCTGTCCGACCTGGTTGAACAGATCGTAGAGCTGCGAGTCCGACAC
JMSF037L23+           CCTGACAGACACAACCTGTCCGACCTGGTTGAACAGATCGTAGAGCTGCGAGTCCGACAC
                      ____________________________________________________________
consensus             CCTGACAGACACAACCTGTCCGACCTGGTTGAACAGATCGTAGAGCTGCGAGTCCGACAC
 
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JMFS041H01+           GTTCGCGTCCAGGTCACCAACGTAAAGCGAAGTCGACAGGAACTGGTTGCCGACCACGCC
JMSF030E18+           GTTCGCGTCCAGGTCACCAACGTAAAGCGAAGTCGACAGGAACTGGTTGCCGACCACGCC
JMSF037L23+           GTTCGCGTCCAGGTCACCAACGTAAAGCGAAGTCGACAGGAACTGGTTGCCGACCACGCC
                      ____________________________________________________________
consensus             GTTCGCGTCCAGGTCACCAACGTAAAGCGAAGTCGACAGGAACTGGTTGCCGACCACGCC
 
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JMFS041H01+           ACCGGGAGCAACAACCGCGGCAGTGGCGGCGGCGGCTGCCACGCCGCCGGCACTCGGCGC
JMSF030E18+           ACCGGGAGCAACAACCGCGGCAGTGGCGGCGGCGGCTGCCACGCCGCCGGCACTCGGCGC
JMSF037L23+           ACCGGGAGCAACAACCGCGGCAGTGGCGGCGGCGGCTGCCACGCCGCCGGCACTCGGCGC
                      ____________________________________________________________
consensus             ACCGGGAGCAACAACCGCGGCAGTGGCGGCGGCGGCTGCCACGCCGCCGGCACTCGGCGC
 
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JMFS041H01+           TGCCAATCCGTTGGCTCCCATCGCCGGACTCTGATGCTGCACTTGAATCTG         
JMSF030E18+           TGCCAATCCGTTGGCTCCCATCGCCGGACTNTGATGCTGCACTTGAATCTGAGCCATTCT
JMSF037L23+           TGCCAATCCGTTGGCTCCCATCGCCGGACTCTGATGCTGCACTTGAATCTGAGCCATTCT
                      ____________________________________________________________
consensus             TGCCAATCCGTTGGCTCCCATCGCCGGACTCTGATGCTGCACTTGAATCTGAGCCATTCT
 
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JMSF030E18+           CCTCTCACGACCAAATAGCAATTCGCTTTCTGTTCCCTCTCCCCCTATCCGCTCAACTAT
JMSF037L23+           CCTCTCACGACCAAATAGCAATTCGCTTTCTGTTCCCTCTCCCCCTATCCGCTCAACTAT
                      ____________________________________________________________
consensus             CCTCTCACGACCAAATAGCAATTCGCTTTCTGTTCCCTCTCCCCCTATCCGCTCAACTAT
 
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JMSF030E18+           AATAATTAACGATAAGCGCCGAAATTAGTTACAGAAATTGCCGGAGATTTTTAGGGGGGG
JMSF037L23+           AATAATTAACGATAAGCGCCGAAATTAGTTACAGAAATTGCCGGAGATTTTTAGGGGGGG
                      ____________________________________________________________
consensus             AATAATTAACGATAAGCGCCGAAATTAGTTACAGAAATTGCCGGAGATTTTTAGGGGGGG
 
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JMSF030E18+           TTTTGTATGTAAATACGATAGGAGAGGGAGGGTAAAATAGGGATAAATCGCCGGAGATCC
JMSF037L23+           TTTTGTATGTAAATACGATAGGAGAGGGAGGGTAAAATAGGGATAAATCGCCGGAGATCC
                      ____________________________________________________________
consensus             TTTTGTATGTAAATACGATAGGAGAGGGAGGGTAAAATAGGGATAAATCGCCGGAGATCC
 
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JMSF030E18+           AACGGAGAGAGACGAAACAGAAGGATTTTTAGGGAGGGCAGGGGGAAAACTGCACCGC  
JMSF037L23+           AACGGAGAGAGACGAAACAGAAGGATTTTTAGGGAGGGCAGGGGGAAAACTGCACCGCAC
                      ____________________________________________________________
consensus             AACGGAGAGAGACGAAACAGAAGGATTTTTAGGGAGGGCAGGGGGAAAACTGCACCGCAC