Contig 003775:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035H15Sequence658003775 (2)emb|CAN65621.1|3e-125hypothetical protein VITISV_040853 [Vitis vinifera]782003775 (2)ref|XP_011072846.1|1e-85PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Sesamum indicu

Alignment

This contig is upended


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rJMSF035H15-                              ATAATGAAGAGATGTATTTACTGATTTACAAGGATAAAAG
                      ____________________________________________________________
consensus                                 ATAATGAAGAGATGTATTTACTGATTTACAAGGATAAAAG
 
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rJMSF035H15-          AACCATAGTCATGATAATATAGGAAAAGAGAGAATAAATTCATAAATAACTCAAACTATA
                      ____________________________________________________________
consensus             AACCATAGTCATGATAATATAGGAAAAGAGAGAATAAATTCATAAATAACTCAAACTATA
 
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rJMSF035H15-          AAACACAAAAAAACACACTTTGTATGGTTGATAGGTACACTTTAAAGTTCACGCTAAAAT
                      ____________________________________________________________
consensus             AAACACAAAAAAACACACTTTGTATGGTTGATAGGTACACTTTAAAGTTCACGCTAAAAT
 
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rJMSF035H15-          GCACTTTAGTAACACTCCACTTTAAAAGTTCTCATCCTTACTGTATTGTAATGTCAACAA
                      ____________________________________________________________
consensus             GCACTTTAGTAACACTCCACTTTAAAAGTTCTCATCCTTACTGTATTGTAATGTCAACAA
 
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rJMSF035H15-          TACAGCCCAGAATCAAAGCAGCAGAACTGAAGCAGATGGATTCATATATATATAAGATCG
                      ____________________________________________________________
consensus             TACAGCCCAGAATCAAAGCAGCAGAACTGAAGCAGATGGATTCATATATATATAAGATCG
 
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rJMSF035H15-          AGTTGATTATGAGTGTATTAAGTTGCAGGAAAATTCCCAGAGTTTGTTGGCCAAATCTGC
                      ____________________________________________________________
consensus             AGTTGATTATGAGTGTATTAAGTTGCAGGAAAATTCCCAGAGTTTGTTGGCCAAATCTGC
 
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rJMSF035H15-          ATCCTTAGCATGTGAACTTTGTTTACCTATGTTGCTGTCTGAAAAGTACTCTCCCCTTAC
                      ____________________________________________________________
consensus             ATCCTTAGCATGTGAACTTTGTTTACCTATGTTGCTGTCTGAAAAGTACTCTCCCCTTAC
 
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rJMSF035H15-          CCCCTTAACCTGAGGATGCAAAGCAGCATAGCATGTCGTCGCGGCTCCCTGTGGGATGTT
                      ____________________________________________________________
consensus             CCCCTTAACCTGAGGATGCAAAGCAGCATAGCATGTCGTCGCGGCTCCCTGTGGGATGTT
 
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rJMSF035H15-          TTTCAGCACGTATTTCGCGACCCAATTCACAACACCATCAATCAGACTGTGATAACGCCA
                      ____________________________________________________________
consensus             TTTCAGCACGTATTTCGCGACCCAATTCACAACACCATCAATCAGACTGTGATAACGCCA
 
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rJMSF035H15-          AAGGTTGGTGGCGATTGCTCCAGGATGGAGCGAATTCGCAGTTATCTCCACCCCTTCTTC
                      ____________________________________________________________
consensus             AAGGTTGGTGGCGATTGCTCCAGGATGGAGCGAATTCGCAGTTATCTCCACCCCTTCTTC
 
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rJMSF035H15-          CTTCAAGCGCCTTGCGAGTTCATTAGCATGCAATACATTAGCAAGCTTTGATTGTCCATA
JMSF035H15+             TCAAGCGCCTTGCGAGTTCATTAGCATGCAATACATTAGCAAGCTTTGATTGTCCATA
                      ____________________________________________________________
consensus             CTTCAAGCGCCTTGCGAGTTCATTAGCATGCAATACATTAGCAAGCTTTGATTGTCCATA
 
