Contig 003778:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035N09-                                 ACCTCACAATATTTGCCTTTCTCTTTAAGGAAAAAAT
rJMSF036N09-                                 ACCTCACAATATTTGCCTTTCTCTTTAAGGAAAAAAT
                      ____________________________________________________________
consensus                                    ACCTCACAATATTTGCCTTTCTCTTTAAGGAAAAAAT
 
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rJMSF035N09-          AAAAAAATGAAAGTGACGTGGATAAGATCCGATTAATCCGGGGCAATAGATTTCATTATT
rJMSF036N09-          AAAAAAATGAAAGTGACGTGGATAAGATCCGATTAATCCGGGGCAATAGATTTCATTATT
                      ____________________________________________________________
consensus             AAAAAAATGAAAGTGACGTGGATAAGATCCGATTAATCCGGGGCAATAGATTTCATTATT
 
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rJMSF035N09-          CATACGTCCAACACGAAAATCTTTGCCTTTACAGTTGGACGGCAGTGATTCAATAATCCT
rJMSF036N09-          CATACGTCCAACACGAAAATCTTTGCCTTTACAGTTGGACGGCAGTGATTCAATAATCCT
                      ____________________________________________________________
consensus             CATACGTCCAACACGAAAATCTTTGCCTTTACAGTTGGACGGCAGTGATTCAATAATCCT
 
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rJMSF035N09-          CGCTGTCTTCCACAACGCGACTTCTCATCACCTCTAACCTTTCATTTCCGTTCCCGCCAT
rJMSF036N09-          CGCTGTCTTCCACAACGCGACTTCTCATCACCTCTAACCTTTCATTTCCGTTCCCGCCAT
                      ____________________________________________________________
consensus             CGCTGTCTTCCACAACGCGACTTCTCATCACCTCTAACCTTTCATTTCCGTTCCCGCCAT
 
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rJMSF035N09-          TCCATACAATGCCCACGTCATTCCATTCCATTCGGTGAAATCAAGATGACATCACCCGCT
rJMSF036N09-          TCCATACAATGCCCACGTCATTCCATTCCATTCGGTGAAATCAAGATGACATCACCCGCT
                      ____________________________________________________________
consensus             TCCATACAATGCCCACGTCATTCCATTCCATTCGGTGAAATCAAGATGACATCACCCGCT
 
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rJMSF035N09-          CCCACCCTTTCACGAATTTTTAAGAATAAAAGGAGCATTTTTTTATTTAACACATGATTA
rJMSF036N09-          CCCACCCTTTCACGAATTTTTAAGAATAAAAGGAGCATTTTTTTATTTAACACATGATTA
                      ____________________________________________________________
consensus             CCCACCCTTTCACGAATTTTTAAGAATAAAAGGAGCATTTTTTTATTTAACACATGATTA
 
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rJMSF035N09-          AGAAAAGATAAAAACATGGTTTACCGGTAAAACCTCTGCCATTAGTCCATCGTGGCACAA
rJMSF036N09-          AGAAAAGATAAAAACATGGTTTACCGGTAAAACCTCTGCCATTAGTCCATCGTGGCACAA
                      ____________________________________________________________
consensus             AGAAAAGATAAAAACATGGTTTACCGGTAAAACCTCTGCCATTAGTCCATCGTGGCACAA
 
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rJMSF035N09-          ACCTTGTCCTACACGTGGCATTCCCCGAGGACGTGGAAAAAAAATATTTTCGAATCCCAA
rJMSF036N09-          ACCTTGTCCTACACGTGGCATTCCCCGAGGACGTGGAAAAAAAATATTTTCGAATCCCAA
                      ____________________________________________________________
consensus             ACCTTGTCCTACACGTGGCATTCCCCGAGGACGTGGAAAAAAAATATTTTCGAATCCCAA
 
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rJMSF035N09-          AATTTCTTTTTAGTTTTTTGTAAAGAAAAATATGGAAATTAAATATTTCGTGACATTATT
rJMSF036N09-          AATTTCTTTTTAGTTTTTTGTAAAGAAAAATATGGAAATTAAATATTTCGTGACATTATT
                      ____________________________________________________________
consensus             AATTTCTTTTTAGTTTTTTGTAAAGAAAAATATGGAAATTAAATATTTCGTGACATTATT
 
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rJMSF035N09-          GTTCTTCCTGTACATCGGCGGTGGATGGTTTTAGTCTCTTCAGTTCTGGCGGCGGATCAC
rJMSF036N09-          GTTCTTCCTGTACATCGGCGGTGGATGGTTTTAGTCTCTTCAGTTCTGGCGGCGGATCAC
                      ____________________________________________________________
consensus             GTTCTTCCTGTACATCGGCGGTGGATGGTTTTAGTCTCTTCAGTTCTGGCGGCGGATCAC
 
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rJMSF035N09-          CTCCGGCGATCGGCGCGGCGACTGAAGATGTGGCGGAAACTAAAGCGGGATCTTCGGAGC
rJMSF036N09-          CTCCGGCGATCGGCGCGGCGACTGAAGATGTGGCGGAAACTAAAGCGGGATCTTCGGAGC
                      ____________________________________________________________
consensus             CTCCGGCGATCGGCGCGGCGACTGAAGATGTGGCGGAAACTAAAGCGGGATCTTCGGAGC
 
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rJMSF035N09-          GAGTGTCGCAACTGCCGCAATCCGTCGCGTCGAGGA                        
rJMSF036N09-          GAGTGTCGCAACTGCCGCAATCCGTCGCGTCGAGGACGCCGCAGGGGCTGTAAGCGTCAG
JMSF035N09+                              ATCCGTCGCGTCGAGGACGCCGCAGGGGCTGTAAGCGTCAG
                      ____________________________________________________________
consensus             GAGTGTCGCAACTGCCGCAATCCGTCGCGTCGAGGACGCCGCAGGGGCTGTAAGCGTCAG
 
