| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002D23 | Sequence | 395 | 003792 (4) | ref|XP_010904954.1| | 207 | PREDICTED: uncharacterized protein LOC105032256 [Elaeis guineensis] ref|XP_01090 | 768 | 005593 (2) | |||
| JMSF036P22 | Sequence | 664 | 003792 (4) | emb|CBI32396.3| | 1e-62 | unnamed protein product [Vitis vinifera] | 715 | 005757 (2) | ref|XP_011092562.1| | 108 | PREDICTED: uncharacterized protein LOC105172715 [Sesamum indicum] ref|XP_0110925 |
| JMSF037B14 | Sequence | 696 | 003792 (4) | emb|CBI32396.3| | 6e-66 | unnamed protein product [Vitis vinifera] | 665 | 005593 (2) | |||
| JMSF046P09 | Sequence | 717 | 003792 (4) | emb|CBI32396.3| | 6e-87 | unnamed protein product [Vitis vinifera] | 599 | 005757 (2) | ref|XP_007042445.1| | 1e-47 | Endonuclease or glycosyl hydrolase [Theobroma cacao] gb|EOX98276.1| Endonuclease |
This contig is upended
. : . : . : . : . : . :
JMSF046P09+ ACCCCAGAAGGAATGACAAGAATCACAGTATATCCACGTTGACCAAGAATGTGAAGCGCA
____________________________________________________________
consensus ACCCCAGAAGGAATGACAAGAATCACAGTATATCCACGTTGACCAAGAATGTGAAGCGCA
. : . : . : . : . : . :
JMSF046P09+ GGAGAAAAATCCACGTCCCCAGATATAAGCATAATTGAAGAGGGTGGAAGATTGTCAAGA
JMSF037B14+ ATAAGCATAATTGAAGAGGGTGGAAGATTGTCAAGA
JMSF002D23+ GTCAAGA
JMSF036P22+ GGGTGGAAGATTGTCAAGA
____________________________________________________________
consensus GGAGAAAAATCCACGTCCCCAGATATAAGCATAATTGAAGAGGGTGGAAGATTGTCAAGA
. : . : . : . : . : . :
JMSF046P09+ GCAAAAAGAAACATGTCAACCAAGATGGCCTTATCAGCAGCATCTTTCCTTCCATTGGGA
JMSF037B14+ GCAAAAAGAAACATGTCAACCAAGATGGCCTTATCAGCAGCATCTTTCCTTCCATTGGGA
JMSF002D23+ GCAAAAAGAAACATGTCAACCAAGATGGCCTTATCAGCAGCATCTTTCCTTCCATTGGGA
JMSF036P22+ GCAAAAAGAAACATGTCAACCAAGATGGCCTTATCAGCAGCATCTTTCCTTCCATTGGGA
____________________________________________________________
consensus GCAAAAAGAAACATGTCAACCAAGATGGCCTTATCAGCAGCATCTTTCCTTCCATTGGGA
. : . : . : . : . : . :
JMSF046P09+ ACATCTATAAGTTTAACCCCCGTTCTCTGACAACCCTCCCTTAATCGCCTCGGGAAGGCG
JMSF037B14+ ACATCTATAAGTTTAACCCCCGTTCTCTGACAACCCTCCCTTAATCGCCTCGGGAAGGCG
JMSF002D23+ ACATCTATAAGTTTAACCCCCGTTCTCTGACAACCCTCCCTTAATCGCCTCGGGAAGGCG
JMSF036P22+ ACATCTATAAGTTTAACCCCCGTTCTCTGACAACCCTCCCTTAATCGCCTCGGGAAGGCG
____________________________________________________________
consensus ACATCTATAAGTTTAACCCCCGTTCTCTGACAACCCTCCCTTAATCGCCTCGGGAAGGCG
. : . : . : . : . : . :
JMSF046P09+ TTAAAATCTCCATAAGCAGAAAACATTGTGACAGCTCCATTAATTACAGGATGGACATGC
JMSF037B14+ TTAAAATCTCCATAAGCAGAAAACATTGTGACAGCTCCATTAATTACAGGATGGACATGC
JMSF002D23+ TTAAAATCTCCATAAGCAGAAAACATTGTGACAGCTCCATTAATTACAGGATGGACATGC
JMSF036P22+ TTAAAATCTCCATAAGCAGAAAACATTGTGACAGCTCCATTAATTACAGGATGGACATGC
____________________________________________________________
consensus TTAAAATCTCCATAAGCAGAAAACATTGTGACAGCTCCATTAATTACAGGATGGACATGC
. : . : . : . : . : . :
JMSF046P09+ AAAGCCATTCTTATATTTCCAGCCACATCTTCTGGGCGCACATCACTTGGAACTGGACAA
JMSF037B14+ AAAGCCATTCTTATATTTCCAGCCACATCTTCTGGGCGCACATCACTTGGAACTGGACAA
