Contig 003797:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037J16Sequence672003797 (2)ref|XP_009791773.1|222PREDICTED: uncharacterized protein LOC104238952 [Nicotiana sylvestris]811019387ref|XP_010036797.1|2e-94PREDICTED: uncharacterized protein LOC104425706 isoform X2 [Eucalyptus grandis]
JMSF048M02Sequence653003797 (2)ref|XP_009791773.1|233PREDICTED: uncharacterized protein LOC104238952 [Nicotiana sylvestris]685022662ref|XP_006358699.1|3e-04PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF048M02+                           TCTGGGGAATCCTCATTGCATGGCCCATTGTCAAAGCAATCATA
JMSF037J16+                                                           AAAGCAATCATA
                      ____________________________________________________________
consensus                             TCTGGGGAATCCTCATTGCATGGCCCATTGTCAAAGCAATCATA
 
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JMSF048M02+           CGGTGCAGAGCTTGAGGTGAACAGAAAACAACNTTCACCATTCCAATTCAATGCAGCCTC
JMSF037J16+           CGGTGCAGAGCTTGAGGTGAACAGAAAACAACCTTCACCATTCCAATTCAATGCAGCCTC
                      ____________________________________________________________
consensus             CGGTGCAGAGCTTGAGGTGAACAGAAAACAACCTTCACCATTCCAATTCAATGCAGCCTC
 
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JMSF048M02+           CTTGACATCAGCAGGATAATCTTCAGTTCGTGATGGAGGAGCACAGAAGATAACATAAGG
JMSF037J16+           CTTGACATCAGCAGGATAATCTTCAGTTCGTGATGGAGGAGCACAGAAGATAACATAAGG
                      ____________________________________________________________
consensus             CTTGACATCAGCAGGATAATCTTCAGTTCGTGATGGAGGAGCACAGAAGATAACATAAGG
 
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JMSF048M02+           GAACTTATCAAAAAACTTGTTTTCTTTCAAAGATGGTTTGATTCCCATTTGGATCAGTTC
JMSF037J16+           GAACTTATCAAAAAACTTGTTTTCTTTCAAAGATGGTTTGATTCCCATTTGGATCAGTTC
                      ____________________________________________________________
consensus             GAACTTATCAAAAAACTTGTTTTCTTTCAAAGATGGTTTGATTCCCATTTGGATCAGTTC
 
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JMSF048M02+           ATCATGATGATCAGTGGTAATTGTGTGCCCAAAAATTTGACTACCTGGGTGTTCCTCTCG
JMSF037J16+           ATCATGATGATCAGTGGTAATTGTGTGCCCAAAAATTTGACTACCTGGGTGTTCCTCTCG
                      ____________________________________________________________
consensus             ATCATGATGATCAGTGGTAATTGTGTGCCCAAAAATTTGACTACCTGGGTGTTCCTCTCG
 
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JMSF048M02+           CCATTTTTCAGCGACTAAACGGCCAAGCACACCCGGTCCGACGATTAGCAAGTCATTTGC
JMSF037J16+           CCATTTTTCAGCGACTAAACGGCCAAGCACACCCGGTCCGACGATTAGCAAGTCATTTGC
                      ____________________________________________________________
consensus             CCATTTTTCAGCGACTAAACGGCCAAGCACACCCGGTCCGACGATTAGCAAGTCATTTGC
 
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JMSF048M02+           CCCAATAGCCACCCCCGAAGAAGCATCCAACCCCTCAGTCGTTGCATCAGTAGCGGAAGA
JMSF037J16+           CCCAATAGCCACCCCCGAAGAAGCATCCAACCCCTCAGTCGTTGCATCAGTAGCGGAAGA
                      ____________________________________________________________
consensus             CCCAATAGCCACCCCCGAAGAAGCATCCAACCCCTCAGTCGTTGCATCAGTAGCGGAAGA
 
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JMSF048M02+           AGAAGCTTTAACTTGGAAAGAAGTGTCCATGGGCGAAGAGTGCTTGAGGGAAACGAAATT
JMSF037J16+           AGAAGCTTTAACTTGGAAAGAAGTGTCCATGGGCGAAGAGTGCTTGAGGGAAACGAAATT
                      ____________________________________________________________
consensus             AGAAGCTTTAACTTGGAAAGAAGTGTCCATGGGCGAAGAGTGCTTGAGGGAAACGAAATT
 
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JMSF048M02+           GTGGGCACAGAGCGACAGAAACGAGAGTGAGCTTCTAGGATTGAGTTTTGGCGAGTCGAA
JMSF037J16+           GTGGGCACAGAGCGACAGAAACGAGAGTGAGCTTCTAGGATTGAGTTTTGGCGAGTCGAA
                      ____________________________________________________________
consensus             GTGGGCACAGAGCGACAGAAACGAGAGTGAGCTTCTAGGATTGAGTTTTGGCGAGTCGAA
 
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JMSF048M02+           ACAAGGAATGATTTCGATCCTTGTGGCAAACGTATTGGAAATGGTGAGGCAGACTGTACT
JMSF037J16+           ACAAGGAATGATTTCGATCCTTGTGGCAAACGTATTGGAAATGGTGAGGCAGACTGTACT
                      ____________________________________________________________
consensus             ACAAGGAATGATTTCGATCCTTGTGGCAAACGTATTGGAAATGGTGAGGCAGACTGTACT
 
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JMSF048M02+           GCCCATTTGGTAGTGATCACTATTGTTGATAAGATCGAACTCGTGCTGTTGAGAAGGGGA
JMSF037J16+           GCCCATTTGGTAGTGATCACTATTGTTGATAAGATCGAACTCGTGCTGTTGAGAAGGGGA
                      ____________________________________________________________
consensus             GCCCATTTGGTAGTGATCACTATTGTTGATAAGATCGAACTCGTGCTGTTGAGAAGGGGA
 
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JMSF048M02+           AATCTCGT                                                    
JMSF037J16+           AATCTCGTGCTCCAACCAGTGTAAATTCGGTATCCAGTAAAGTAGTTTACTGGGCGGCTC
                      ____________________________________________________________
consensus             AATCTCGTGCTCCAACCAGTGTAAATTCGGTATCCAGTAAAGTAGTTTACTGGGCGGCTC