Contig 003748:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024P14Sequence514003748 (5)ref|XP_006343540.1|2e-40PREDICTED: pathogenesis-related protein PR-1-like [Solanum tuberosum]601003748 (5)ref|XP_009606837.1|2e-95PREDICTED: pathogenesis-related protein PR-1 [Nicotiana tomentosiformis]
JMFN029M20Sequence577003748 (5)ref|XP_009606837.1|1e-78PREDICTED: pathogenesis-related protein PR-1 [Nicotiana tomentosiformis]
JMSF032F24Sequence605003748 (5)ref|XP_009606837.1|2e-79PREDICTED: pathogenesis-related protein PR-1 [Nicotiana tomentosiformis]580003748 (5)ref|XP_009606837.1|8e-96PREDICTED: pathogenesis-related protein PR-1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF032F24-                                                                   CAG
rJMFF024P14-                                               ATACCATCATTTATGATATACAG
                      ____________________________________________________________
consensus                                                  ATACCATCATTTATGATATACAG
 
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rJMSF032F24-          AAATGTAAGGAATATGATTCACATGTACATATATATGTGAGATAAATATATATATAACAC
rJMFF024P14-          AAATGTAAGGAATATGATTCACATGTACATATATATGTGAGATAAATATATATATAACAC
                      ____________________________________________________________
consensus             AAATGTAAGGAATATGATTCACATGTACATATATATGTGAGATAAATATATATATAACAC
 
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rJMSF032F24-          TAATATGGCTTCTCACCAATATAATTCCCAGGTGGGTAGTAATTACATGTCATGAAAACA
rJMFF024P14-          TAATATGGCTTCTCACCAATATAATTCCCAGGTGGGTAGTAATTACATGTCATGAAAACA
                      ____________________________________________________________
consensus             TAATATGGCTTCTCACCAATATAATTCCCAGGTGGGTAGTAATTACATGTCATGAAAACA
 
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rJMSF032F24-          TCACCATCATCACAAACAACCCTAGCACACCCAACTCTCATACTCTTTCTCCACACAATC
rJMFF024P14-          TCACCATCATCACAAACAACCCTAGCACACCCAACTCTCACACTCTTTCTCCACACAATC
JMFN029M20+               CATCATCACAAACAACCCTAGCACACCCAACTCTCACACTCTTTCTCCACACAATC
JMSF032F24+              CCATCATCACAAACAACCCTAGCACACCCAACTCTCATACTCTTTCTCCACACAATC
                      ____________________________________________________________
consensus             TCACCATCATCACAAACAACCCTAGCACACCCAACTCTCATACTCTTTCTCCACACAATC
 
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rJMSF032F24-          TGAGTGTAATGCCCACAAACCTGCCCTTCAGCACAGCTATTTGCATCATAGTTATAATAC
rJMFF024P14-          TGAGTGTAATGCCCACAAACCTGCCCTTCAGCACAGCTATTTGCATCATAGTTATAATAC
JMFN029M20+           TGAGTGTAATGCCCACAAACCTGCCCTTCAGCACAGCTATTTGCATCATAGTTATAATAC
JMFF024P14+                                    CTTCAGCACAGCTATTTGCATCATAGTTATAATAC
JMSF032F24+           TGAGTGTAATGCCCACAAACCTGCCCTTCAGCACAGCTATTTGCATCATAGTTATAATAC
                      ____________________________________________________________
consensus             TGAGTGTAATGCCCACAAACCTGCCCTTCAGCACAGCTATTTGCATCATAGTTATAATAC
 
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rJMSF032F24-          TTCTGTTCATCAGCCCAGGCCTTGACTGCATCGCCAGGGGTCCAAGTGGAGCCACTCCCC
rJMFF024P14-          TTCTGTTCATCAGCCCAGGCCTTGACTGCATCGCCAGGGGTCCAAGTGGAGCCACTCCCC
JMFN029M20+           TTCTGTTCATCAGCCCAGGCCTTGACTGCATCGCCAGGGGTCCAAGTGGAGCCACTCCCC
JMFF024P14+           TTCTGTTCATCAGCCCAGGCCTTGACTGCATCGCCAGGGGTCCAAGTGGAGCCACTCCCC
JMSF032F24+           TTCTGTTCATCAGCCCAGGCCTTGACTGCATCGCCAGGGGTCCAAGTGGAGCCACTCCCC
                      ____________________________________________________________
consensus             TTCTGTTCATCAGCCCAGGCCTTGACTGCATCGCCAGGGGTCCAAGTGGAGCCACTCCCC
 
