| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004G24 | Sequence | 373 | 003770 (7) | ref|XP_010485236.1| | 3e-64 | PREDICTED: actin-4-like [Camelina sativa] | 781 | 001398 (4) | gb|AFD62266.1| | 5e-89 | actin, partial [Persea americana] |
| JMFF028E02 | Sequence | 532 | 003770 (7) | ref|XP_010485236.1| | 4e-107 | PREDICTED: actin-4-like [Camelina sativa] | 705 | 019113 | gb|AFD62266.1| | 2e-87 | actin, partial [Persea americana] |
| JMFF045E16 | Sequence | 625 | 003770 (7) | ref|XP_010446199.1| | 1e-138 | PREDICTED: actin-85C [Camelina sativa] | |||||
| JMFS100B05 | Sequence | 625 | 003770 (7) | ref|XP_010446199.1| | 2e-144 | PREDICTED: actin-85C [Camelina sativa] | |||||
| JMSF029P10 | Sequence | 677 | 003770 (7) | ref|XP_010446199.1| | 9e-92 | PREDICTED: actin-85C [Camelina sativa] | 720 | 001398 (4) | gb|AFD62266.1| | 3e-100 | actin, partial [Persea americana] |
| JMSF030P10 | Sequence | 678 | 003770 (7) | gb|KDP24628.1| | 8e-92 | hypothetical protein JCGZ_25544 [Jatropha curcas] | 245 | 001398 (4) | dbj|BAB60900.1| | 8e-27 | actin [Ipomoea nil] |
| JMSF034M12 | Sequence | 652 | 003770 (7) | ref|XP_010485236.1| | 6e-108 | PREDICTED: actin-4-like [Camelina sativa] | 727 | 001398 (4) | gb|AFD62266.1| | 2e-117 | actin, partial [Persea americana] |
This contig is upended
. : . : . : . : . : . :
JMFS100B05+ AGCCTCTCTCTGTCAATATCTTCATCAGGTGGTCTGTCAGGTCACGCCCTG
JMFF045E16+ TCACGCCCTG
____________________________________________________________
consensus AGCCTCTCTCTGTCAATATCTTCATCAGGTGGTCTGTCAGGTCACGCCCTG
. : . : . : . : . : . :
JMFS100B05+ CCAAATCAAGACGCAGGATTGCGTGTGGAAGGGCATAACCTTCATAAATGGGAACTGTAT
JMFF045E16+ CCAAATCAAGACGCAGGATTGCGTGTGGAAGGGCATAACCTTCATAAATGGGAACTGTAT
JMSF030P10+ CATAAATGGGAACTGTAT
JMSF029P10+ ATAAATGGGAACTGTAT
____________________________________________________________
consensus CCAAATCAAGACGCAGGATTGCGTGTGGAAGGGCATAACCTTCATAAATGGGAACTGTAT
. : . : . : . : . : . :
JMFS100B05+ GGCTCACACCATCTCCAGAATCAAGAACAATTCCTGTTGTACGACCACTGGCATAAAGGG
JMFF045E16+ GGCTCACACCATCTCCAGAATCAAGAACAATTCCTGTTGTACGACCACTGGCATAAAGGG
JMSF030P10+ GGCTCACACCATCTCCAGAATCAAGAACAATTCCTGTTGTACGACCACTGGCATAAAGGG
JMFF028E02+ TTGTACGACCACTGGCATAAAGGG
JMSF029P10+ GGCTCACACCATCTCCAGAATCAAGAACAATTCCTGTTGTACGACCACTGGCATAAAGGG
JMSF034M12+ CCTGTTGTACGACCACTGGCATAAAGGG
____________________________________________________________
consensus GGCTCACACCATCTCCAGAATCAAGAACAATTCCTGTTGTACGACCACTGGCATAAAGGG
. : . : . : . : . : . :
JMFS100B05+ AAAGAACTGCCTGAATGGCAACATACATGGCAGGGGTGTTGAAGGTTTCAAACATGATTT
JMFF045E16+ AAAGAACTGCCTGAATGGCAACATACATGGCAGGGGTGTTGAAGGTTTCAAACATGATTT
JMSF030P10+ AAAGAACTGCCTGAATGGCAACATACATGGCAGGGGTGTTGAAGGTTTCAAACATGATTT
JMFF028E02+ AAAGAACTGCCTGAATGGCAACATACATGGCAGGGGTGTTGAAGGTTTCAAACATGATTT
JMSF029P10+ AAAGAACTGCCTGAATGGCAACATACATGGCAGGGGTGTTGAAGGTTTCAAACATGATTT
