Contig 003782:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046O03Sequence553003782 (8)599018072emb|CDX73583.1|1e-06BnaC08g24200D [Brassica napus]
JMFS077D04Sequence346003782 (8)ref|XP_003564475.1|3e-08PREDICTED: 60S ribosomal protein L24 [Brachypodium distachyon]
JMFS091E03Sequence615003782 (8)
JMSF004E22Sequence392003782 (8)131002907 (2)
JMSF036A16Sequence631003782 (8)722021531ref|XP_006657567.1|8e-05PREDICTED: 60S ribosomal protein L24-like isoform X1 [Oryza brachyantha] ref|XP_
JMSF038K21Sequence663003782 (8)862003782 (8)ref|XP_003564475.1|2e-05PREDICTED: 60S ribosomal protein L24 [Brachypodium distachyon]
JMSF043N06Sequence779003782 (8)716024664gb|AFY26880.1|5e-70CuZn superoxide dismutase [Ipomoea batatas]

Alignment

This contig is upended


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rJMSF038K21-                                   AATGAATCAGTGCGCATTTATTGATGTTCACATTG
                      ____________________________________________________________
consensus                                      AATGAATCAGTGCGCATTTATTGATGTTCACATTG
 
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rJMSF038K21-          CATATCAGATATTCTAGGTAATTTATCTTGGAACATCACCCAATATTCAGAATAANAAAT
                      ____________________________________________________________
consensus             CATATCAGATATTCTAGGTAATTTATCTTGGAACATCACCCAATATTCAGAATAANAAAT
 
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rJMSF038K21-          ACATCGAGAACATAAGCATAATGAATGTAATCTTGGACTATGAAACGTTTTGATCAGCCT
                      ____________________________________________________________
consensus             ACATCGAGAACATAAGCATAATGAATGTAATCTTGGACTATGAAACGTTTTGATCAGCCT
 
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rJMSF038K21-          TTCATATTTCTAAGACAGTTCAAATTCGAAAAGTCACTGTTCAGCCTCTATATAAAGCTC
                      ____________________________________________________________
consensus             TTCATATTTCTAAGACAGTTCAAATTCGAAAAGTCACTGTTCAGCCTCTATATAAAGCTC
 
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JMFS077D04-                                                               CTGAGTGC
rJMSF038K21-          CCATGATAGCAATCTGCAGTCCCAAATTCACCATCTATCCACTTCGAACCACCTGAGTGC
                      ____________________________________________________________
consensus             CCATGATAGCAATCTGCAGTCCCAAATTCACCATCTATCCACTTCGAACCACCTGAGTGC
 
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JMFS077D04-           AGCCTCCCGCCCTCCCTAACAGCATCCCTGGCTTCTGTTTTTTCAGCTCTCTTCTTCTGA
rJMSF038K21-          AGCCTCCCGCCCTCCCTAACAGCATCCCTGGCTTCTGTTTTTTCAGCTCTCTTCTTCTGA
                      ____________________________________________________________
consensus             AGCCTCCCGCCCTCCCTAACAGCATCCCTGGCTTCTGTTTTTTCAGCTCTCTTCTTCTGA
 
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JMFS077D04-           ATGACCTCCAAGGTTGCACCAACTATGGATCTAGAGTAAGGATTCCTTTTGGTACTGTAT
rJMSF038K21-          ATGACCTCCNAGGTTACACCAACTATGGATCTAGAGTAAGGATTCCTTTTGGTACTGTAT
                      ____________________________________________________________
consensus             ATGACCTCCAAGGTTGCACCAACTATGGATCTAGAGTAAGGATTCCTTTTGGTACTGTAT
 
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JMFS077D04-           CACATGGCTTAATCGGGAAGCTCTGGATATCAAGCTCTCATTTTGAACCACATATCCTAT
rJMSF038K21-          CACATGGCTTAATCGGGAAGCGCTGGATATCAAGCTCTCATTTTGAACCACATATCCTAC
                      ____________________________________________________________
consensus             CACATGGCTTAATCGGGAAGCTCTGGATATCAAGCTCTCATTTTGAACCACATATCCTAT
 