JMSF002D23+ AAAGCCATTCTTATATTTCCAGCCACATCTTCTGGGCGCACATCACTTGGAACTGGACAA
JMSF036P22+ AAAGCCATTCTTATATTTCCAGCCACATCTTCTGGGCGCACATCACTTGGAACTGGACAA
____________________________________________________________
consensus AAAGCCATTCTTATATTTCCAGCCACATCTTCTGGGCGCACATCACTTGGAACTGGACAA
. : . : . : . : . : . :
JMSF046P09+ TTCTCTATATCCCAAAGAATGGCCACAGGTCCATTCAAGCAATCAGAACTCTGCTGAGGA
JMSF037B14+ TTCTCTATATCCCAAAGAATGGCCACAGGTCCATTCAAGCAATCAGAACTCTGCTGAGGA
JMSF002D23+ TTCTCTATATCCCAAAGAATGGCCACAGGTCCATTCAAGCAATCAGAACTCTGCTGAGGA
JMSF036P22+ TTCTCTATATCCCAAAGAATGGCCACAGGTCCATTCAAGCAATCAGAACTCTGCTGAGGA
____________________________________________________________
consensus TTCTCTATATCCCAAAGAATGGCCACAGGTCCATTCAAGCAATCAGAACTCTGCTGAGGA
. : . : . : . : . : . :
JMSF046P09+ TGAAGAAAGGTGGATCTCATGTTGGCAGTTAAGATGGCTTTACCACTTTTATCTGATGAT
JMSF037B14+ TGAAGAAAGGTGGATCTCATGTTGGCAGTTAAGATGGCTTTACCACTTTTATCTGATGAT
JMSF002D23+ TGAAGAAAGGTGGATCTCATGTTGGCAGTTAAGATGGCTTTACCACTTTTATCTGATGAT
JMSF036P22+ TGAAGAAAGGTGGATCTCATGTTGGCAGTTAAGATGGCTTTACCACTTTTATCTGATGAT
____________________________________________________________
consensus TGAAGAAAGGTGGATCTCATGTTGGCAGTTAAGATGGCTTTACCACTTTTATCTGATGAT
. : . : . : . : . : . :
JMSF046P09+ TCTGAAGACAGGATAAGAGGCAACGCATTTGAATGTGCCATCAACTATCTCATAAAAAAT
JMSF037B14+ TCTGAAGACAGGATAAGAGGCAACGCATTTGAATGTGCCATCAACTATCTCATAAAAAAT
JMSF002D23+ TC
JMSF036P22+ TCTGAAGACAGGATAAGAGGCAACGCATTTGAATGTGCCATCAACTATCTCATAAAAAAT
____________________________________________________________
consensus TCTGAAGACAGGATAAGAGGCAACGCATTTGAATGTGCCATCAACTATCTCATAAAAAAT
. : . : . : . : . : . :
JMSF046P09+ TCACTGCAATCC-----------TGGGCGAATCTGCCGCGGAGCCGATGATTTAAGCAGA
JMSF037B14+ TCACTGCAATCCAGAAAGAAGCTTACGCGAATCTGCCGCGGAGCCGATGATTTAAGCAGA
JMSF036P22+ TCACTGCAAT---------------CGCGAATCTGCCGCGGAGCCGATGATTTAAGCAGA
____________________________________________________________
consensus TCACTGCAATCC-----------TGCGCGAATCTGCCGCGGAGCCGATGATTTAAGCAGA
. : . : . : . : . : . :
JMSF046P09+ AATATAATAAAGAAAAAAAGGGTTTTGCAGCGTTGCTAAGGATGAAGAATTGTAGGTTAA
JMSF037B14+ AATATAATAAAGAAAAAAAGGGTTTTGCAGCGTTGCTAAGGATGAAGAATTGTAGGTTAA
JMSF036P22+ AATATAATAAAGAAAAAAAGGGTTTTGCAGCGTTGCTAAGGATGAAGAATTGTAGGTTAA
____________________________________________________________
consensus AATATAATAAAGAAAAAAAGGGTTTTGCAGCGTTGCTAAGGATGAAGAATTGTAGGTTAA
. : . : . : . : . : . :
JMSF046P09+ CCGGAGAGGATTTCGGACCAAACCGGGCCGGCAAAGGATAGAGAATAGAGAAGAATTCGG
JMSF037B14+ CCGGAGAGGATTTCGGACCAAACCGGGCCGGCAAAGGATAGAGAATAGAGAAGAATTCGG
JMSF036P22+ CCGGAGAGGATTTCGGACCAAACCGGGCCGGCAAAGGATAGAGAATAGAGAAGAATTCGG
____________________________________________________________
consensus CCGGAGAGGATTTCGGACCAAACCGGGCCGGCAAAGGATAGAGAATAGAGAAGAATTCGG
. : . : . : . : . : . :
JMSF046P09+ AATCCT
JMSF037B14+ AATCCTAGACCGCCTTCCTTCGGTGCGCTGTAATAATAGTACCAAAACTTTTGTGCTC
JMSF036P22+ AATCCTAGACCGCCTTCCTTCGGTGCGCTGTAATAATAGTACCAAAACTTTTGTGCTCCC
____________________________________________________________
consensus AATCCTAGACCGCCTTCCTTCGGTGCGCTGTAATAATAGTACCAAAACTTTTGTGCTCCC