| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010J02 | Sequence | 563 | 003786 (8) | ref|XP_009761469.1| | 3e-72 | PREDICTED: F-box protein PP2-A12-like [Nicotiana sylvestris] | 760 | 003786 (8) | ref|XP_011072169.1| | 7e-79 | PREDICTED: F-box protein PP2-A12 [Sesamum indicum] |
| JMFF019F22 | Sequence | 563 | 003786 (8) | ref|XP_009761469.1| | 3e-72 | PREDICTED: F-box protein PP2-A12-like [Nicotiana sylvestris] | 733 | 003786 (8) | ref|XP_011072169.1| | 2e-70 | PREDICTED: F-box protein PP2-A12 [Sesamum indicum] |
| JMFN005C13 | Sequence | 621 | 003786 (8) | ref|XP_009761469.1| | 3e-92 | PREDICTED: F-box protein PP2-A12-like [Nicotiana sylvestris] | |||||
| JMFN045O17 | Sequence | 628 | 003786 (8) | ref|XP_009765736.1| | 1e-68 | PREDICTED: F-box protein PP2-A12-like [Nicotiana sylvestris] | |||||
| JMSF036K20 | Sequence | 648 | 003786 (8) | ref|XP_009761469.1| | 1e-92 | PREDICTED: F-box protein PP2-A12-like [Nicotiana sylvestris] | 719 | 003786 (8) | emb|CDP09805.1| | 2e-90 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF019F22- TTTGACTAATTAAGAATGC
rJMFF010J02- ATTTGACTAATTAAGAATGC
____________________________________________________________
consensus ATTTGACTAATTAAGAATGC
. : . : . : . : . : . :
rJMFF019F22- ACGCTTAACTCAATGGTTCAGTAAGTAGTAGTCTGAAACTGAGAATCTTCAAAATAAGAC
rJMFF010J02- ACGCTTAACTCAATGGTTCAGTAAGTAGTAGTCTGAAACTGAGAATCTTCAAAATAAGAC
____________________________________________________________
consensus ACGCTTAACTCAATGGTTCAGTAAGTAGTAGTCTGAAACTGAGAATCTTCAAAATAAGAC
. : . : . : . : . : . :
rJMFF019F22- AATTTCAAATTAATAACAAAAATCAACACATTTGATAAAACCCCGACACTTGAAGATCAC
JMFN045O17+ TTGATAAAACCCCGACACTGNAAGATCAC
rJMFF010J02- AATTTCAAATTAATAACAAAAATCAACACATTTGATAAAACCCCGACACTTGAAGATCAC
rJMSF036K20- TTGATAAAACCCCGACACTTGAAGATCAC
____________________________________________________________
consensus AATTTCAAATTAATAACAAAAATCAACACATTTGATAAAACCCCGACACTTGAAGATCAC
. : . : . : . : . : . :
rJMFF019F22- AAAGTCAAAGATACACATTTTCCTCATGAATAAAGATTTGATCCTCAAGCTACTATCACT
JMFN045O17+ AAAGTCAAAGATACACATTTTCCTCATGAATAAAGATTTGATCCTCAAGCTACTATCACT
rJMFF010J02- AAAGTCAAAGATACACATTTTCCTCATGAATAAAGATTTGATCCTCAAGCTACTATCACT
