Contig 003777:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012A20Sequence471003777 (4)ref|XP_009795542.1|2e-56PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth776008180 (6)gb|KDP29954.1|7e-106hypothetical protein JCGZ_18523 [Jatropha curcas]
JMFF039A14Sequence572003777 (4)ref|XP_009795542.1|2e-77PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth706008180 (6)gb|KDP29954.1|1e-118hypothetical protein JCGZ_18523 [Jatropha curcas]
JMFF050I01Sequence627003777 (4)ref|XP_009795542.1|3e-91PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth637008180 (6)ref|XP_011008074.1|1e-89PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth
JMSF035M21Sequence657003777 (4)ref|XP_009795542.1|4e-90PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-meth669008180 (6)ref|XP_002320530.2|4e-113hypothetical protein POPTR_0014s16720g [Populus trichocarpa] gb|EEE98845.2| hypo

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF050I01+ G
                      ____________________________________________________________
consensus G
 
. : . : . : . : . : . :
JMFF050I01+ TATTTGTGATGCTTCCAGATACCTGTCGAGCTCTGATCGAGTCCAATATAAAAGCGAGTA
JMFF039A14+ GCGAGTA
JMSF035M21+ TTGTGATGCTTCCAGATACCTGTCGAGCTCTGATCGAGTCCAATATAAAAGCGAGTA
                      ____________________________________________________________
consensus TATTTGTGATGCTTCCAGATACCTGTCGAGCTCTGATCGAGTCCAATATAAAAGCGAGTA
 
. : . : . : . : . : . :
JMFF050I01+ AGGCTGTGTAGGCAAGGCAGAGATATAGTTACTCCATCTTGAAGACTTGATCAGACTTGC
JMFF039A14+ AGGCTGTGTAGGCAAGGCAGAGATATAGTTACTCCATCTTGAAGACTTGATCAGACTTGC
JMSF035M21+ AGGCTGTGTAGGCAAGGCAGAGATATAGTTACTCCATCTTGAAGACTTGATCAGACTTGC
                      ____________________________________________________________
consensus AGGCTGTGTAGGCAAGGCAGAGATATAGTTACTCCATCTTGAAGACTTGATCAGACTTGC
 
. : . : . : . : . : . :
JMFF050I01+ CTCGCTGATTAAATACGTTGCTATCAACGGCCAATCAGGTACACCATAACGTTTTAACAC
JMFF039A14+ CTCGCTGATTAAATACGTTGCTATCAACGGCCAATCAGGTACACCATAACGTTTTAACAC
JMFF012A20+ GCCAATCAGGTACACCATAACGTTTTAACAC
JMSF035M21+ CTCGCTGATTAAATACGTTGCTATCAACGGCCAATCAGGTACACCATAACGTTTTAACAC
                      ____________________________________________________________
consensus CTCGCTGATTAAATACGTTGCTATCAACGGCCAATCAGGTACACCATAACGTTTTAACAC
 
. : . : . : . : . : . :
JMFF050I01+ TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
JMFF039A14+ TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
JMFF012A20+ TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
JMSF035M21+ TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
                      ____________________________________________________________
consensus TTGACCAGCATCTGGTACACTCCATTCCGAATCGGCAGTAATGACGAGCGAGGGAGGCAC
 
. : . : . : . : . : . :
JMFF050I01+ GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
JMFF039A14+ GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
JMFF012A20+ GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
JMSF035M21+ GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
                      ____________________________________________________________
consensus GAAGAGCAGCTTCTCTCCCTTCCTGATGTTCTTGAGAGCAACGAGACCTCTCTCTCCTAT
 
. : . : . : . : . : . :
JMFF050I01+ ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
JMFF039A14+ ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
JMFF012A20+ ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
JMSF035M21+ ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
                      ____________________________________________________________
consensus ATCCACTCTCTGTATGGCCATTTTCTGAGGAGGCATACCCGAGTCCGACAGCCATTTCTG
 
. : . : . : . : . : . :
JMFF050I01+ CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
JMFF039A14+ CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
JMFF012A20+ CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
JMSF035M21+ CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
                      ____________________________________________________________
consensus CAAAGCCGACGCGTTGTCGAGGGAGTCGGTATCACAACCCCAAGGGACTGTCTGGATTTT
 
. : . : . : . : . : . :
JMFF050I01+ TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
JMFF039A14+ TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
JMFF012A20+ TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
JMSF035M21+ TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
                      ____________________________________________________________
consensus TGCGGCCTCGGTGGAAACTGAGGAACACCGTATGGTGGTGAAACTTGTTGGGTTCCTTCT
 
. : . : . : . : . : . :
JMFF050I01+ GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
JMFF039A14+ GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
JMFF012A20+ GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
JMSF035M21+ GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
                      ____________________________________________________________
consensus GAAGAATGTGTGACAGATCGGACTGGAAAGGGCTCTGCGAGACTGAGAGAAAGGAGGGAG
 
. : . : . : . : . : . :
JMFF050I01+ GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
JMFF039A14+ GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
JMFF012A20+ GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
JMSF035M21+ GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
                      ____________________________________________________________
consensus GAGAGTGGATTGGAAGATGGTAGAAGCTTCAGGCATGGCTGAAGAGCGAGGGAGGGAAGC
 
. : . : . : . : . : . :
JMFF050I01+ AAGCAAGCAAGCCACAGAGA
JMFF039A14+ AAGCAAGCAAGCCACAGAGA
JMFF012A20+ AAGCAAGCAAGCCACAGAGA
JMSF035M21+ AAGCAAGCAAGCCACAGAGACAGACGGAGAAGAAGATAAAACCAACCCGCTTAAACCTTC
                      ____________________________________________________________
consensus AAGCAAGCAAGCCACAGAGACAGACGGAGAAGAAGATAAAACCAACCCGCTTAAACCTTC