Contig 003768:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017B16Sequence589003768 (6)ref|XP_009773869.1|5e-09PREDICTED: la-related protein 1A [Nicotiana sylvestris] ref|XP_009773870.1| PRED
JMFS023E01Sequence501003768 (6)ref|XP_009591974.1|7e-10PREDICTED: la-related protein 1A [Nicotiana tomentosiformis] ref|XP_009591975.1|
JMFS090H09Sequence620003768 (6)ref|XP_009773869.1|5e-09PREDICTED: la-related protein 1A [Nicotiana sylvestris] ref|XP_009773870.1| PRED
JMFS149A08Sequence515003768 (6)ref|XP_009773869.1|5e-09PREDICTED: la-related protein 1A [Nicotiana sylvestris] ref|XP_009773870.1| PRED
JMSF034K01Sequence694003768 (6)ref|XP_009773869.1|3e-09PREDICTED: la-related protein 1A [Nicotiana sylvestris] ref|XP_009773870.1| PRED747010027 (2)ref|XP_009773869.1|3e-60PREDICTED: la-related protein 1A [Nicotiana sylvestris] ref|XP_009773870.1| PRED
JMSF039M04Sequence691003768 (6)ref|XP_011080478.1|3e-13PREDICTED: la-related protein 1A [Sesamum indicum]831010027 (2)ref|XP_009773869.1|1e-97PREDICTED: la-related protein 1A [Nicotiana sylvestris] ref|XP_009773870.1| PRED

Alignment

This contig is upended


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JMSF039M04+                                                                   GCCA
                      ____________________________________________________________
consensus                                                                     GCCA
 
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JMSF039M04+           TGGNCACTGGAAATGGGGGTACACCATTTGGCCTGTGCCTTGGACCTGCTTTTGGNTGGC
JMFS090H09+                                               GCCTTGGACCTGCTTTTGGTTGGC
JMSF034K01+                                     TTTGGCCTGTGCCTTGGACCTGCTTTTGGTTGGC
                      ____________________________________________________________
consensus             TGGNCACTGGAAATGGGGGTACACCATTTGGCCTGTGCCTTGGACCTGCTTTTGGTTGGC
 
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JMSF039M04+           GTGCAGGCAGGGGCCTATTTGAAGGTTTAGCATTGGCATGCCCCTGAAACTTCCGCTGCT
JMFS090H09+           GTGCAGGCAGGGGCCTATTTGAAGGTTTAGCATTGGCATGCCCCTGAAACTTCCGCTGCT
JMFF017B16+                                                           ACTTCCGCTGCT
JMSF034K01+           GTGCAGGCAGGGGCCTATTTGAAGGTTTAGCATTGGCATGCCCCTGAAACTTCCGCTGCT
                      ____________________________________________________________
consensus             GTGCAGGCAGGGGCCTATTTGAAGGTTTAGCATTGGCATGCCCCTGAAACTTCCGCTGCT
 
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JMSF039M04+           CTCCGGCGCCCGAAACCGGAGGTGGAGGAGCGGGAGTAGCGTCGGCCGCCTTGGTTTGCT
JMFS090H09+           CTCCGGCGCCCGAAACCGGAGGTGGAGGAGCGGGAGTAGCGTCGGCCGCCTTGGTTTGCT
JMFF017B16+           CTCCGGCGCCCGAAACCGGAGGTGGAGGAGCGGGAGTAGCGTCGGCCGCCTTGGTTTGCT
JMSF034K01+           CTCCGGCGCCCGAAACCGGAGGTGGAGGAGCGGGAGTAGCGTCGGCCGCCTTGGTTTGCT
                      ____________________________________________________________
consensus             CTCCGGCGCCCGAAACCGGAGGTGGAGGAGCGGGAGTAGCGTCGGCCGCCTTGGTTTGCT
 
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JMSF039M04+           GCGGCGGCGGCGGAGGCGGCGACTTGGATGAACCTGAACCAGAGCCGTTAGTCTTGAACC
JMFS090H09+           GCGGCGGCGGCGGAGGCGGCGACTTGGATGAACCTGAACCAGAGCCGTTAGTCTTGAGCC
JMFF017B16+           GCGGCGGCGGCGGAGGCGGCGACTTGGATGAACCTGAACCAGAGCCGTTAGTCTTGAGCC
JMFS023E01+                                            CTGAACCAGAGCCGTTAGTCTTGAGCC
JMFS149A08+                              CGACTTGGATGAACCTGAACCAGAGCCGTTAGTCTTGAGCC
JMSF034K01+           GCGGCGGCGGCGGAGGCGGCGACTTGGATGAACCTGAACCAGAGCCGTTAGTCTTGAGCC
                      ____________________________________________________________
consensus             GCGGCGGCGGCGGAGGCGGCGACTTGGATGAACCTGAACCAGAGCCGTTAGTCTTGAGCC
 