rJMSF036K20- AAAGTCAAAGATACACATTTTCCTCATGAATAAAGATTTGATCCTCAAGCTACTATCACT
____________________________________________________________
consensus AAAGTCAAAGATACACATTTTCCTCATGAATAAAGATTTGATCCTCAAGCTACTATCACT
. : . : . : . : . : . :
rJMFF019F22- ACACTGCAGAAATATGGCTAAAATAAAAAGGAGCCATAACTCTATCATCACTAAACAATT
JMFN045O17+ ACACTGCAGAAATATGGCTAAAATAAAAAGGAGCCATAACTCTATCATCACTAAACAATT
rJMFF010J02- ACACTGCAGAAATATGGCTAAAATAAAAAGGAGCCATAACTCTATCATCACTAAACAATT
rJMSF036K20- ACACTGCAGAAATATGGCTAAAATAAAAAGGAGCCATAACTCTATCATCACTAAACAATT
____________________________________________________________
consensus ACACTGCAGAAATATGGCTAAAATAAAAAGGAGCCATAACTCTATCATCACTAAACAATT
. : . : . : . : . : . :
rJMFF019F22- ACCACTAAGAGGAGGGCTAAACTGCAATCTAAAAAAATGCTTTAACCTCTCTTTGGCTTC
JMFN045O17+ ACCACTAAGAGGAGGGCTAAACTGCAATCTAAAAAAATGCTTTAACCTCTCTTTGGCTTC
rJMFF010J02- ACCACTAAGAGGAGGGCTAAACTGCAATCTAAAAAAATGCTTTAACCTCTCTTTGGCTTC
rJMSF036K20- ACCACTAAGAGGAGGGCTAAACTGCAATCTAAAAAAATGCTTTAACCTCTCTTTGGCTTC
____________________________________________________________
consensus ACCACTAAGAGGAGGGCTAAACTGCAATCTAAAAAAATGCTTTAACCTCTCTTTGGCTTC
. : . : . : . : . : . :
rJMFF019F22- ATAGGGCGTACGAGGACAGAATCTACACAAAGCCCCCCCTTGGTATGGGTACAATCAATT
JMFN045O17+ ATAGGGCGTACGAGGACAGAATCTACACAAAGCCCCCCCTTGGTATGGGTACAATCAATT
rJMFF010J02- ATAGGGCGTACGAGGACAGAATCTACACAAAGCCCCCCCTTGGTATGGGTACAATCAATT
rJMSF036K20- ATAGGGCGTACGAGGACAGAATCTACACAAAGCCCCCCCTTGGTATGGGTACAATCAATT
____________________________________________________________
consensus ATAGGGCGTACGAGGACAGAATCTACACAAAGCCCCCCCTTGGTATGGGTACAATCAATT
. : . : . : . : . : . :
rJMFF019F22- TGAGTCATTGAAAACATTAGTTTCATCTGTGAGCTGGAATCAGCTACGATGAAATCTCCA
JMFN045O17+ TGAGTCATTGAAAACATTAGTTTCATCTGTGAGCTGGAATCAGCTACGATGAAATCTCCA
rJMFF010J02- TGAGTCATTGAAAACATTAGTTTCATCTGTGAGCTGGAATCAGCTACGATGAAATCTCCA
rJMSF036K20- TGAGTCATTGAAAACATTAGTTTCATCTGTGAGCTGGAATCAGCTACGATGAAATCTCCA
____________________________________________________________
consensus TGAGTCATTGAAAACATTAGTTTCATCTGTGAGCTGGAATCAGCTACGATGAAATCTCCA
. : . : . : . : . : . :
rJMFF019F22- GAATGGTGGTAAATCCATTTCCCGGGCTTGTTCAAGTAACACTGCGTTGTTGCTTGCTGG
JMFN045O17+ GAATGGTGGTAAATCCATTTCCCGGGCTTGTTCAAGTAACACTGCGTTGTTGCTTGCTGG
