Contig 003761:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS023H09Sequence554003761 (3)gb|ABK35296.1|8e-42actin-binding protein ABP29 [Lilium longiflorum]
JMSF033M22Sequence328003761 (3)663004861 (5)emb|CAE17317.1|9e-21villin 2 [Nicotiana tabacum]
JMSF045B19Sequence702003761 (3)gb|KCW48016.1|8e-77hypothetical protein EUGRSUZ_K017494, partial [Eucalyptus grandis] gb|KCW48017.1701004861 (5)emb|CDP14114.1|1e-29unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF045B19+                                                TTCTTAAATCCAGTTGCAACACC
                      ____________________________________________________________
consensus                                                  TTCTTAAATCCAGTTGCAACACC
 
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JMSF045B19+           ACCTTCCAACGGTATAATACATGGCTTAAAGTAGGACAAGAATTTATCAGACTCATGACC
                      ____________________________________________________________
consensus             ACCTTCCAACGGTATAATACATGGCTTAAAGTAGGACAAGAATTTATCAGACTCATGACC
 
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JMSF045B19+           TTGTATTTCTCTGTGTTGTACTGCTCGCCCTCCAAGAGTTGCATCAAGCTCTACAGTTTT
                      ____________________________________________________________
consensus             TTGTATTTCTCTGTGTTGTACTGCTCGCCCTCCAAGAGTTGCATCAAGCTCTACAGTTTT
 
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JMFS023H09+               GCAGCAGTTCCCGCTTCATCCTGGCTAGTATCCTTTCCAATCCAAAAGTGTATGTC
JMSF045B19+           GATAGCAGCAGTTCCCGCTTCATCCTGGCTAGTATCCTTTCCAATCCAAAAGTGTATGTC
                      ____________________________________________________________
consensus             GATAGCAGCAGTTCCCGCTTCATCCTGGCTAGTATCCTTTCCAATCCAAAAGTGTATGTC
 
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JMFS023H09+           ATACAAATAAGCACCTCCTTTACCAGCAGTTATCTGCAAGACGATGTAAGAATCACCCGA
JMSF045B19+           ATACAAATAAGCACCTCCTTTACCAGCAGTTATCTGCAAGACGATGTAAGAATCACCCGA
                      ____________________________________________________________
consensus             ATACAAATAAGCACCTCCTTTACCAGCAGTTATCTGCAAGACGATGTAAGAATCACCCGA
 
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JMFS023H09+           GTAGAATTTACCATGATCAGATTTTGGCAAAGGAACTGGTTGAAAATTCTCAATTCTCCA
JMSF045B19+           GTAGAATTTACCATGATCAGATTTTGGCAAAGGAACTGGTTGAAAATTCTCAATTCTCCA
                      ____________________________________________________________
consensus             GTAGAATTTACCATGATCAGATTTTGGCAAAGGAACTGGTTGAAAATTCTCAATTCTCCA
 
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JMFS023H09+           GATCTCAGTCCCTGCTTTTTGTCCTGCTCCTTGAAATGCAGGTTCCAAACCTTTCACAGA
JMSF045B19+           GATCTCAGTCCCTGCTTTTTGTCCTGCTCCTTGAAATGCAGGTTCCAAACCTTTCACAGA
                      ____________________________________________________________
consensus             GATCTCAGTCCCTGCTTTTTGTCCTGCTCCTTGAAATGCAGGTTCCAAACCTTTCACAGA
 
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JMFS023H09+           GCCAGACATTGTGTACAATAATTAAAGTGCCTTCAAGAAAGGATAGTTAGACCTTCAAAG
JMSF045B19+           GCCAGACATTGTGTACAATAATTAAAGTGCCTTCAAGAAAGGATAGTTAGACCTTCAAAG
                      ____________________________________________________________
consensus             GCCAGACATTGTGTACAATAATTAAAGTGCCTTCAAGAAAGGATAGTTAGACCTTCAAAG
 
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JMFS023H09+           CTCCTAACTTCAGCTATCAAAAAAGTTCCACAAAATGAACTTCTGAGATCTCCGCGTCCC
JMSF045B19+           CTCCTAACTTCAGCTATCAAAAAAGTTCCACAAAATGAACTTCTGAGATCTCCGCGTCCC
                      ____________________________________________________________
consensus             CTCCTAACTTCAGCTATCAAAAAAGTTCCACAAAATGAACTTCTGAGATCTCCGCGTCCC
 
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JMFS023H09+           TCCAGAAGATTAGCTGATGTTCAAAATTGTGGTTTTAGACATGGAAAATAAGGGAGAGAG
JMSF045B19+           TCCAGAAGATTAGCTGATGTTCAAAATTGTGGTTTTAGACATGGAAAATAAGGGAGAGAG
JMSF033M22+                                                GACACGGAAAATANGGGAGAGAG
                      ____________________________________________________________
consensus             TCCAGAAGATTAGCTGATGTTCAAAATTGTGGTTTTAGACATGGAAAATAAGGGAGAGAG
 
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JMFS023H09+           TTTGACAGAGCTGACAAATTAAGAATAAAAATGAATAATGAATAATTGAAAATATGGCAA
JMSF045B19+           TTTGACAGAGCTGACAAATTAAGAATAAAAATGAATAATGAATAATTGAAAATATGGCAA
JMSF033M22+           TNTGTCAGAGCNGACANATTNTGANTAAAAANGNATAATGANTANTTGANAATATGGCAN
                      ____________________________________________________________
consensus             TTTGACAGAGCTGACAAATTAAGAATAAAAATGAATAATGAATAATTGAAAATATGGCAA
 
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JMFS023H09+           AATTTCTCTCTCTTGAAACCTTTACGAGATTTGAATGCGCAGAAGTTCTGGTATTCCTTT
JMSF045B19+           AATTTCTCTCTCTTGAAACCTTTACGAGATTTGAATGCGCAGAAGTTCTGGTATTCCTTT
JMSF033M22+           AATTTCTCTCTCTNGAAACCNNTACGAGATNTGAATGCGCNNAAGTTCTGGTATTCCTNN
                      ____________________________________________________________
consensus             AATTTCTCTCTCTTGAAACCTTTACGAGATTTGAATGCGCAGAAGTTCTGGTATTCCTTT
 
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JMFS023H09+           GCCGGGCAGAGAGT                                              
JMSF045B19+           GCCGGGCAGAGAGT                                              
JMSF033M22+           GCCGGGCAGAGAGTNTATGCGANAATGGAAAGAGANGANGATATATATATTNTANGTAGG
                      ____________________________________________________________
consensus             GCCGGGCAGAGAGTNTATGCGANAATGGAAAGAGANGANGATATATATATTNTANGTAGG
 
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JMSF033M22+           TNTATATATATATATATATATATACGCAAACAGGTATATAGCTCCAGTCGGATAGAAAAT
                      ____________________________________________________________
consensus             TNTATATATATATATATATATATACGCAAACAGGTATATAGCTCCAGTCGGATAGAAAAT
 
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JMSF033M22+           GGTGATGAAGGTGAGAGAGAAAACACTGCATATGTTTTTTCTAATTGTCTAGCGAGGATC
                      ____________________________________________________________
consensus             GGTGATGAAGGTGAGAGAGAAAACACTGCATATGTTTTTTCTAATTGTCTAGCGAGGATC