Contig 003754:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN020A14Sequence605003754 (3)gb|ADO66668.1|6e-122X intrinsic protein [Ipomoea nil]
JMSF032O12Sequence637003754 (3)gb|ADO66668.1|1e-123X intrinsic protein [Ipomoea nil]713003754 (3)gb|ADO66668.1|2e-137X intrinsic protein [Ipomoea nil]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-                                                             AATACATTA
                      ____________________________________________________________
consensus                                                                AATACATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          ATTTACTTTCGGGAAAGCCGGAACTTATAAGTTATAACCCCAACATATGGATTATGTTGA
                      ____________________________________________________________
consensus             ATTTACTTTCGGGAAAGCCGGAACTTATAAGTTATAACCCCAACATATGGATTATGTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          ATTGGAGGAAGTACAATAGATACATATAGTATAGTGTATAGCTATAGTTGGGGGGATCCG
                      ____________________________________________________________
consensus             ATTGGAGGAAGTACAATAGATACATATAGTATAGTGTATAGCTATAGTTGGGGGGATCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          CAGGCAAGCTTGAGAGTGGAGAAGAAATCATGTGGATAGCCGCTTGCATGGAAATGCTGA
                      ____________________________________________________________
consensus             CAGGCAAGCTTGAGAGTGGAGAAGAAATCATGTGGATAGCCGCTTGCATGGAAATGCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          GTTGGAATGATCTTAGTGTACAAATAGAATGCCACGCAAGCAATGAAAGGCCCCACCCAG
                      ____________________________________________________________
consensus             GTTGGAATGATCTTAGTGTACAAATAGAATGCCACGCAAGCAATGAAAGGCCCCACCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          AATATCCAATGACCATCCCACAGGTGTCCTCCTCTCACAACTGCGGCCCCGAAACACCTC
                      ____________________________________________________________
consensus             AATATCCAATGACCATCCCACAGGTGTCCTCCTCTCACAACTGCGGCCCCGAAACACCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          GCCGGATTCATCCCGGCGCCGGCGTATCCCTTCTTGGCCGTCACCGTCGTCGAGATGAAC
                      ____________________________________________________________
consensus             GCCGGATTCATCCCGGCGCCGGCGTATCCCTTCTTGGCCGTCACCGTCGTCGAGATGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          ACCAGCAGGCCCAACACCATTCCGACGATTGACAAAACCTTTACAAGCCCCAGCGACTTG
                      ____________________________________________________________
consensus             ACCAGCAGGCCCAACACCATTCCGACGATTGACAAAACCTTTACAAGCCCCAGCGACTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          GCCTGCCGGTGATCATACGCCATCCAAATGGACGCGAAAAGGAAGACGAATGAACAGAAG
                      ____________________________________________________________
consensus             GCCTGCCGGTGATCATACGCCATCCAAATGGACGCGAAAAGGAAGACGAATGAACAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          ATCTCGAGCCAGAAAGCCTGGGCCGTCTCGAGCCCAACAGTAATGGGCCCATTTGGGCCC
JMFN020A14+                                           CCCAACAGTAATGGGCCCATTTGGGCCC
JMSF032O12+                                  CGTCTCGAGCCCAACAGTAATGGGCCCATTTGGGCCC
                      ____________________________________________________________
consensus             ATCTCGAGCCAGAAAGCCTGGGCCGTCTCGAGCCCAACAGTAATGGGCCCATTTGGGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          GGAGCAATCACCGTCAGCGTGCATCCTCCCAACGAGAAAGTGTTTTCGATACTGCTACTC
JMFN020A14+           GGAGCAATCACCGTCAGCGTGCATCCTCCCAACGAGAAAGTGTTTTCGATACTGCTACTC
JMSF032O12+           GGAGCAATCACCGTCAGCGTGCATCCTCCCAACGAGAAAGTGTTTTCGATACTGCTACTC
                      ____________________________________________________________