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rJMSF036N09-          CCGGCGGCGGCGGCGGCGCCTCCATTCC                                
JMSF036N09+                                              TTGGGAGACGTGTCCACCAGGTACT
JMSF035N09+           CCGGCGGCGGCGGCGGCGCNTCCATTCCCCCAATTTTGGGAGACGTGTCCACCAGGTACT
                      ____________________________________________________________
consensus             CCGGCGGCGGCGGCGGCGCCTCCATTCCCCCAATTTTGGGAGACGTGTCCACCAGGTACT
 
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JMSF036N09+           CCTCCACTAGCCGGTGGCAGCTCCGCACCTTTTCCTGTCCCAAACACTTTCAGTTTTTTG
JMSF035N09+           CCTCCACTAGCCGGTGGCAGCTCCGCACCTTTTCCTGTCCCAAACACTTTCAGTTTTTTG
                      ____________________________________________________________
consensus             CCTCCACTAGCCGGTGGCAGCTCCGCACCTTTTCCTGTCCCAAACACTTTCAGTTTTTTG
 
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JMSF036N09+           TATTTTGGCCCACAATAAAAACAAGAATTTTACAGTTTCAACCTCAAATTATTTTCGCTA
JMSF035N09+           TATTTTGGCCCACAATAAAAACAAGAATTTTACAGTTTCAACCTCAAATTATTTTCGCTA
                      ____________________________________________________________
consensus             TATTTTGGCCCACAATAAAAACAAGAATTTTACAGTTTCAACCTCAAATTATTTTCGCTA
 
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JMSF036N09+           ATTATACATTTATACCCCGTACTTTATTTACTCTATTGTAGAAGCTTTCTGGAATATCCA
JMSF035N09+           ATTATACATTTATACCCCGTACTTTATTTACTCTATTGTAGAAGCTTTCTGGAATATCCA
                      ____________________________________________________________
consensus             ATTATACATTTATACCCCGTACTTTATTTACTCTATTGTAGAAGCTTTCTGGAATATCCA
 
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JMSF036N09+           TGGCGTCTCCAACGGCAGTTATCACGGCAGCCGCTGCTATCACCGACGGCGGGAATCCCA
JMSF035N09+           TGGCGTCTCCAACGGCAGTTATCACGGCAGCCGCTGCTATCACCGACGGCGGGAATCCCA
                      ____________________________________________________________
consensus             TGGCGTCTCCAACGGCAGTTATCACGGCAGCCGCTGCTATCACCGACGGCGGGAATCCCA
 
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JMSF036N09+           AGAAGTCTGTCACATGGGCGGTGTTGAGAACGAAATCCGAGAAGGTGCGAATAATATCTT
JMSF035N09+           AGAAGTCTGTCACATGGGCGGTGTTGAGAACGAAATCCGAGAAGGTGCGAATAATATCTT
                      ____________________________________________________________
consensus             AGAAGTCTGTCACATGGGCGGTGTTGAGAACGAAATCCGAGAAGGTGCGAATAATATCTT
 
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JMSF036N09+           CAAACCGGCGGCGAGGATCCGACGGCCGGGAAATACGGAGCTCGGAGATAAAGTAATCAA
JMSF035N09+           CAAACCGGCGGCGAGGATCCGACGGCCGGGAAATACGGAGCTCGGAGATAAAGTAATCAA
                      ____________________________________________________________
consensus             CAAACCGGCGGCGAGGATCCGACGGCCGGGAAATACGGAGCTCGGAGATAAAGTAATCAA
 
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JMSF036N09+           GGTAGTCAAAAGGAGTAACAGAGTGAAGGCGCCAGTTGAGAGCGTGCATGACTCGGAGCT
JMSF035N09+           GGTAGTCAAAAGGAGTAACAGAGTGAAGGCGCCAGTTGAGAGCGTGCATGACTCGGAGCT
                      ____________________________________________________________
consensus             GGTAGTCAAAAGGAGTAACAGAGTGAAGGCGCCAGTTGAGAGCGTGCATGACTCGGAGCT
 
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JMSF036N09+           CCATTTTCTGGATGGTTCTCGGTTCGAAAACGTATTTCGGGTCGAACAGCTGCAAGTCCA
JMSF035N09+           CCATTTTCTGGATGGTTCTCGGTTCGAAAACGTATTTCGGGTCGAACAGCTGCAAGTCCA
                      ____________________________________________________________
consensus             CCATTTTCTGGATGGTTCTCGGTTCGAAAACGTATTTCGGGTCGAACAGCTGCAAGTCCA
 
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JMSF036N09+           TCAGCACCGGCGCGTTTGGCTCCTCCATCTTCGCCGCCAGAGACAAACACGCCACCGACA
JMSF035N09+           TCAGCACCGGCGCGTTTGGCTCCTCCATCTTCGCCGCCAGAGACAAACACGCCACCGACA
                      ____________________________________________________________
consensus             TCAGCACCGGCGCGTTTGGCTCCTCCATCTTCGCCGCCAGAGACAAACACGCCACCGACA
 
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JMSF036N09+           GCAGCTGCAGCGGCCACCCGCCGACCTACACGCCATGAAAATACGAAATCCAAAA     
JMSF035N09+           GCAGCTGCAGCGGCCACCCGCCGACCTACACGCCATGAAAATACGAAATCCAAAACACGT
                      ____________________________________________________________
consensus             GCAGCTGCAGCGGCCACCCGCCGACCTACACGCCATGAAAATACGAAATCCAAAACACGT