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rJMSF035H15-          AGCATATATAGGACTGTAACTTTCTTTGTCATTAATTTTATCAAACCGAATTCCTTCCTT
JMSF035H15+           AGCATATATAGGACTGTAACTTTCTTTGTCATTAATTTTATCAAACCGAATTCCTTCCTT
                      ____________________________________________________________
consensus             AGCATATATAGGACTGTAACTTTCTTTGTCATTAATTTTATCAAACCGAATTCCTTCCTT
 
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rJMSF035H15-          GTATGGGTATCGGTGTGCCTCTGATGAAACAATGACTATCCTTCCTTCCTTCTGGCTCTC
JMSF035H15+           GTATGGGTATCGGTGTGCCTCTGATGAAACAATGACTATCCTTCCTTCCTTCTGGCTCTC
                      ____________________________________________________________
consensus             GTATGGGTATCGGTGTGCCTCTGATGAAACAATGACTATCCTTCCTTCCTTCTGGCTCTC
 
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rJMSF035H15-          ACGAGCTGTATGTTTCATCTTT                                      
JMSF035H15+           ACGAGCTGTATGTTTCATCTTTTCCAGTAAAAGATTTGTCAGAAGAAAATGGCCAACATG
                      ____________________________________________________________
consensus             ACGAGCTGTATGTTTCATCTTTTCCAGTAAAAGATTTGTCAGAAGAAAATGGCCAACATG
 
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JMSF035H15+           ATTAGTAGCAAATTGCAATTCAATGTTGTCTTGCGAGAGCATGAATGGTGGAGCCATGAT
                      ____________________________________________________________
consensus             ATTAGTAGCAAATTGCAATTCAATGTTGTCTTGCGAGAGCATGAATGGTGGAGCCATGAT
 
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JMSF035H15+           CCCTGCATTGTTAATGAGGATGTTCAAGGGCAGGCCGGAAGAGTTATATTCTGAAGCAAA
                      ____________________________________________________________
consensus             CCCTGCATTGTTAATGAGGATGTTCAAGGGCAGGCCGGAAGAGTTATATTCTGAAGCAAA
 
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JMSF035H15+           CTTTCTAACAGACGCCATCGAGCTAAGATCCAATTCCATAACGTCGACTTTAGCATTAGG
                      ____________________________________________________________
consensus             CTTTCTAACAGACGCCATCGAGCTAAGATCCAATTCCATAACGTCGACTTTAGCATTAGG
 
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JMSF035H15+           AGTCTCTTTAGCTATGCTTTCTTGCAGTTTTCTGCCACTCTCCACAGCCCGAACTGCTAG
                      ____________________________________________________________
consensus             AGTCTCTTTAGCTATGCTTTCTTGCAGTTTTCTGCCACTCTCCACAGCCCGAACTGCTAG
 
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JMSF035H15+           AATCACATGTACACCGCGCAAGGCAAGGACACGAGCAGTCTCAGCACCAATGCCACTCGA
                      ____________________________________________________________
consensus             AATCACATGTACACCGCGCAAGGCAAGGACACGAGCAGTCTCAGCACCAATGCCACTCGA
 
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JMSF035H15+           GGCTCCTGTAACAATGGCAGTGAGGCCAGTTCCATTGATTCCTTGAGTAACTTCCTCAGC
                      ____________________________________________________________
consensus             GGCTCCTGTAACAATGGCAGTGAGGCCAGTTCCATTGATTCCTTGAGTAACTTCCTCAGC
 
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JMSF035H15+           TGTTGAGGAAGCTGAGAACCCAGATGCCCCTTTTCTTCCAAAAATCCACATATATACTCC
                      ____________________________________________________________
consensus             TGTTGAGGAAGCTGAGAACCCAGATGCCCCTTTTCTTCCAAAAATCCACATATATACTCC