consensus             GGAGCAATCACCGTCAGCGTGCATCCTCCCAACGAGAAAGTGTTTTCGATACTGCTACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          ACCACCGCCTTGAGCGCCAGCGCACCCAGCGTAGCACCGACGCACTGTGCAACCATGTAG
JMFN020A14+           ACCACCGCCTTGAGCGCCAGCGCACCCAGCGTAGCACCGACGCACTGTGCAACCATGTAG
JMSF032O12+           ACCACCGCCTTGAGCGCCAGCGCACCCAGCGTAGCACCGACGCACTGTGCAACCATGTAG
                      ____________________________________________________________
consensus             ACCACCGCCTTGAGCGCCAGCGCACCCAGCGTAGCACCGACGCACTGTGCAACCATGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032O12-          ATTACAGCTCTGGAAATGGAAATAATCCCGACTAAGGCGGCGGA                
JMFN020A14+           ATTACAGCTCTGGAAATGGAAATAATCCCGACTAAGGCGGCGGAGAAGGAGATAATGGGG
JMSF032O12+           ATTACAGCTCTGGAAATGGAAATAATCCCGACTAAGGCGGCGGAGAAGGAGATAATGGGG
                      ____________________________________________________________
consensus             ATTACAGCTCTGGAAATGGAAATAATCCCGACTAAGGCGGCGGAGAAGGAGATAATGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020A14+           TTTATGTGGCCACCGGAGACCGGAAACACTGCGATTAGCAGAATAGTGATGACGATAGCG
JMSF032O12+           TTTATGTGGCCACCGGAGACCGGAAACACTGCGATTAGCAGAATAGTGATGACGATAGCG
                      ____________________________________________________________
consensus             TTTATGTGGCCACCGGAGACCGGAAACACTGCGATTAGCAGAATAGTGATGACGATAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020A14+           ATAAGAACCGACATAACTAAATTTGGCATTTTGATGTCAGTTTCGTAGGTGGATATGACT
JMSF032O12+           ATAAGAACCGACATAACTAAATTTGGCATTTTGATGTCAGTTTCGTAGGTGGATATGACT
                      ____________________________________________________________
consensus             ATAAGAACCGACATAACTAAATTTGGCATTTTGATGTCAGTTTCGTAGGTGGATATGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020A14+           ATGGCGTCAATCATGAAGACCAGCACGGCCGTGCCGATGAGCTCCCCTATCGATGCCCGC
JMSF032O12+           ATGGCGTCAATCATGAAGACCAGCACGGCCGTGCCGATGAGCTCCCCTATCGATGCCCGC
                      ____________________________________________________________
consensus             ATGGCGTCAATCATGAAGACCAGCACGGCCGTGCCGATGAGCTCCCCTATCGATGCCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020A14+           CAGACATTCAATGAAAAGAAGTCCATGACGCCCAGTTTCTGAGCAAGCGTGACGGAAGCC
JMSF032O12+           CAGACATTCAATGAAAAGAAGTCCATGACGCCCAGTTTCTGAGCAAGCGTAACGGAAGCC
                      ____________________________________________________________
consensus             CAGACATTCAATGAAAAGAAGTCCATGACGCCCAGTTTCTGAGCAAGCGTGACGGAAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020A14+           GGAGGCGTTTTCTGATCATCGCCAGTCCACTCGTGATCCCCCATTGGGAATGGAGAGAAG
JMSF032O12+           GGAGGCGTTTTCTGATCATCGCCAGTCCACTCGTGATCCCCCATTGGGAATGGAGAGAAG
                      ____________________________________________________________
consensus             GGAGGCGTTTTCTGATCATCGCCAGTCCACTCGTGATCCCCCATTGGGAATGGAGAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020A14+           ACGGCTGCAATTCTTTTGCTTCCACCAATATTGTGAGGATGGCTTTCTTCATCGCCAAGA
JMSF032O12+           ACGGCTGCAATTCTTTTGCTTCCACCAATATTGTGAGGATGGCTTTCTTCATCGCCAAGA
                      ____________________________________________________________
consensus             ACGGCTGCAATTCTTTTGCTTCCACCAATATTGTGAGGATGGCTTTCTTCATCGCCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020A14+           ATGTGCCTTGGAATTGTGTTGGCAGCCATTGATGGAT                       
JMSF032O12+           ATGTGCCTTGGAATTGTGTTGGCAGCCATTGATGGATAAATGATGTTAGTTAGTTGTACC
                      ____________________________________________________________
consensus             ATGTGCCTTGGAATTGTGTTGGCAGCCATTGATGGATAAATGATGTTAGTTAGTTGTACC