Contig 003762:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS010D08Sequence639003762 (4)emb|CDP09904.1|1e-94unnamed protein product [Coffea canephora]
JMSF009E05Sequence400003762 (4)emb|CDP09904.1|7e-35unnamed protein product [Coffea canephora]703003400 (6)ref|XP_003635538.1|1e-130PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera]
JMSF033O08Sequence625003762 (4)emb|CDP09904.1|6e-72unnamed protein product [Coffea canephora]712003400 (6)ref|XP_003635538.1|3e-131PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera]
JMSF041D05Sequence818003762 (4)emb|CDP09904.1|3e-120unnamed protein product [Coffea canephora]734003400 (6)ref|XP_003635538.1|1e-144PREDICTED: elongation factor G-2, chloroplastic-like, partial [Vitis vinifera]

Alignment

This contig is upended


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JMSF041D05+                                 TACAAGCGGTTTTTGCACCCAAATTCGTTACAATCATG
                      ____________________________________________________________
consensus                                   TACAAGCGGTTTTTGCACCCAAATTCGTTACAATCATG
 
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JMSF041D05+           TCTCTGGTTCGGAAGAAATTTGCTCCAAGGCGATCCATTTTGTTAACAAAGCATATCCTA
                      ____________________________________________________________
consensus             TCTCTGGTTCGGAAGAAATTTGCTCCAAGGCGATCCATTTTGTTAACAAAGCATATCCTA
 
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JMFS010D08+            GGACTCCATACTANTCCGCTTGTCTCCAAACAGTTTCTGATTGAGGTTCTACACCCGCA
JMSF041D05+           GGGACTCCATACTTATCCGCTTGTCTCCAAACAGTTTCTGATTGAGGTTCTACACCCGCA
                      ____________________________________________________________
consensus             GGGACTCCATACTTATCCGCTTGTCTCCAAACAGTTTCTGATTGAGGTTCTACACCCGCA
 
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JMFS010D08+           ACACTGTCAAACAAGCATATAGCACCGTCCAAAACTCTGAGCGCCCGTTCTACTTCAAGC
JMSF041D05+           ACACTGTCAAACAAGCATATAGCACCGTCCAAAACTCTGAGCGCCCGTTCTACTTCAAGC
JMSF033O08+                                              TCTGAGCGCCCGTTCTACTTCAAGC
                      ____________________________________________________________
consensus             ACACTGTCAAACAAGCATATAGCACCGTCCAAAACTCTGAGCGCCCGTTCTACTTCAAGC
 
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JMFS010D08+           GTGAAGTCAACATGGCCGGGAGTATCGATTATGTTAATCCGGTGCTTGTTCCAGAAAGTG
JMSF041D05+           GTGAAGTCAACATGGCCGGGAGTATCGATTATGTTAATCCGGTGCTTGTTCCAGAAAGTG
JMSF033O08+           GTGAAGTCAACATGGCCGGGAGTATCGATTATGTTAATCCGGTGCTTGTTCCAGAAAGTG
                      ____________________________________________________________
consensus             GTGAAGTCAACATGGCCGGGAGTATCGATTATGTTAATCCGGTGCTTGTTCCAGAAAGTG
 
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JMFS010D08+           GTGGTCGCAGCAGAAGTAATGGTAATCCCTCTCTCTTGCTCCTGTTCCATCCAGTCCATC
JMSF041D05+           GTGGTCGCAGCAGAAGTAATGGTAATCCCTCTCTCTTGCTCCTGTTCCATCCAGTCCATC
JMSF033O08+           GTGGTCGCAGCAGAAGTAATGGTAATCCCTCTCTCTTGCTCCTGTTCCATCCAGTCCATC
                      ____________________________________________________________
consensus             GTGGTCGCAGCAGAAGTAATGGTAATCCCTCTCTCTTGCTCCTGTTCCATCCAGTCCATC
 
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JMFS010D08+           GTTGCTGTCCCCTCGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
JMSF041D05+           GTTGCTGTCCCCTCGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
JMSF009E05+                        CGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
JMSF033O08+           GTTGCTGTCCCCTCGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
                      ____________________________________________________________
consensus             GTTGCTGTCCCCTCGTGCACCTCGCCAATCTTGTAGTTTCTACCGGTGTAGTAAAGGATC
 
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JMFS010D08+           CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
JMSF041D05+           CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
JMSF009E05+           CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
JMSF033O08+           CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
                      ____________________________________________________________
consensus             CTTTCGGTCGTTGTCGTCTTCCCTGCATCAATATGAGCCATAATCCCAATGTTGCGATAG
 
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JMFS010D08+           TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
JMSF041D05+           TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
JMSF009E05+           TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
JMSF033O08+           TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
                      ____________________________________________________________
consensus             TCCTTCAATGGCACCGTTCTCTTTTCCTCATCAGCCGCCATGGCGAAGACGGAGAAACCA
 
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JMFS010D08+           TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
JMSF041D05+           TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
JMSF009E05+           TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
JMSF033O08+           TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
                      ____________________________________________________________
consensus             TTCTTTCTGCTGTGTTTACCCAAAGTCAGATTCCTTGGAGCAGCGGCGGAGCTGAGGCGG
 
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JMFS010D08+           ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
JMSF041D05+           ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
JMSF009E05+           ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
JMSF033O08+           ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
                      ____________________________________________________________
consensus             ACGCTTCCGAAGAATTCAGAGGCGAGCGGCTGCCCTCGGGCGGCGGAGCAGCGGCGGCGC
 
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JMFS010D08+           TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
JMSF041D05+           TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
JMSF009E05+           TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
JMSF033O08+           TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
                      ____________________________________________________________
consensus             TGGTGCTGGGAAGGAATGGGAGCTCTTGAGCGACGGAAGCTGCAGAGCGAAGAAGCAGTC
 
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JMFS010D08+           GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCA                    
JMSF041D05+           GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCATCTCTCTCCCTCTCTCTCTA
JMSF009E05+           GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCATCTCTCTCCC          
JMSF033O08+           GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCATCTCTCTCCCTCTCTCTCTA
                      ____________________________________________________________
consensus             GAAGACGACGACGACATTCTTATCACCAATTCTGCCGCCATCTCTCTCCCTCTCTCTCTA
 
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JMSF041D05+           TTCTCTCTCGCAGCGGCTTGTATATATATATATGTCTATCCTACTTCTACTACTGGC   
JMSF033O08+           TTCTCTCTCGCAGCGGCTTGTATATATATATATGTCTATCCTACTTCTACTACTGGCTGC
                      ____________________________________________________________
consensus             TTCTCTCTCGCAGCGGCTTGTATATATATATATGTCTATCCTACTTCTACTACTGGCTGC