JMSF034M12+ AAAGAACTGCCTGAATGGCAACATACATGGCAGGGGTGTTGAAGGTTTCAAACATGATTT
____________________________________________________________
consensus AAAGAACTGCCTGAATGGCAACATACATGGCAGGGGTGTTGAAGGTTTCAAACATGATTT
. : . : . : . : . : . :
JMFS100B05+ GTGTCATTTTCTCACGATTAGCCTTTGGGTTAAGAGGAGCTTCAGTGAGAAGTACTGGGT
JMFF045E16+ GTGTCATTTTCTCACGATTAGCCTTTGGGTTAAGAGGAGCTTCAGTGAGAAGTACTGGGT
JMSF030P10+ GTGTCATTTTCTCACGATTAGCCTTTGGGTTAAGAGGAGCTTCAGTGAGAAGTACTGGGT
JMFF028E02+ GTGTCATTTTCTCACGATTAGCCTTTGGGTTAAGAGGAGCTTCAGTGAGAAGTACTGGGT
JMSF029P10+ GTGTCATTTTCTCACGATTAGCCTTTGGGTTAAGAGGAGCTTCAGTGAGAAGTACTGGGT
JMSF034M12+ GTGTCATTTTCTCACGATTAGCCTTTGGGTTAAGAGGAGCTTCAGTGAGAAGTACTGGGT
____________________________________________________________
consensus GTGTCATTTTCTCACGATTAGCCTTTGGGTTAAGAGGAGCTTCAGTGAGAAGTACTGGGT
. : . : . : . : . : . :
JMFS100B05+ GCTCTTCTGGAGCCACACGAAGTTCATTGTAGAAGGTATGATGCCATATCTTCTCCATGT
JMFF045E16+ GCTCTTCTGGAGCCACACGAAGTTCATTGTAGAAGGTATGATGCCATATCTTCTCCATGT
JMSF030P10+ GCTCTTCTGGAGCCACACGAAGTTCATTGTAGAAGGTATGATGCCATATCTTCTCCATGT
JMFF028E02+ GCTCTTCTGGAGCCACACGAAGTTCATTGTAGAAGGTATGATGCCATATCTTCTCCATGT
JMFF004G24+ CACGAAGTTCATTGTAGAAGGTATGATGCCATATCTTNTCCATGT
JMSF029P10+ GCTCTTCTGGAGCCACACGAAGTTCATTGTAGAAGGTATGATGCCATATCTTCTCCATGT
JMSF034M12+ GCTCTTCTGGAGCCACACGAAGTTCATTGTAGAAGGTATGATGCCATATCTTCTCCATGT
____________________________________________________________
consensus GCTCTTCTGGAGCCACACGAAGTTCATTGTAGAAGGTATGATGCCATATCTTCTCCATGT
. : . : . : . : . : . :
JMFS100B05+ CATCCCAGTTGTTGACAATTCCATGCTCGATCGGGTACTTTAGGGTCAAAATACCTCTCT
JMFF045E16+ CATCCCAGTTGTTGACAATTCCATGCTCGATCGGGTACTTTAGGGTCAAAATACCTCTCT
JMSF030P10+ CATCCCAGTTGTTGACAATTCCATGCTCGATCGGGTACTTTAGGGTCAAAATACCTCTCT
JMFF028E02+ CATCCCAGTTGTTGACAATTCCATGCTCGATCGGGTACTTTAGGGTCAAAATACCTCTCT
JMFF004G24+ CATCCCAGTTGTTGACAATTCCATGCTCGATCGGGTACTTTAGGGTCAAAATACCTCTCT
JMSF029P10+ CATCCCAGTTGTTGACAATTCCATGCTCGATCGGGTACTTTAGGGTCAAAATACCTCTCT
JMSF034M12+ CATCCCAGTTGTTGACAATTCCATGCTCGATCGGGTACTTTAGGGTCAAAATACCTCTCT
____________________________________________________________
consensus CATCCCAGTTGTTGACAATTCCATGCTCGATCGGGTACTTTAGGGTCAAAATACCTCTCT
. : . : . : . : . : . :
JMFS100B05+ TGGATTGAGCCTCATCACCAACATAGGCATCCTTCTGGCCCATGCCAACCATCACACCAG
JMFF045E16+ TGGATTGAGCCTCATCACCAACATAGGCATCCTTCTGGCCCATGCCAACCATCACACCAG
JMSF030P10+ TGGATTGAGCCTCATCACCAACATAGGCATCCTTCTGGCCCATGCCAACCATCACACCAG
JMFF028E02+ TGGATTGAGCCTCATCACCAACATAGGCATCCTTCTGGCCCATGCCAACCATCACACCAG
JMFF004G24+ TGGATTGAGCCTCATCACCAACATAGGCATCCTTCTGGCCCATGCCAACCATCACACCAG
JMSF029P10+ TGGATTGAGCCTCATCACCAACATAGGCATCCTTCTGGCCCATGCCAACCATCACACCAG
JMSF034M12+ TGGATTGAGCCTCATCACCAACATAGGCATCCTTCTGGCCCATGCCAACCATCACACCAG
____________________________________________________________
consensus TGGATTGAGCCTCATCACCAACATAGGCATCCTTCTGGCCCATGCCAACCATCACACCAG