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JMSF039M04+           GCTGCTGAGCATCGGAAAGCGCAGGCCACGAATCAGAATCCGATGCCGCTACCGGCGACG
JMFS090H09+           GCTGCTGAGCATCGGAAAGCGCAGGCCACGAATCAGAATCCGATGCCGCTACCGGCGACG
JMFF017B16+           GCTGCTGAGCATCGGAAAGCGCAGGCCACGAATCAGAATCCGATGCCGCTACCGGCGACG
JMFS023E01+           GCTGCTGAGCATCGGAAAGCGCAGGCCACGAATCAGAATCCGATGCCGCTACCGGCGACG
JMFS149A08+           GCTGCTGAGCATCGGAAAGCGCAGGCCACGAATCAGAATCCGATGCCGCTACCGGCGACG
JMSF034K01+           GCTGCTGAGCATCGGAAAGCGCAGGCCACGAATCAGAATCCGATGCCGCTACCGGCGACG
                      ____________________________________________________________
consensus             GCTGCTGAGCATCGGAAAGCGCAGGCCACGAATCAGAATCCGATGCCGCTACCGGCGACG
 
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JMSF039M04+           AAATCTCGCCCGTCGCCTGCGGCGGCGTCTTCCAGTGCGACTTGGGGGGCCCACTGAGCC
JMFS090H09+           AAATCTCGCCCGTCGCCTGCGGCGGCGTCTTCCAGTGCGACTTGGGGGGCCCACTGAGCC
JMFF017B16+           AAATCTCGCCCGTCGCCTGCGGCGGCGTCTTCCAGTGCGACTTGGGGGGCCCACTGAGCC
JMFS023E01+           AAATCTCGCCCGTCGCCTGCGGCGGCGTCTTCCAGTGCGACTTGGGGGGCCCACTGAGCC
JMFS149A08+           AAATCTCGCCCGTCGCCTGCGGCGGCGTCTTCCAGTGCGACTTGGGGGGCCCACTGAGCC
JMSF034K01+           AAATCTCGCCCGTCGCCTGCGGCGGCGTCTTCCAGTGCGACTTGGGGGGCCCACTGAGCC
                      ____________________________________________________________
consensus             AAATCTCGCCCGTCGCCTGCGGCGGCGTCTTCCAGTGCGACTTGGGGGGCCCACTGAGCC
 
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JMSF039M04+           CCTGATGATCATCTCCGGCTCCCTCATTCTCCGCCATTCTCAATAACCTCTAATTTAACA
JMFS090H09+           CCTGATGATCATCTCCGGCTCCCTCATTCTCCGCCATTCTCAATAACCTCTAATTTAACA
JMFF017B16+           CCTGATGATCATCTCCGGCTCCCTCATTCTCCGCCATTCTCAATAACCTCTAATTTAACA
JMFS023E01+           CCTGATGATCATCTCCGGCTCCCTCATTCTCCGCCATTCTCAATAACCTCTAATTTAACA
JMFS149A08+           CCTGATGATCATCTCCGGCTCCCTCATTCTCCGCCATTCTCAATAACCTCTAATTTAACA
JMSF034K01+           CCTGATGATCATCTCCGGCTCCCTCATTCTCCGCCATTCTCAATAACCTCTAATTTAACA
                      ____________________________________________________________
consensus             CCTGATGATCATCTCCGGCTCCCTCATTCTCCGCCATTCTCAATAACCTCTAATTTAACA
 
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JMSF039M04+           ACCTAGTACACACGTAATCGCCTATCTCTATACCCCGTGCGATAACCGAAAACGATTTAA
JMFS090H09+           ACCTAGTACACACGTAATCGCCTATCTCTATACCCCGTGCGATAACCGAAAACGATTTAA
JMFF017B16+           ACCTAGTACACACGTAATCGCCTATCTCTATACCCCGTGCGATAACCGAAAACGATTTAA
JMFS023E01+           ACCTAGTACACACGTAATCGCCTATCTCTATACCCCGTGCGATAACCGAAAACGATTTAA
JMFS149A08+           ACCTAGTACACACGTAATCGCCTATCTCTATACCCCGTGCGATAACCGAAAACGATTTAA
JMSF034K01+           ACCTAGTACACACGTAATCGCCTATCTCTATACCCCGTGCGATAACCGAAAACGATTTAA
                      ____________________________________________________________
consensus             ACCTAGTACACACGTAATCGCCTATCTCTATACCCCGTGCGATAACCGAAAACGATTTAA
 