rJMFF010J02- GAATGGTGGTAAATCCATTTCCCGGGCTTGTTCAAGTAACACTGCGTTGTTGCTTGCTGG
rJMSF036K20- GAATGGTGGTAAATCCATTTCCCGGGCTTGTTCAAGTAACACTGCGTTGTTGCTTGCTGG
____________________________________________________________
consensus GAATGGTGGTAAATCCATTTCCCGGGCTTGTTCAAGTAACACTGCGTTGTTGCTTGCTGG
. : . : . : . : . : . :
rJMFF019F22- CCATCCGAGGTTGAAAGCTGGAACCGTACTGGTTTTATGTACCACCCGTGGACATGTTCT
JMFN045O17+ CCATCCGAGGTTGAAAGCTGGAACCGTACTGGTTTTATGTACCACCCGTGGACATGTTCT
rJMFF010J02- CCATCCGAGGTTGAAAGCTGGAACCGTACTGGTTTTATGTACCACCCGTGGACATGTTCT
rJMSF036K20- CCATCCGAGGTTGAAAGCTGGAACCGTACTGGTTTTATGTACCACCCGTGGACATGTTCT
____________________________________________________________
consensus CCATCCGAGGTTGAAAGCTGGAACCGTACTGGTTTTATGTACCACCCGTGGACATGTTCT
. : . : . : . : . : . :
rJMFF019F22- GAACTACAAACTCTACGACAAAATCTCCTGGTTGCACGCCCCAAGTGCAGCCTGAAGTAA
JMFN045O17+ GAACTACAAACTCTACGACAAAATCTCCTGGTTGCACGCCCCAAGTGCAGCCTGAAGTAA
rJMFF010J02- GAACTACAAACTCTACGACAAAATCTCCTGGTTGCACGCCCCAAGTGCAGCCTGAAGTAA
rJMSF036K20- GAACTACAAACTCTACGACAAAATCTCCTGGTTGCACGCCCCAAGTGCAGCCTGAAGTAA
____________________________________________________________
consensus GAACTACAAACTCTACGACAAAATCTCCTGGTTGCACGCCCCAAGTGCAGCCTGAAGTAA
. : . : . : . : . : . :
rJMFF019F22- ACACTGTACGACCCTACTGGAAAAGGGAACTCTACCTCACCGTTAACTTCAAACCACCAG
JMFN045O17+ ACACTGTACGACCCTACTGGAAAAGGGAACTCTACCTCACCGTTAACTTCAAACCACCAG
rJMFF010J02- ACACTGTACGACCCTACTGGAAAAGGGAACTCTACCTCACCGTTAACTTCAAACCACCAG
rJMSF036K20- ACACTGTACGACCCTACTGGAAAAGGGAACCCTACCTCACCGTTAACTTCAAACCACCAG
JMFN005C13+ GAAAAGGGAAATCTACCTCACCGTTAACTTCAAACCACCAG
JMSF036K20+ CCTACTGGAAAAGGGAACCCTACCTCACCGTTAACTTCAAACCACCAG
____________________________________________________________
consensus ACACTGTACGACCCTACTGGAAAAGGGAACTCTACCTCACCGTTAACTTCAAACCACCAG
. : . : . : . : . : . :
rJMFF019F22- ATTTGCTGAANGTATGCAACTGAACCGAATCTTGATTCTTCNGNTGGAATTCGA
JMFN045O17+ ATTTGCTGAAGGTATGCAACTGAACCGAATCT
rJMFF010J02- ATTTGCTGAAGGTATGCAACTGAACCGAATCTTGATTCTTCGGTTGGAATTCGATTCCAG
rJMSF036K20- ATTTGCTGAAGGTATGCAACTGAACCGAATCTTGATTCTTCGGTTGGAATTCGATTCCAG
JMFN005C13+ ATTTGCTGAAGGTATGCAACTGAACCGAATCTTGATTCTTCGGTTGGAATTCGATTCCAG
JMFF019F22+ TCTTCGGTTGGAATTCGATTCCAG
JMFF010J02+ TCTTCGGTTGGAATTCGATTCCAG
