Contig 003779:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF042M07+                                                      CGCCTGCGCCGCCAAAT
                      ____________________________________________________________
consensus                                                        CGCCTGCGCCGCCAAAT
 
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JMSF042M07+           GCATCACGTGCGTGAACGCCACCATTTCAAAAAGCTTGGCCAACAAACGGCCGTCGTCGA
                      ____________________________________________________________
consensus             GCATCACGTGCGTGAACGCCACCATTTCAAAAAGCTTGGCCAACAAACGGCCGTCGTCGA
 
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JMSF042M07+           CGTCGGCCTCCACCACGAAGATCCCCTGCGCGCCGAGCAATTCCCGCCGCGATTTCTTCA
JMSF023D02+                   TCCACCACGAAGATCCCCTGCGCGCCGAGCAATTCCCGCCGCGATTTCTTCA
JMSF035O11+                                     TGCGCGCCGAGCAATTCCCGCCGCGATTTCTTCA
                      ____________________________________________________________
consensus             CGTCGGCCTCCACCACGAAGATCCCCTGCGCGCCGAGCAATTCCCGCCGCGATTTCTTCA
 
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JMSF042M07+           GCGACGGGTCGTAGTAGTCGTTGAAGTTGTCCAGCCCCACCACCCCGTCGCCGCGCTTTT
JMSF023D02+           GCGACGGGTCGTAGTAGTCGTTGAAGTTGTCCAGCCCCACCACCCCGTCGCCGCGCTTTT
JMSF035O11+           GCGACGGGTCGTAGTAGTCGTTGAAGTTGTCCAGCCCCACCACCCCGTCGCCGCGCTTTT
                      ____________________________________________________________
consensus             GCGACGGGTCGTAGTAGTCGTTGAAGTTGTCCAGCCCCACCACCCCGTCGCCGCGCTTTT
 
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JMSF042M07+           TCAGGGCCAGGGACACGTGGCTCCCGACGAATCCGGCGGCGCCGGTTACCAACACCGACA
JMSF023D02+           TCAGGGCCAGGGACACGTGGCTCCCGACGAATCCGGCGGCGCCGGTTACCAACACCGACA
JMSF035O11+           TCAGGGCCAGGGACACGTGGCTCCCGACGAATCCGGCGGCGCCGGTTACCAACACCGACA
                      ____________________________________________________________
consensus             TCAGGGCCAGGGACACGTGGCTCCCGACGAATCCGGCGGCGCCGGTTACCAACACCGACA
 
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JMSF042M07+           TCCCGTTGTGGCGCCGGATCTGAGCGGAGGCGCGTACCTGTCTCTCCCAATGGAGCCCGC
JMSF023D02+           TCCCGTTGTGGCGCCGGATCTGAGCGGAGGCGCGTACCTGTCTCTCCCAATGGAGCCCGC
JMSF035O11+           TCCCGTTGTGGCGCCGGATCTGAGCGGAGGCGCGTACCTGTCTCTCCCAATGGAGCCCGC
                      ____________________________________________________________
consensus             TCCCGTTGTGGCGCCGGATCTGAGCGGAGGCGCGTACCTGTCTCTCCCAATGGAGCCCGC
 
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JMSF042M07+           CCCACGTGGAGGAGAAATACCGGCTGCCGGAATCCATGAACGACTGAAAACTCAGATACG
JMSF023D02+           CCCACGTGGAGGAGAAATACCGGCTGCCGGAATCCATGAACGACTGAAAACTCAGATACG
JMSF035O11+           CCCACGTGGAGGAGAAATACCGGCTGCCGGAATCCATGAACGACTGAAAACTCAGATACG
                      ____________________________________________________________
consensus             CCCACGTGGAGGAGAAATACCGGCTGCCGGAATCCATGAACGACTGAAAACTCAGATACG
 
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JMSF042M07+           ACGCCGTCAGAGCAATCAAGAACAGCGCCCAAAGAAACATCGTACTCGTCGACGCGCAGC
JMSF023D02+           ACGCCGTCAGAGCAATCAAGAACAGCGCCCAAAGAAACATCGTACTCGTCGACGCGCAGC
JMSF035O11+           ACGCCGTCAGAGCAATCAAGAACAGCGCCCAAAGAAACATCGTACTCGTCGACGCGCAGC
                      ____________________________________________________________
consensus             ACGCCGTCAGAGCAATCAAGAACAGCGCCCAAAGAAACATCGTACTCGTCGACGCGCAGC
 
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JMSF042M07+           ACCGGTGGACCATCCGATTCATTGTGTGCCTCTCCTTGAACTTCCCCGGCGTCGACGGGA
JMSF023D02+           ACCGGTGGACCATCCGATTCATTGTGTGCCTCTCCTTGAACTTCCCCGGCGTCGACGGGA
JMSF035O11+           ACCGGTGGACCATCCGATTCATTGTGTGCCTCTCCTTGAACTTCCCCGGCGTCGACGGGA
                      ____________________________________________________________
consensus             ACCGGTGGACCATCCGATTCATTGTGTGCCTCTCCTTGAACTTCCCCGGCGTCGACGGGA
 
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JMSF042M07+           ACAGCTCCTCCTCCAACGACGGCATTTCTCAATTCTTTCCCAAAGTATCAATCTTTTCCC
JMSF023D02+           ACAGCTCCTCCTCCAACGACGGCATTTCTCAATTCTTTCCCAAAGTATCAATCTTTTCCC
JMSF035O11+           ACAGCTCCTCCTCCAACGACGGCATTTCTCAATTCTTTCCCAAAGTATCAATCTTTTCCC
                      ____________________________________________________________
consensus             ACAGCTCCTCCTCCAACGACGGCATTTCTCAATTCTTTCCCAAAGTATCAATCTTTTCCC
 
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JMSF042M07+           CCCTCAAATCTACCCCGGAATACCCAAAACAAGAAACAAAACCACCTGAATTTTCGACTA
JMSF023D02+           CCCTCAAATCTACCCCGGAATACCCAAAACAAGAAACAAAACCACCTGAATTTTCGACTA
JMSF035O11+           CCCTCAAATCTACCGCGGAATACCCAAAACAAGAAACAAAACCACCTGAATTTTCGACTA
                      ____________________________________________________________
consensus             CCCTCAAATCTACCCCGGAATACCCAAAACAAGAAACAAAACCACCTGAATTTTCGACTA
 
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JMSF042M07+           TAAAGCTTTCAAATCTAACACTGGGCTATTCGATTGAGGAACAAAAAAGAGGCAATTTTA
JMSF023D02+           TAAAGCTTTCAAATCTAACACTGGGCTATTCGATTGAGGAACAAAAAAGAGGCAATTTTA
JMSF035O11+           TAAAGCTTTCAAATCTAACACTGGGCTATTCGATTGAGGAACAAAAAAGAGGCAATTTTA
                      ____________________________________________________________
consensus             TAAAGCTTTCAAATCTAACACTGGGCTATTCGATTGAGGAACAAAAAAGAGGCAATTTTA
 
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JMSF042M07+           TATATTTTTATTAAAAGGCTAACAGATGCAGAGGCAATTGCGATATTGGATCTGCACC  
JMSF023D02+           TATATTTTTATTAAAAGGCTAACAGATGCAGAGGCAATTGCGATATTGGATCTGCACC  
JMSF035O11+           TATATTTTTATTAAAAGGCTAACAGATGCAGAGGCAATTGCGATATTGGATCTGCACCTC
                      ____________________________________________________________
consensus             TATATTTTTATTAAAAGGCTAACAGATGCAGAGGCAATTGCGATATTGGATCTGCACCTC