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JMSF039M04+           TCTCCTCTCAATGCCAAACAGAAAAAAGCCTGAAAACTGAAAAGCGTCGGCCCTGGTAAA
JMFS090H09+           TCTCCTCTCAATGCCAAACAGAAAAAAGCCTGAAAACTGAAAAGCGTCGGCCCTGGTAAA
JMFF017B16+           TCTCCTCTCAATGCCAAACAGAAAAAAGCCTGAAAACTGAAAAGCGTCGGCCCTGGTAAA
JMFS023E01+           TCTCCTCTCAATGCCAAACAGAAAAAAGCCTGAAAACTGAAAAGCGTCGGCCCTGGTAAA
JMFS149A08+           TCTCCTCTCAATGCCAAACAGAAAAAAGCCTGAAAACTGAAAAGCGTCGGCCCTGGTAAA
JMSF034K01+           TCTCCTCTCAATGCCAAACAGAAAAAAGCCTGAAAACTGAAAAGCGTCGGCCCTGGTAAA
                      ____________________________________________________________
consensus             TCTCCTCTCAATGCCAAACAGAAAAAAGCCTGAAAACTGAAAAGCGTCGGCCCTGGTAAA
 
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JMSF039M04+           ACAACGGCGTTCCAAATGCAATAACTAAACGAAACGAAAACGGCGACAACGGACCCCGCG
JMFS090H09+           ACAACGGCGTTCCAAATGCAATAACTAAACGAAACGAAAACGGCGACAACGGACCCCGCG
JMFF017B16+           ACAACGGCGTTCCAAATGCAATAACTAAACGAAACGAAAACGGCGACAACGGACCCCGCG
JMFS023E01+           ACAACGGCGTTCCAAATGCAATAACTAAACGAAACGAAAACGGCGACAACGGACCCCGCG
JMFS149A08+           ACAACGGCGTTCCAAATGCAATAACTAAACGAAACGAAAACGGCGACAACGGACCCCGCG
JMSF034K01+           ACAACGGCGTTCCAAATGCAATAACTAAACGAAACGAAAACGGCGACAACGGACCCCGCG
                      ____________________________________________________________
consensus             ACAACGGCGTTCCAAATGCAATAACTAAACGAAACGAAAACGGCGACAACGGACCCCGCG
 
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JMSF039M04+           GCGGTTGGCGGCGGCGGGACGGAGTATAGGGGACTGAAGTGTGTTGCAGTATGAGAGAGA
JMFS090H09+           GCGGTTGGCGGCGGCGGGACGGAGTATAGGGGACTGAAGTGTGTTGCAGTATGAGA    
JMFF017B16+           GCGGTTGGCGGCGGCGGGACGGAGTATAGGGGACTGAAGTGTGTTGCAGTATGAGAGAGA
JMFS023E01+           GCGGTTGGCGGCGGCGGGACGGAGTATAGGGGACTGAAGTGTGTTGCAGTATGAGAGAGA
JMFS149A08+           GCGGTTGGCGGCGGCGGGACGGAGTATAGGGGACTGAAGTGTGTTGCAGTATGAGAGAGA
JMSF034K01+           GCGGTTGGCGGCGGCGGGACGGAGTATAGGGGACTGAAGTGTGTTGCAGTATGAGAGAGA
                      ____________________________________________________________
consensus             GCGGTTGGCGGCGGCGGGACGGAGTATAGGGGACTGAAGTGTGTTGCAGTATGAGAGAGA
 
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JMSF039M04+           GAGCTGGAAGGGGTGTGTGTGTGTCT                                  
JMFF017B16+           GAGCTGGAAGGGGTGTGTGTGTGTCTAGGGTTGTACT                       
JMFS023E01+           GAGCTGGAAGGGGTGTGTGTGTGTCTAGGGTTGTACTGTGTAGGTTTTTTCAGA      
JMFS149A08+           GAGCTGGAAGGGGTGTGTGTGTGTCTAGGGTTGTACTGTGTAGGTTTTTTCAGA      
JMSF034K01+           GAGCTGGAAGGGGTGTGTGTGTGTCTAGGGTTGTACTGTGTAGGTTTTTTCAGACAAGTC
                      ____________________________________________________________
consensus             GAGCTGGAAGGGGTGTGTGTGTGTCTAGGGTTGTACTGTGTAGGTTTTTTCAGACAAGTC