JMSF036K20+ ATTTGCTGAAGGTATGCAACTGAACCGAATCTTGATTCTTCGGTTGGAATTCGATTCCAG
____________________________________________________________
consensus ATTTGCTGAAGGTATGCAACTGAACCGAATCTTGATTCTTCGGTTGGAATTCGATTCCAG
. : . : . : . : . : . :
rJMFF010J02- TATCTCCTATCATCTATGCC
rJMSF036K20- TATCTCCTATCATCTATGCCCGTTATAGCCAACCCATTTGAAGCCATTGAAAGACAAATC
JMFN005C13+ TATCTCCTATCATCTATGCCCGTTATAGCCAACCCATTTGAAGCCATTGAAAGACAAATC
JMFF019F22+ TATCTCCTATCATCTATGCCCGTTATAGCCAACCCATTTGAAGCCATTGAAAGACAAATC
JMFF010J02+ TATCTCCTATCATCTATGCCCGTTATAGCCAACCCATTTGAAGCCATTGAAAGACAAATC
JMSF036K20+ TATCTCCTATCATCTATGCCCGTTATAGCCAACCCATTTGAAGCCATTGAAAGACAAATC
____________________________________________________________
consensus TATCTCCTATCATCTATGCCCGTTATAGCCAACCCATTTGAAGCCATTGAAAGACAAATC
. : . : . : . : . : . :
rJMSF036K20- TTCCCAGTACTCTTATCCA
JMFN005C13+ TTCCCAGTACTCTTATCCAACCAAACTTTCTTTGTGCCGCCATCAAAAGAATTGGGAACG
JMFF019F22+ TTCCCAGTACTCTTATCCAACCAAACTTTCTTTGTGCCGCCATCAAAAGAATTGGGAACG
JMFF010J02+ TTCCCAGTACTCTTATCCAACCAAACTTTCTTTGTGCCGCCATCAAAAGAATTGGGAACG
JMSF036K20+ TTCCCAGTACTCTTATCCAACCAAACTTTCTTTGTGCCGCCATCAAAAGAATTGGGAACG
____________________________________________________________
consensus TTCCCAGTACTCTTATCCAACCAAACTTTCTTTGTGCCGCCATCAAAAGAATTGGGAACG
. : . : . : . : . : . :
JMFN005C13+ CAAAGCCTGGCATAAATATCCCTTTTGCACAAATTTACCGGAAATTCCTTATCTTCAAAA
JMFF019F22+ CAAAGCCTGGCATAAATATCCCTTTTGCACAAATTTACCGGAAATTCCTTATCTTCAAAA
JMFF010J02+ CAAAGCCTGGCATAAATATCCCTTTTGCACAAATTTACCGGAAATTCCTTATCTTCAAAA
JMSF036K20+ CAAAGCCTGGCATAAATATCCCTTTTGCACAAATTTACCGGAAATTCCTTATCTTCAAAA
____________________________________________________________
consensus CAAAGCCTGGCATAAATATCCCTTTTGCACAAATTTACCGGAAATTCCTTATCTTCAAAA
. : . : . : . : . : . :
JMFN005C13+ ACCCTTTGAATAAGCGACGCATAGTTCGCCGGAAGCTTCGATTCCCATACAAAGTCGGCG
JMFF019F22+ ACCCTTTGAATAAGCGACGCATAGTTCGCCGGAAGCTTCGATTCCCATACAAAGTCGGCG
JMFF010J02+ ACCCTTTGAATAAGCGACGCATAGTTCGCCGGAAGCTTCGATTCCCATACAAAGTCGGCG
JMSF036K20+ ACCCTTTGAATAAGCGACGCATAGTTCGCCGGAAGCTTCGATTCCCATACAAAGTCGGCG
____________________________________________________________
consensus ACCCTTTGAATAAGCGACGCATAGTTCGCCGGAAGCTTCGATTCCCATACAAAGTCGGCG
. : . : . : . : . : . :
