Contig 003765:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-                      ATGATGGAAGAGTAAAGTGTTATGTTTTTAGAATGAAAGGAAACTTAA
                      ____________________________________________________________
consensus                         ATGATGGAAGAGTAAAGTGTTATGTTTTTAGAATGAAAGGAAACTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          ATACTGCCACTATTTGAGAATCAATGAAAAGGGAAGGGAAATCTATAGCTTGACATCAGT
                      ____________________________________________________________
consensus             ATACTGCCACTATTTGAGAATCAATGAAAAGGGAAGGGAAATCTATAGCTTGACATCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          AAAAATTCTCGTTTTATGAAAATGGAAATCTGCAGTGTTTCAGCCTCCGGATGCAGTTAG
                      ____________________________________________________________
consensus             AAAAATTCTCGTTTTATGAAAATGGAAATCTGCAGTGTTTCAGCCTCCGGATGCAGTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          GATGGCTCTGTTGCTACTCCGATTGTCTAGTGCTCCTTTGTGCCGCGGCCCCGGCCCCGG
                      ____________________________________________________________
consensus             GATGGCTCTGTTGCTACTCCGATTGTCTAGTGCTCCTTTGTGCCGCGGCCCCGGCCCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          GTAGTAAGCTCGAAAGGGTGGGAACTCCTTGGCTTCTCATTTCCTCTTGTGCACGTCTGA
JMSF034E24+                                                         TTGTGCACGTCTGA
                      ____________________________________________________________
consensus             GTAGTAAGCTCGAAAGGGTGGGAACTCCTTGGCTTCTCATTTCCTCTTGTGCACGTCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          TTTCTTCGGGATCCATATTTTCAACCAATTTAGGCATTACAAACACCACAAGCAGCATGA
JMSF034E24+           TTTCTTCGGGATCCATATTTTCAACCAATTTAGGCATTACAAACACCACAAGCAGCATGA
                      ____________________________________________________________
consensus             TTTCTTCGGGATCCATATTTTCAACCAATTTAGGCATTACAAACACCACAAGCAGCATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          AGCCAACCATCAAACCCATGGGGCTTTTTACTATAGACATTACGGAGAACGGTTCCCTAA
JMSF034E24+           AGCCAACCATCAAACCCATGGGGCTTTTTACTATAGACATTACGGAGAACGGTTCCCTAA
                      ____________________________________________________________
consensus             AGCCAACCATCAAACCCATGGGGCTTTTTACTATAGACATTACGGAGAACGGTTCCCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          TCTCATAGTACTGCTCCTCCCTCAATGGTTCCAACACTAGTTCAGTTAAACTCCTTCTAT
JMSF034E24+           TCTCATAGTACTGCTCCTCCCTCAATGGTTCCAACACTAGTTCAGTTAAACTCCTTCTAT
                      ____________________________________________________________
consensus             TCTCATAGTACTGCTCCTCCCTCAATGGTTCCAACACTAGTTCAGTTAAACTCCTTCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          TCTCCGTCAGTGCTGCTTGAACCTTACCTGGGTTTCTGGCACTCACATCAACTCGGACTG
JMSF034E24+           TCTCCGTCAGTGCTGCTTGAACCTTACCTGGGTTTCTGGCACTCACATCAACTCGGACTG
                      ____________________________________________________________
consensus             TCTCCGTCAGTGCTGCTTGAACCTTACCTGGGTTTCTGGCACTCACATCAACTCGGACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          GGGAGAAGAAATAGCCTATTGCATCCACTTCAATCAGATGCGTCCCAGCTGGCACGTTAT
JMSF034E24+           GGGAGAAGAAATAGCCTATTGCATCCACTTCAATCAGATGCGTCCCAGCTGGCACGTTAT
                      ____________________________________________________________
consensus             GGGAGAAGAAATAGCCTATTGCATCCACTTCAATCAGATGCGTCCCAGCTGGCACGTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          GGAATGAAAAATATCCATCAGGTCTCAGAAAAGTAACTCTTTGGCCACCATTGAGTAACA
JMSF034E24+           GGAATGAAAAATATCCATCAGGTCTCAGAAAAGTAACTCTTTGGCCACCATTGAGTAACA
                      ____________________________________________________________
consensus             GGAATGAAAAATATCCATCAGGTCTCAGAAAAGTAACTCTTTGGCCACCATTGAGTAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034E24-          CCTTGACGTCTG                                                
JMSF004P09+                                                                     TT
JMSF034E24+           CCTTGACGTCTGAAGCCTTAGCCAGCAGACCAGATCCTTTCAAGTTAAAGCCTGGTAATT
                      ____________________________________________________________
consensus             CCTTGACGTCTGAAGCCTTAGCCAGCAGACCAGATCCTTTCAAGTTAAAGCCTGGTAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004P09+           TCACACGTCCGTTTATAGTATACCCATCGCTGTTCCCGGAAGCAACGGCGAGAGACCAGA
JMSF034E24+           TCACACGTCCGTTTATAGTATACCCATCGCTGTTCCCGGAAGCAACGGCGAGAGACCAGA
                      ____________________________________________________________
consensus             TCACACGTCCGTTTATAGTATACCCATCGCTGTTCCCGGAAGCAACGGCGAGAGACCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004P09+           AGCAGAGTTGGAGAAGAAAGAGTAGTGGGAAAAAGATCGGCCAAGTCATAGCGATTTGCT
JMSF034E24+           AGCAGAGTTGGAGAAGAAAGAGTAGTGGGAAAAAGATCGGCCAAGTCATAGCGATTTGCT
                      ____________________________________________________________
consensus             AGCAGAGTTGGAGAAGAAAGAGTAGTGGGAAAAAGATCGGCCAAGTCATAGCGATTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004P09+           ATTGTGAGTATAGATTACAACGAAAGAAACTGAAAAAGCGATTTGAAAATCCGATCAAAA
JMSF034E24+           ATTGTGAGTATAGATTACAACGAAAGAAACTGAAAAAGCGATTTGAAAATCCGATCAAAA
                      ____________________________________________________________
consensus             ATTGTGAGTATAGATTACAACGAAAGAAACTGAAAAAGCGATTTGAAAATCCGATCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004P09+           CGAGGGAAGGAATTTCTCCTCGCGAGGGAGTCGGCACTGGTATGGCGTC           
JMSF034E24+           CGAGGGAAGGAATTTCTCCTCGCGAGGGAGTCGGCACTGGTATGGCGTCGGAAACCCACC
                      ____________________________________________________________
consensus             CGAGGGAAGGAATTTCTCCTCGCGAGGGAGTCGGCACTGGTATGGCGTCGGAAACCCACC