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JMFS077D04-           TATTTTATAGATAATAGCTTGATGTATGCATGTTACATTAACAGTCTTTACATTTCTTTA
rJMSF038K21-          TATTTTATAGATAATAGCTTGATGTATGCATGTTACATTAACAGTCTTTACATTTCTTTA
JMSF038K21+                       AATAGCTTGATGTATGCATGTTACATTAACAGTCTTTACATTTCTTTA
JMSF043N06+                            CTTGATGTATGCATGTTACATTAACAGTCTTTACATTTCTTTA
                      ____________________________________________________________
consensus             TATTTTATAGATAATAGCTTGATGTATGCATGTTACATTAACAGTCTTTACATTTCTTTA
 
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JMFS077D04-           ACTACCTTCTGATGTTTAGCCTTCATCTTCTGAATCAATTATTTTTGAAATTGCATTAAG
rJMSF038K21-          ACTACCTTCTGATGTTTAGCCTTCATCTTCTGAATCAATTATTTTTGAAATTGCATTAAG
JMSF038K21+           ACTACCTTCTGATGTTTAGCCTTCATCTTCTGAATCAATTATTTTTGAAATTGCATTAAG
JMSF043N06+           ACTACCTTCTGATGTTTAGCCTTCATCTTCTGAATCAATTATTTTTGAAATTGCATTAAG
JMFS091E03+               CCTTCTGATGTTTAGCCTTCATCTTCTGAATCAATTATTTTTGAAATTGCATTAAG
JMSF036A16+                                       TCTGAATCAATTATTTTTGAAATTGCATTAAG
                      ____________________________________________________________
consensus             ACTACCTTCTGATGTTTAGCCTTCATCTTCTGAATCAATTATTTTTGAAATTGCATTAAG
 
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JMFS077D04-           CTGCAAGAATT                                                 
rJMSF038K21-          CTGCAAGAATTAGTAGTTGTTAAATTAGTTAGTATCAGTTTACAACTTAGGATAGGATAC
JMSF038K21+           CTGCAAGAATTAGTAGTTGTTAAATTAGTTAGTATCAGTTTACAACTTAGGATAGGATAC
JMSF043N06+           CTGCAAGAATTAGTAGTTGTTAAATTAGTTAGTATCAGTTTACAACTTAGGATAGGATAC
JMFS091E03+           CTGCAAGAATTAGTAGTTGTTAAATTAGTTAGTATCAGTTTACAACTTAGGATAGGATAC
JMFF046O03+                                                      AACTTAGGATAGGATAC
JMSF036A16+           CTGCAAGAATTAGTAGTTGTTAAATTAGTTAGTATCAGTTTCCAACTTAGGATAGGATAC
                      ____________________________________________________________
consensus             CTGCAAGAATTAGTAGTTGTTAAATTAGTTAGTATCAGTTTACAACTTAGGATAGGATAC
 
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rJMSF038K21-          ATGAACTACAGAATTCATGCTCAATAAACAGGAATTTATATTC-CCAGTTTCTAATAAAG
JMSF038K21+           ATGAACTACAGAATTCATGCTCAATAAACAGGAATTTATATTC-CCAGTTTCTAATAAAG
JMSF043N06+           ATGAACTACAGAATTCATGCTCAATAAACAGGAATTTATATTC-CCAGTTTCTAATAAAG
JMFS091E03+           ATGAACTACAGAATTCATGCTCAATAAACAGGAATTTATATTC-CCAGTTTCTAATAAAG
JMFF046O03+           ATGAACTACAGAATTCATGCTCAATAAAGAGGAGTTTATATTCGTCAGTTTCTAGTAAAG
JMSF036A16+           ATGAACTACAGAATTCATGCTCAATAAACAGGAGTTTATATTC-CCAGTTTCTAATAAAG
                      ____________________________________________________________
consensus             ATGAACTACAGAATTCATGCTCAATAAACAGGAATTTATATTC-CCAGTTTCTAATAAAG
 