JMFN005C13+ GAGGAGGCGCCCCTAAATGCTCGATTGAGCATCGCAAGCTGACAGATCTGCTGCGGGTCG
JMFF019F22+ GAGGAGGCGCCCCTAAATGCTCGATTGAGCATCGCAAGCTGACAGATCTGCTGCGGGTCG
JMFF010J02+ GAGGAGGCGCCCCTAAATGCTCGATTGAGCATCGCAAGCTGACAGATCTGCTGCGGGTCG
JMSF036K20+ GAGGAGGCGCCCCTAAATGCTCGATTGAGCATCGCAAGCTGACAGATCTGCTGCGGGTCG
____________________________________________________________
consensus GAGGAGGCGCCCCTAAATGCTCGATTGAGCATCGCAAGCTGACAGATCTGCTGCGGGTCG
. : . : . : . : . : . :
JMFN005C13+ AGGTGTACCAGCACCGACGCCACGCAGCTCTCCGGCAAGTCCCCGAGCCCGGGATTCGCC
JMFF019F22+ AGGTGTACCAGCACCGACGCCACGCAGCTCTCCGGCAAGTCCCCGAGCCCGGGATTCGCC
JMFF010J02+ AGGTGTACCAGCACCGACGCCACGCAGCTCTCCGGCAAGTCCCCGAGCCCGGGATTCGCC
JMSF036K20+ AGGTGTACCAGCACCGACGCCACGCAGCTCTCCGGCAAGTCCCCGAGCCCGGGATTCGCC
____________________________________________________________
consensus AGGTGTACCAGCACCGACGCCACGCAGCTCTCCGGCAAGTCCCCGAGCCCGGGATTCGCC
. : . : . : . : . : . :
JMFN005C13+ GGCATCGACGCGCACGCGCCGCCGTCCGGAAGCAAAAACGAGAACGCAGACCCCATCTTC
JMFF019F22+ GGCATCGACGCGCACGCGCCGCCGTCCGGAAGCAAAAACGAGAACGCAGACCCCATCTTC
JMFF010J02+ GGCATCGACGCGCACGCGCCGCCGTCCGGAAGCAAAAACGAGAACGCAGACCCCATCTTC
JMSF036K20+ GGCATCGACGCGCACGCGCCGCCGTCCGGAAGCAAAAACGAGAACGCAGACCCCATCTTC
____________________________________________________________
consensus GGCATCGACGCGCACGCGCCGCCGTCCGGAAGCAAAAACGAGAACGCAGACCCCATCTTC
. : . : . : . : . : . :
JMFN005C13+ CAAGATGGATGAAAGATTAAACCTCTCGATGCTATTCTCGAACGCGAAATGAAACCCCAA
JMFF019F22+ CAAGATGGATGAAAGATTAAACCTCTCGATGCTATTCTCGAACGCGAAATGAAACCCCAA
JMFF010J02+ CAAGATGGATGAAAGATTAAACCTCTCGATGCTATTCTCGAACGCGAAATGAAACCCCAA
JMSF036K20+ CAAGATGGATGAAAGATTAAACCTCTCGATGCTATTCTCGAACGCGAAATGAAACCCCAA
____________________________________________________________
consensus CAAGATGGATGAAAGATTAAACCTCTCGATGCTATTCTCGAACGCGAAATGAAACCCCAA
. : . : . : . : . : . :
JMFN005C13+ GCGTAGAGAGTGGAAATCTTATTCAGAAGGAATTGAAAAG
JMFF019F22+ GCGTAGAGAGTGGAAATCTTATTCAGAAGGAATTGAAAAGGAGGAGAAAGAGGGCGAAC
JMFF010J02+ GCGTAGAGAGTGGAAATCTTATTCAGAAGGAATTGAAAAGGAGGAGAAAGAGGGCGAAC
JMSF036K20+ GCGTAGAGAGTGGAAATCTTATTCAGAAGGAATTGAAAAGGAGGAGAAAGAGGGCGAACC
____________________________________________________________
consensus GCGTAGAGAGTGGAAATCTTATTCAGAAGGAATTGAAAAGGAGGAGAAAGAGGGCGAACC