| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012A20 | Sequence | 471 | 003777 (4) | ref|XP_009795542.1| | 2e-56 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 776 | 008180 (6) | gb|KDP29954.1| | 7e-106 | hypothetical protein JCGZ_18523 [Jatropha curcas] |
| JMFF039A14 | Sequence | 572 | 003777 (4) | ref|XP_009795542.1| | 2e-77 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 706 | 008180 (6) | gb|KDP29954.1| | 1e-118 | hypothetical protein JCGZ_18523 [Jatropha curcas] |
| JMFF050I01 | Sequence | 627 | 003777 (4) | ref|XP_009795542.1| | 3e-91 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 637 | 008180 (6) | ref|XP_011008074.1| | 1e-89 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth |
| JMSF035M21 | Sequence | 657 | 003777 (4) | ref|XP_009795542.1| | 4e-90 | PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth | 669 | 008180 (6) | ref|XP_002320530.2| | 4e-113 | hypothetical protein POPTR_0014s16720g [Populus trichocarpa] gb|EEE98845.2| hypo |
This contig is upended
. : . : . : . : . : . :
JMFF050I01+ G
____________________________________________________________
consensus G
. : . : . : . : . : . :
JMFF050I01+ TATTTGTGATGCTTCCAGATACCTGTCGAGCTCTGATCGAGTCCAATATAAAAGCGAGTA
JMFF039A14+ GCGAGTA
JMSF035M21+ TTGTGATGCTTCCAGATACCTGTCGAGCTCTGATCGAGTCCAATATAAAAGCGAGTA
____________________________________________________________
consensus TATTTGTGATGCTTCCAGATACCTGTCGAGCTCTGATCGAGTCCAATATAAAAGCGAGTA
. : . : . : . : . : . :
JMFF050I01+ AGGCTGTGTAGGCAAGGCAGAGATATAGTTACTCCATCTTGAAGACTTGATCAGACTTGC
JMFF039A14+ AGGCTGTGTAGGCAAGGCAGAGATATAGTTACTCCATCTTGAAGACTTGATCAGACTTGC
JMSF035M21+ AGGCTGTGTAGGCAAGGCAGAGATATAGTTACTCCATCTTGAAGACTTGATCAGACTTGC
____________________________________________________________
consensus AGGCTGTGTAGGCAAGGCAGAGATATAGTTACTCCATCTTGAAGACTTGATCAGACTTGC
. : . : . : . : . : . :
JMFF050I01+ CTCGCTGATTAAATACGTTGCTATCAACGGCCAATCAGGTACACCATAACGTTTTAACAC
JMFF039A14+ CTCGCTGATTAAATACGTTGCTATCAACGGCCAATCAGGTACACCATAACGTTTTAACAC
JMFF012A20+ GCCAATCAGGTACACCATAACGTTTTAACAC
JMSF035M21+ CTCGCTGATTAAATACGTTGCTATCAACGGCCAATCAGGTACACCATAACGTTTTAACAC
____________________________________________________________
consensus CTCGCTGATTAAATACGTTGCTATCAACGGCCAATCAGGTACACCATAACGTTTTAACAC
. : . : . : . : . : . :
JMFF050I01+ TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
JMFF039A14+ TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
JMFF012A20+ TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
JMSF035M21+ TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
____________________________________________________________
consensus TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
. : . : . : . : . : . :
JMFF050I01+ GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
JMFF039A14+ GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
JMFF012A20+ GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
JMSF035M21+ GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
____________________________________________________________
consensus GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
. : . : . : . : . : . :
JMFF050I01+ ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
JMFF039A14+ ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
JMFF012A20+ ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
JMSF035M21+ ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
____________________________________________________________
consensus ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
. : . : . : . : . : . :
JMFF050I01+ CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
JMFF039A14+ CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
JMFF012A20+ CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
JMSF035M21+ CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
____________________________________________________________
consensus CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
. : . : . : . : . : . :
JMFF050I01+ TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
JMFF039A14+ TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
JMFF012A20+ TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
JMSF035M21+ TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
____________________________________________________________
consensus TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
. : . : . : . : . : . :
JMFF050I01+ GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
JMFF039A14+ GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
JMFF012A20+ GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
JMSF035M21+ GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
____________________________________________________________
consensus GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
. : . : . : . : . : . :
JMFF050I01+ GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
JMFF039A14+ GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
JMFF012A20+ GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
JMSF035M21+ GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
____________________________________________________________
consensus GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
. : . : . : . : . : . :
JMFF050I01+ AAGCAAGCAAGCCACAGAGA
JMFF039A14+ AAGCAAGCAAGCCACAGAGA
JMFF012A20+ AAGCAAGCAAGCCACAGAGA
JMSF035M21+ AAGCAAGCAAGCCACAGAGACAGACGGAGAAGAAGATAAAACCAACCCGCTTAAACCTTC
____________________________________________________________
consensus AAGCAAGCAAGCCACAGAGACAGACGGAGAAGAAGATAAAACCAACCCGCTTAAACCTTC