Contig 003781:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019B21Sequence756003781 (5)ref|XP_009794339.1|1e-121PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s
JMSF021F17Sequence625003781 (5)ref|XP_009794339.1|1e-96PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s782019307ref|XP_009794339.1|4e-77PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s
JMSF035P08Sequence689003781 (5)ref|XP_009794339.1|1e-121PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s
JMSF051I23Sequence649003781 (5)ref|XP_009794339.1|1e-111PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s736003781 (5)ref|XP_009794339.1|4e-118PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s

Alignment

This contig is upended


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rJMSF051I23-                                      GGGGGAATTGGAGTAAGTATTCAAGCCCTAGG
rJMSF019B21-                                     AGGGGGAATTGGAGTAAGTATTCAAGCCCTAGG
                      ____________________________________________________________
consensus                                        AGGGGGAATTGGAGTAAGTATTCAAGCCCTAGG
 
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rJMSF051I23-          ACTATCAAAGCTATTGCCACCAATCCATCTATCTTGACATTGACTAAAAATGTATCTTTT
rJMSF019B21-          ACTATCAAAGCTATTGCCACCAATCCATCTATCTTGACATTGACTAAAAATGTATCTTTT
                      ____________________________________________________________
consensus             ACTATCAAAGCTATTGCCACCAATCCATCTATCTTGACATTGACTAAAAATGTATCTTTT
 
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rJMSF051I23-          CCTTCAGCGTATTGATCTAAGATTGTACATCAACAAGGGCAAAGGCTACAAAGATTAACT
rJMSF019B21-          CCTTCAGCGTATTGATCTAAGATTGTACATCAACAAGGGCAAAGGCTACAAAGATTAACT
                      ____________________________________________________________
consensus             CCTTCAGCGTATTGATCTAAGATTGTACATCAACAAGGGCAAAGGCTACAAAGATTAACT
 
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rJMSF051I23-          CAGGGGAAGACATTAGATAAGCTTCTTCTTTTCGAAAAAGGTCTTCAAATGCCATAGCTG
rJMSF019B21-          CAGGGGAAGACATTAGATAAGCTTCTTCTTTTCGAAAAAGGTCTTCAAATGCCATAGCTG
                      ____________________________________________________________
consensus             CAGGGGAAGACATTAGATAAGCTTCTTCTTTTCGAAAAAGGTCTTCAAATGCCATAGCTG
 
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rJMSF051I23-          AATCCCAGCTACGGACAAACAAACAAGAACAGACACAAAGGTCAGCAAATTCATTTTGGA
rJMSF019B21-          AATCCCAGCTACGGACAAACAAACAAGAACAGACACAAAGGTCAGCAAATTCATTTTGGA
JMSF051I23+                      CGGACAAACAAACAAGAACAGACACAAAGGTCAGCAAATTCATTTTGGA
                      ____________________________________________________________
consensus             AATCCCAGCTACGGACAAACAAACAAGAACAGACACAAAGGTCAGCAAATTCATTTTGGA
 
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rJMSF051I23-          GTGAGTAGATCTATTAAGCTCCTGCATTTCTTCTTCTCTTTCACGAAGATAAAACATCTC
rJMSF019B21-          GTGAGTAGATCTATTAAGCTCCTGCATTTCTTCTTCTCTTTCACGAAGATAAAACATCTC
JMSF051I23+           GTGAGTAGATCTATTAAGCTCCTGCATTTCTTCTTCTCTTTCACGAAGATAAAACATCTC
JMSF021F17+                                                CTTTCACGAAGATAAAACATCTC
JMSF035P08+                                                CTTTCACGAAGATAAAACATCTC
                      ____________________________________________________________
consensus             GTGAGTAGATCTATTAAGCTCCTGCATTTCTTCTTCTCTTTCACGAAGATAAAACATCTC
 
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rJMSF051I23-          ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
rJMSF019B21-          ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
JMSF051I23+           ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
JMSF021F17+           ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
JMSF035P08+           ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
                      ____________________________________________________________
consensus             ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
 
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rJMSF051I23-          AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
rJMSF019B21-          AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
JMSF051I23+           AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
JMSF021F17+           AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
JMSF035P08+           AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
                      ____________________________________________________________
consensus             AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
 
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rJMSF051I23-          GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
rJMSF019B21-          GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
JMSF051I23+           GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
JMSF021F17+           GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
JMSF035P08+           GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
                      ____________________________________________________________
consensus             GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
 
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rJMSF051I23-          CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
rJMSF019B21-          CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
JMSF051I23+           CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
JMSF021F17+           CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
JMSF035P08+           CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
                      ____________________________________________________________
consensus             CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
 
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rJMSF051I23-          GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
rJMSF019B21-          GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
JMSF051I23+           GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
JMSF021F17+           GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
JMSF035P08+           GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
                      ____________________________________________________________
consensus             GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
 
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rJMSF051I23-          TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
rJMSF019B21-          TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
JMSF051I23+           TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
JMSF021F17+           TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
JMSF035P08+           TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
                      ____________________________________________________________
consensus             TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
 
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rJMSF051I23-          CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGA                
rJMSF019B21-          CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
JMSF051I23+           CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
JMSF021F17+           CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
JMSF035P08+           CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
                      ____________________________________________________________
consensus             CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
 
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rJMSF019B21-          GAA                                                         
JMSF051I23+           GAAGAAAAGCCCTAAGATCAGAACCAAAGCGAAAGCGCTGATATTTGTTCTCATTTTTCG
JMSF021F17+           GAAGAAAAGCCCTAAGATCAGAACCAAAGCGAAAGCGCTGATATTTGTTCTCATTTTTCG
JMSF035P08+           GAAGAAAAGCCCTAAGATCAGAACCAAAGCGAAAGCGCTGATATTTGTTCTCATTTTTCG
                      ____________________________________________________________
consensus             GAAGAAAAGCCCTAAGATCAGAACCAAAGCGAAAGCGCTGATATTTGTTCTCATTTTTCG
 
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JMSF051I23+           GGGAGATCTTTCCGGTGAAATTTTACTTTAGAAAACAAAGACGAGACGGAACGGAAGA  
JMSF021F17+           GGGAGATCTTTCCGGTGAAATTTTACTTT                               
JMSF035P08+           GGGAGATCTTTCCGGTGAAATTTTACTTTAGAAAACAAAGACGAGACGGAACGGAAGACC
                      ____________________________________________________________
consensus             GGGAGATCTTTCCGGTGAAATTTTACTTTAGAAAACAAAGACGAGACGGAACGGAAGACC