. : . : . : . : . : . :
JMFS100B05+ TGTGACGAGGGCGTCC-AACAATGCTGGGGAACACAGCCCTTGGAGCATCATCTCCAGCA
JMFF045E16+ TGTGACGAGGGCGTCC-AACAATGCTGGGGAACACAGCCCTTGGAGCATCATCTCCAGCA
JMSF030P10+ TGTGACGAGGGCGTCCAAACAATGCTGGGGAACACAGCCCTTGGAGCATCATCTCCAGCA
JMFF028E02+ TGTGACGAGGGCGTCC-AACAATGCTGGGGAACACAGCCCTTGGAGCATCATCTCCAGCA
JMFF004G24+ TGTGACGAGGGCGTCC-AACAATGCTGGGGAACACAGCCCTTGGAGCATCATCTCCAGCA
JMSF029P10+ TGTGACGAGGGCGTCCAAACAATGCTGGGGAACACAGCCCTTGGAGCATCATCTCCAGCA
JMSF034M12+ TGTGACGAGGGCGTCC-AACAATGCTGGGGAACACAGCCCTTGGAGCATCATCTCCAGCA
____________________________________________________________
consensus TGTGACGAGGGCGTCC-AACAATGCTGGGGAACACAGCCCTTGGAGCATCATCTCCAGCA
. : . : . : . : . : . :
JMFS100B05+ AATCCGGCCTTGACCATTCCTGTCCCATTGTCACAGACAAGAGGCTGGATATCCTCACCT
JMFF045E16+ AATCCGGCCTTGACCATTCCTGTCCCATTGTCACAGACAAGAGGCTGGATATCCTCACCT
JMSF030P10+ AATCCGGCCTTGACCATTCCTGTCCCATTGTCACAGACAAGAGGCTGGATATCCTCACCT
JMFF028E02+ AATCCGGCCTTGACCATTCCTGTCCCATTGTCACAGACAAGAGGCTGGATATCCTCACCT
JMFF004G24+ AATCCGGCCTTGACCATTCCTGTCCCATTGTCACAGACAAGAGGCTGGATATCCTCACCT
JMSF029P10+ AATCCGGCCTTGACCATTCCTGTCCCATTGTCACAGACAAGAGGCTGGATATCCTCACCT
JMSF034M12+ AATCCGGCCTTGACCATTCCTGTCCCATTGTCACAGACAAGAGGCTGGATATCCTCACCT
____________________________________________________________
consensus AATCCGGCCTTGACCATTCCTGTCCCATTGTCACAGACAAGAGGCTGGATATCCTCACCT
. : . : . : . : . : . :
JMFS100B05+ TCGGCCATCTTGTAATATCTTTGAGGGTTTGGAAG
JMFF045E16+ TCGGCCATCTTCTAATATCTTTGAGGGTTTGGAAGAGATGGGTTTGTGTGTGTGAT
JMSF030P10+ TCGGCCATCTTNTAATATCTTTGAGGGTTTGGAAGAGATGGGTTTGTGTGTGTGATGAGG
JMFF028E02+ TCGGCCATCTTCTAATATCTTTGAGGGTTTGGAAGAGATGGGTTTGTGTGTGTGATGAGG
JMFF004G24+ TCGGCCATCTTCTAATATCTTTGAGGGTTTGGAAGAGATGGGTTTGTGTGTGTGATGAGG
JMSF029P10+ TCGGCCATCTTCTAATATCTTTGAGGGTTTGGAAGAGATGGGTTTGTGTGTGTGATGAGG
JMSF034M12+ TCGGCCATCTTCTAATATCTTTGAGGGTTTGGAAGAGATGGGTT--TGTGTGTGATGAGG
____________________________________________________________
consensus TCGGCCATCTTCTAATATCTTTGAGGGTTTGGAAGAGATGGGTTTGTGTGTGTGATGAGG
. : . : . : . : . : . :
JMSF030P10+ CGTTGTGGCTCTCTCCCTCGTGTATTTACAGAGAAGAATGGTTTGGTACTGGGGGGCTTA
JMFF028E02+ CGTTGTGGCTCTCTCCCTCGTGTATTTAC
JMFF004G24+ CGTTGTGGCTCTCTCCCTCGTGTATTTAC
JMSF029P10+ CGTTGTGGCTCTCTCCCTCGTGTATTTACAGAGAAGAATGGTTTGGTACTGGGGGGCTTA
JMSF034M12+ CGTTGTGGCTCTCTCCCTCGTGTATTTACAGAGAAGAATGGTTTGGTACTGGGGGGCTTA
____________________________________________________________
consensus CGTTGTGGCTCTCTCCCTCGTGTATTTACAGAGAAGAATGGTTTGGTACTGGGGGGCTTA
. : . : . : . : . : . :
JMSF030P10+ GGTTTAAACGGAAAGCAGAAAAGTCTCGGTCAGCCAGGAACGAAATTCTGGTGA
JMSF029P10+ GGTTTAAACGGAAAGCAGAAAAGTCTCGGTCAGCCAGGAACGAAATTCTGGTGA
JMSF034M12+ GGTTTAAACGGAAAGCAGAAAAGTCTCGGTCAGCCAGGAACGAAATTCTGGTGAAATTTC
____________________________________________________________
consensus GGTTTAAACGGAAAGCAGAAAAGTCTCGGTCAGCCAGGAACGAAATTCTGGTGAAATTTC