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rJMSF038K21-          AACTATAATTAAACATACATGATCCACAGAACATTGAACCAAATCACCAAAATATAGCAT
JMSF038K21+           AACTATAATTAAACATACATGATCCACAGAACATTGAACCAAATCACCAAAATATAGCAT
JMSF043N06+           AACTATAATTAAACATACATGATCCACAGAACATTGAACCAAATCACCAAAATATAGCAT
JMSF004E22+                                                        ACCAAAATATAGCAT
JMFS091E03+           AACTATAATTAAACATACATGATCCACAGAACATTGAACCAAATCACCAAAATATAGCAT
JMFF046O03+           AACTATAATTAAACATACATGATCCACAGAACATTGAACCAAATCACCAAAATATAGCAT
JMSF036A16+           AACTATAATTAAACATACATGATCCACAGAACATTGAACCAAATCACCAAAATATAGCAT
                      ____________________________________________________________
consensus             AACTATAATTAAACATACATGATCCACAGAACATTGAACCAAATCACCAAAATATAGCAT
 
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rJMSF038K21-          AAAGGTCTAGAGTTNAAATAAACAGCTTTTGAACCAAATCACCCTATTTGATGTACATAG
JMSF038K21+           AAAGGTCTAGAGTTTAAATAAACAGCTTTTGAACCAAATCACCCTATTTGATGTACATAG
JMSF043N06+           AAAGGTCTAGAGTTTAAATAAACAGCTTTTGAACCAAATCACCCTATTTGATGTACATAG
JMSF004E22+           AAAGGTCTAGAGTTTAAATAAACAGCTTTTGAACCAAATCACCCTATTTGATGTACATAG
JMFS091E03+           AAAGGTCTAGAGTTTAAATAAACAGCTTTTGAACCAAATCACCCTATTTGATGTACATAG
JMFF046O03+           AAAGGTGTAGAGTTTAAATAAAGGGCTTTTGAACCAAATCACCCTATTTGATGTACATAG
JMSF036A16+           AAAGGTCTAGAGTTTAAATAAACAGCTTTTGAACCAAATCACCCTATTTGATGTACATAG
                      ____________________________________________________________
consensus             AAAGGTCTAGAGTTTAAATAAACAGCTTTTGAACCAAATCACCCTATTTGATGTACATAG
 
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rJMSF038K21-          GAAAACACTAATCTAATCTTAAACTAACATGAGCAACAAAATAGGCAA            
JMSF038K21+           GAAAACACTAATCTAATCTTAAACTAACATGAGCAACAAAATAGGCAAGAAAATCGAAAT
JMSF043N06+           GAAAACACTAATCTAATCTTAAACTAACATGAAAAACAAAATAGGCAAGAAAATCGAAAT
JMSF004E22+           GAAAACACTAATCTAATCTTAAACTAACATGAAAAACAAAATAGGCAAGAAAATCGAAAT
JMFS091E03+           GAAAACACTAATCTAATCTTAAACTAACATGAAAAACAAAATAGGCAAGAAAATCGAAAT
JMFF046O03+           GAAAACACTAATCTAATCTTGAACTAACATGAACTACAAAATAGGCAAGAAAATCGAAAT
JMSF036A16+           GAAAACACTAATCTAATCTTGAACTAACATGAACAACAAAATAGGCAAGAAAATCGAAAT
                      ____________________________________________________________
consensus             GAAAACACTAATCTAATCTTAAACTAACATGAACAACAAAATAGGCAAGAAAATCGAAAT
 
