Contig 003796:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF036I16Sequence371003796 (4)emb|CDP08828.1|3e-32unnamed protein product [Coffea canephora]321003796 (4)emb|CDP08828.1|1e-32unnamed protein product [Coffea canephora]
JMSF037H06Sequence371003796 (4)emb|CDP08828.1|3e-32unnamed protein product [Coffea canephora]321003796 (4)emb|CDP08828.1|1e-32unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF037H06+                                                           TGAGTGCATTC
rJMSF036I16+                                                           TGAGTGCATTC
JMSF036I16-                                                            TGAGTGCATTC
JMSF037H06-                                                            TGAGTGCATTC
                      ____________________________________________________________
consensus                                                              TGAGTGCATTC
 
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rJMSF037H06+          TTCTTCAAGCAGAAAATTTCAAATAGAAGGAAATGATGGACCCCAAAACTGACAAGCTGG
rJMSF036I16+          TTCTTCAAGCAGAAAATTTCAAATAGAAGGAAATGATGGACCCCAAAACTGACAAGCTGG
JMSF036I16-           TTCTTCAAGCAGAAAATTTCAAATAGAAGGAAATGATGGACCCCAAAACTGACAAGCTGG
JMSF037H06-           TTCTTCAAGCAGAAAATTTCAAATAGAAGGAAATGATGGACCCCAAAACTGACAAGCTGG
                      ____________________________________________________________
consensus             TTCTTCAAGCAGAAAATTTCAAATAGAAGGAAATGATGGACCCCAAAACTGACAAGCTGG
 
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rJMSF037H06+          TGAGAAGGACGACTATGGTGGCCACTGCTGTTGCTTCTTATTTCCTTCTCACTGCTGATT
rJMSF036I16+          TGAGAAGGACGACTATGGTGGCCACTGCTGTTGCTTCTTATTTCCTTCTCACTGCTGATT
JMSF036I16-           TGAGAAGGACGACTATGGTGGCCACTGCTGTTGCTTCTTATTTCCTTCTCACTGCTGATT
JMSF037H06-           TGAGAAGGACGACTATGGTGGCCACTGCTGTTGCTTCTTATTTCCTTCTCACTGCTGATT
                      ____________________________________________________________
consensus             TGAGAAGGACGACTATGGTGGCCACTGCTGTTGCTTCTTATTTCCTTCTCACTGCTGATT
 
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rJMSF037H06+          ATGGCCCCGAACCCAACGCCCTCGACCCTATTAAAAACGCTATACTTTCAGCAGAACGAT
rJMSF036I16+          ATGGCCCCGAACCCAACGCCCTCGACCCTATTAAAAACGCTATACTTTCAGCAGAACGAT
JMSF036I16-           ATGGCCCCGAACCCAACGCCCTCGACCCTATTAAAAACGCTATACTTTCAGCAGAACGAT
JMSF037H06-           ATGGCCCCGAACCCAACGCCCTCGACCCTATTAAAAACGCTATACTTTCAGCAGAACGAT
                      ____________________________________________________________
consensus             ATGGCCCCGAACCCAACGCCCTCGACCCTATTAAAAACGCTATACTTTCAGCAGAACGAT
 
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rJMSF037H06+          CTGTAAAGGAGTTTATCTTTGGACCAAAGAAGAGTGTTGAGGAAAACGAGATTGAGAAAG
rJMSF036I16+          CTGTAAAGGAGTTTATCTTTGGACCAAAGAAGAGTGTTGAGGAAAACGAGATTGAGAAAG
JMSF036I16-           CTGTAAAGGAGTTTATCTTTGGACCAAAGAAGAGTGTTGAGGAAAACGAGATTGAGAAAG
JMSF037H06-           CTGTAAAGGAGTTTATCTTTGGACCAAAGAAGAGTGTTGAGGAAAACGAGATTGAGAAAG
                      ____________________________________________________________
consensus             CTGTAAAGGAGTTTATCTTTGGACCAAAGAAGAGTGTTGAGGAAAACGAGATTGAGAAAG
 
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rJMSF037H06+          CCCCAACTGGTGTGGAGAAACACTGAAAGCAGCCTTTTGTTAACTACTACCTTTGCTTAT
rJMSF036I16+          CCCCAACTGGTGTGGAGAAACACTGAAAGCAGCCTTTTGTTAACTACTACCTTTGCTTAT
JMSF036I16-           CCCCAACTGGTGTGGAGAAACACTGAAAGCAGCCTTTTGTTAACTACTACCTTTGCTTAT
JMSF037H06-           CCCCAACTGGTGTGGAGAAACACTGAAAGCAGCCTTTTGTTAACTACTACCTTTGCTTAT
                      ____________________________________________________________
consensus             CCCCAACTGGTGTGGAGAAACACTGAAAGCAGCCTTTTGTTAACTACTACCTTTGCTTAT
 
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rJMSF037H06+          AAAAGAATTT                                                  
rJMSF036I16+          AAAAGAATTT                                                  
JMSF036I16-           AAAAGAATTTTGTTTGTAGGATTTGCTTATAAAGTTACAACTTTATACTCAAAAAAAAAA
JMSF037H06-           AAAAGAATTTTGTTTGTAGGATTTGCTTATAAAGTTACAACTTTATACTCAAAAAAAAAA
                      ____________________________________________________________
consensus             AAAAGAATTTTGTTTGTAGGATTTGCTTATAAAGTTACAACTTTATACTCAAAAAAAAAA