Contig 003781:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019B21Sequence756003781 (5)ref|XP_009794339.1|1e-121PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s
JMSF021F17Sequence625003781 (5)ref|XP_009794339.1|1e-96PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s782019307ref|XP_009794339.1|4e-77PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s
JMSF035P08Sequence689003781 (5)ref|XP_009794339.1|1e-121PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s
JMSF051I23Sequence649003781 (5)ref|XP_009794339.1|1e-111PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s736003781 (5)ref|XP_009794339.1|4e-118PREDICTED: transmembrane emp24 domain-containing protein p24delta9 [Nicotiana s

Alignment

This contig is upended


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rJMSF051I23- GGGGGAATTGGAGTAAGTATTCAAGCCCTAGG
rJMSF019B21- AGGGGGAATTGGAGTAAGTATTCAAGCCCTAGG
                      ____________________________________________________________
consensus AGGGGGAATTGGAGTAAGTATTCAAGCCCTAGG
 
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rJMSF051I23- ACTATCAAAGCTATTGCCACCAATCCATCTATCTTGACATTGACTAAAAATGTATCTTTT
rJMSF019B21- ACTATCAAAGCTATTGCCACCAATCCATCTATCTTGACATTGACTAAAAATGTATCTTTT
                      ____________________________________________________________
consensus ACTATCAAAGCTATTGCCACCAATCCATCTATCTTGACATTGACTAAAAATGTATCTTTT
 
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rJMSF051I23- CCTTCAGCGTATTGATCTAAGATTGTACATCAACAAGGGCAAAGGCTACAAAGATTAACT
rJMSF019B21- CCTTCAGCGTATTGATCTAAGATTGTACATCAACAAGGGCAAAGGCTACAAAGATTAACT
                      ____________________________________________________________
consensus CCTTCAGCGTATTGATCTAAGATTGTACATCAACAAGGGCAAAGGCTACAAAGATTAACT
 
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rJMSF051I23- CAGGGGAAGACATTAGATAAGCTTCTTCTTTTCGAAAAAGGTCTTCAAATGCCATAGCTG
rJMSF019B21- CAGGGGAAGACATTAGATAAGCTTCTTCTTTTCGAAAAAGGTCTTCAAATGCCATAGCTG
                      ____________________________________________________________
consensus CAGGGGAAGACATTAGATAAGCTTCTTCTTTTCGAAAAAGGTCTTCAAATGCCATAGCTG
 
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rJMSF051I23- AATCCCAGCTACGGACAAACAAACAAGAACAGACACAAAGGTCAGCAAATTCATTTTGGA
rJMSF019B21- AATCCCAGCTACGGACAAACAAACAAGAACAGACACAAAGGTCAGCAAATTCATTTTGGA
JMSF051I23+ CGGACAAACAAACAAGAACAGACACAAAGGTCAGCAAATTCATTTTGGA
                      ____________________________________________________________
consensus AATCCCAGCTACGGACAAACAAACAAGAACAGACACAAAGGTCAGCAAATTCATTTTGGA
 
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rJMSF051I23- GTGAGTAGATCTATTAAGCTCCTGCATTTCTTCTTCTCTTTCACGAAGATAAAACATCTC
rJMSF019B21- GTGAGTAGATCTATTAAGCTCCTGCATTTCTTCTTCTCTTTCACGAAGATAAAACATCTC
JMSF051I23+ GTGAGTAGATCTATTAAGCTCCTGCATTTCTTCTTCTCTTTCACGAAGATAAAACATCTC
JMSF021F17+ CTTTCACGAAGATAAAACATCTC
JMSF035P08+ CTTTCACGAAGATAAAACATCTC
                      ____________________________________________________________
consensus GTGAGTAGATCTATTAAGCTCCTGCATTTCTTCTTCTCTTTCACGAAGATAAAACATCTC
 
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rJMSF051I23- ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
rJMSF019B21- ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
JMSF051I23+ ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
JMSF021F17+ ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
JMSF035P08+ ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
                      ____________________________________________________________
consensus ATCATGGATGGATTGGACAGTTTCATACATCTTCTTCAGTTCCATTTCCATTACTTCAAC
 
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rJMSF051I23- AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
rJMSF019B21- AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
JMSF051I23+ AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
JMSF021F17+ AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
JMSF035P08+ AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
                      ____________________________________________________________
consensus AGAGCCTTTCTTGGCAACATTTGTCCAGTCCTTAGCAGCAATACCAGTCTTCCAATCGAA
 
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rJMSF051I23- GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
rJMSF019B21- GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
JMSF051I23+ GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
JMSF021F17+ GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
JMSF035P08+ GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
                      ____________________________________________________________
consensus GTCAATAGTAATGGTGATTGGAGGCTTATGATCTGCTGCAAAGAAACAAGCCATGTAATC
 
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rJMSF051I23- CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
rJMSF019B21- CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
JMSF051I23+ CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
JMSF021F17+ CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
JMSF035P08+ CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
                      ____________________________________________________________
consensus CCCGGCTTCTGCTGTCTGAAATGCAAACTGTCCATCCGGCACATTGTCCGCATTGTGATA
 
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rJMSF051I23- GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
rJMSF019B21- GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
JMSF051I23+ GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
JMSF021F17+ GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
JMSF035P08+ GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
                      ____________________________________________________________
consensus GCTATTCCCATATGTGGAAGTCACTCGAGCGGTGATTTTGTGAGTATCGGGTAAAGGGTA
 
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rJMSF051I23- TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
rJMSF019B21- TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
JMSF051I23+ TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
JMSF021F17+ TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
JMSF035P08+ TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
                      ____________________________________________________________
consensus TCCTTCATTAGGGTTGACTACGTGGTACTTGCCAACCGTCATGGAGTTGCTTTTGATATC
 
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rJMSF051I23- CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGA
rJMSF019B21- CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
JMSF051I23+ CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
JMSF021F17+ CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
JMSF035P08+ CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
                      ____________________________________________________________
consensus CTCAGCTATGCATTTGGATTTACCGGATTCCAGATCGAATCGGAGCGATTGGATTTGGGT
 
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rJMSF019B21- GAA
JMSF051I23+ GAAGAAAAGCCCTAAGATCAGAACCAAAGCGAAAGCGCTGATATTTGTTCTCATTTTTCG
JMSF021F17+ GAAGAAAAGCCCTAAGATCAGAACCAAAGCGAAAGCGCTGATATTTGTTCTCATTTTTCG
JMSF035P08+ GAAGAAAAGCCCTAAGATCAGAACCAAAGCGAAAGCGCTGATATTTGTTCTCATTTTTCG
                      ____________________________________________________________
consensus GAAGAAAAGCCCTAAGATCAGAACCAAAGCGAAAGCGCTGATATTTGTTCTCATTTTTCG
 
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JMSF051I23+ GGGAGATCTTTCCGGTGAAATTTTACTTTAGAAAACAAAGACGAGACGGAACGGAAGA
JMSF021F17+ GGGAGATCTTTCCGGTGAAATTTTACTTT
JMSF035P08+ GGGAGATCTTTCCGGTGAAATTTTACTTTAGAAAACAAAGACGAGACGGAACGGAAGACC
                      ____________________________________________________________
consensus GGGAGATCTTTCCGGTGAAATTTTACTTTAGAAAACAAAGACGAGACGGAACGGAAGACC