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JMSF038K21+           AATTAGTCGAAAAAGTCAGTATAAAATAGATAGACCAGATAACTTATCTCATAGGTTTTC
JMSF043N06+           AATTAGTCGAAAAAGTCAGTATAAAATAGATAGACCAGATAACTTATCTCATAGGTTTTC
JMSF004E22+           AATTAGTCGAAAAAGTCAGTATAAAATAGATAGACCAGATAACTTATCTCATAGGTTTTC
JMFS091E03+           AATTAGTCGAAAAAGTCAGTATAAAATAGATAGACCAGATAACTTATCTCATAGGTTTTC
JMFF046O03+           AATTAGTCGAAAAAGTCAGTATAAAATAGATAGACCAGATAACTTATCTCATAGGTTTTC
JMSF036A16+           AATTAGTCGAAAAAGTCAGTATAAAATAGATAGACCAGATAACTTATCTCATAGGTTTTC
                      ____________________________________________________________
consensus             AATTAGTCGAAAAAGTCAGTATAAAATAGATAGACCAGATAACTTATCTCATAGGTTTTC
 
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JMSF038K21+           TGAAATTTGGGTTTGAAATCAACCTCGCGATTTTATAGTACAAGTGAAAGACTGATGTAG
JMSF043N06+           TGAAATTAGGGTTTGAAATCAACCTCGCGATTTTATAGTACAAGTGAAAGACTGATGTAG
JMSF004E22+           TGAAATTAGGGTTTGAAATCAACCTCGCGATTTTATAGTACAAGTGAAAGACTGATGTAG
JMFS091E03+           TGAAATTAGGGTTTGAAATCAACCTCGCGATTTTATAGTACAAGTGAAAGACTGATGTAG
JMFF046O03+           TGAAATTAGGGTTTGAAATCAACCTCGCGATTTTATAGTACAAGTGAAAGACTGATGTAG
JMSF036A16+           TGAAATTAGGGTTTGAAATCAACCTCGCGATTTTATAGTACAAGTGAAAGACTGATGTAG
                      ____________________________________________________________
consensus             TGAAATTAGGGTTTGAAATCAACCTCGCGATTTTATAGTACAAGTGAAAGACTGATGTAG
 
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JMSF038K21+           AGAACGATTATTGG                                              
JMSF043N06+           AAAACGATTATTGG                                              
JMSF004E22+           AAAACGATTATTGG                                              
JMFS091E03+           AAAACGATT---------------------------------------------------
JMFF046O03+           AGAACGATTATTGGCATATGAGTTGCTCGACAAACACATTTACAGCCTTCTACAACCAAA
JMSF036A16+           AGAACGATTATTGGCATATGAGTTGCTCGACAAACACATTTACAGCCTTCTACAACCAAA
                      ____________________________________________________________
consensus             AGAACGATTATTGGCATATGAGTTGCTCGACAAACACATTTACAGCCTTCTACAACCAAA
 
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JMFS091E03+           -ATTGGTCGTAGAGCTGAGATTATAGGTTGGATTGGAGACATTCGGACCAAGAGACAGAG
JMFF046O03+           AATTGGTGGTAGAGCTGAGATTATAGGTTGGATTGGAGACATTCGGACCAAGAGACAGAG
JMSF036A16+           AATTGGTCGTAGAGCTGAGATTATAGGTTGGATTGGAGACATTCGGACCAAGAGACAGAG
                      ____________________________________________________________
consensus             AATTGGTCGTAGAGCTGAGATTATAGGTTGGATTGGAGACATTCGGACCAAGAGACAGAG
 
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JMFS091E03+           AACGGGAGAATGTTCGAGAGAGAGGAGAGAGAGGA                         
JMFF046O03+           AACGGGAGAATGTTCGAGAGAGAGGAGAGAGAGGATAAAGAAGGCGGTGCGTCCGC    
JMSF036A16+           AACGGGAGAATGTTCGAGAGAGAGGAGAGAGAGGATAAAGAAGGCGAAGCGTCCGCTCTC
                      ____________________________________________________________
consensus             AACGGGAGAATGTTCGAGAGAGAGGAGAGAGAGGATAAAGAAGGCGGTGCGTCCGCTCTC