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rJMSF032F24-          CAATATATGTTCTCTCCCAGCTTGAAATCCCCTTCTGGGAAGGAGTGCATGGGGCGGCAG
rJMFF024P14-          CAATATATGTTCTCTCCCAGCTTGAAATCCCCTTCTGGGAAGGAGTGCATGGGGCGGCAG
JMFN029M20+           CAATATATGTTCTCTCCCAGCTTGAAATCCCCTTCTGGGAAGGAGTGCATGGGGCGGCAG
JMFF024P14+           CAATATATGTTCTCTCCCAGCTTGAAATCCCCTTCTGGGAAGGAGTGCATGGGGCGGCAG
JMSF032F24+           CAATATATGTTCTCTCCCAGCTTGAAATCCCCTTCTGGGAAGGAGTGCATGGGGCGGCAG
                      ____________________________________________________________
consensus             CAATATATGTTCTCTCCCAGCTTGAAATCCCCTTCTGGGAAGGAGTGCATGGGGCGGCAG
 
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rJMSF032F24-          TCTGCCTTTCTCTGGGCCGCCCACCACGT-GGCGTAGGCCTCCAGCTGCGGGTCCCACGC
rJMFF024P14-          TCTGCCTTTCTCTGGGCCGCCCACCACGT-GGCGTAGGCCTCCAGCTGCGGGTCCCACGC
JMFN029M20+           TCTGCCTTTCTCTGGGCCGCCCACCACGT-GGCGTAGGCCTCCAGCTGCGGGTCCCACGC
JMFF024P14+           TCTGCCTTTCTCTGGGCCGCCCACCACGTGGGCGTAGGCCTCCAGCTGCGGGTCCCACGC
JMSF032F24+           TCTGCCTTTCTCTGGGCCGCCCACCACGT-GGCGTAGGCCTCCAGCTGCGGGTCCCACGC
                      ____________________________________________________________
consensus             TCTGCCTTTCTCTGGGCCGCCCACCACGT-GGCGTAGGCCTCCAGCTGCGGGTCCCACGC
 
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rJMSF032F24-          GAGTGGGGGCTCCCACTTGGATGCCCTGACTAGGTTGTGTCGGAACAGGAACTGCAGGGC
rJMFF024P14-          GAGTGGGGGCTCCCACTTGGATGCCCTGACTAGGTTGTGTCGGAACAGGAACTGCAGGGC
JMFN029M20+           GAGTGGGGGCTCCCACTTGGATGCCCTGACTAGGTTGTGTCGGAACAGGAACTGCAGGGC
JMFF024P14+           GAGTGGGGGCTCCCACTTGGATGCCCTGACTAGGTTGTGTCGGAACAGGAACTGCAGGGC
JMSF032F24+           GAGTGGGGGCTCCCACTTGGATGCCCTGACTAGGTTGTGTCGGAACAGGAACTGCAGGGC
                      ____________________________________________________________
consensus             GAGTGGGGGCTCCCACTTGGATGCCCTGACTAGGTTGTGTCGGAACAGGAACTGCAGGGC
 
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rJMSF032F24-          CTCTCCTAGGCAGTTCCAGCATAGCTGTTTGGAGATCCTGTAGATTGTGTCGTTGCTTAG
rJMFF024P14-          CTCTCCTAGGCAGTTCCAGCATAGCTGTTTGGAGATCCTGTAGATTGTGTCGTTGCTTAG
JMFN029M20+           CTCTCCTAGGCAGTTCCAGCATAGCTGTTTGGAGATCCTGTAGATTGTGTCGTTGCTTAG
JMFF024P14+           CTCTCCTAGGCAGTTCCAGCATAGCTGTTTGGAGATCCTGTAGATTGTGTCGTTGCTTAG
JMSF032F24+           CTCTCCTAGGCAGTTCCAGCATAGCTGTTTGGAGATCCTGTAGATTGTGTCGTTGCTTAG
                      ____________________________________________________________
consensus             CTCTCCTAGGCAGTTCCAGCATAGCTGTTTGGAGATCCTGTAGATTGTGTCGTTGCTTAG
 
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rJMSF032F24-          GTTTTTCATGGGGGCTGGTGATGATGATGATGAGGAGG                      
rJMFF024P14-          GTTTTTCATGGGGGCTGGTGATGATGATGATGAGGAGGA                     
JMFN029M20+           GTTTTTCATGGGGGCTGGTGATGATGATGATGAGGAGGAGGAGGAGGAGGGTGGAGATGC
JMFF024P14+           GTTTTTCATGGGGGCTGGTGATGATGATGATGAGGAGGAGGAGGAGGAGGGTGGAGATGC
JMSF032F24+           GTTTTTCATGGGGGCTGGTGATGATGATGATGAGGAGGAGGAGGAGGAGGGTGGAGATGC
                      ____________________________________________________________
consensus             GTTTTTCATGGGGGCTGGTGATGATGATGATGAGGAGGAGGAGGAGGAGGGTGGAGATGC
 
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JMFN029M20+           CGTGGTGAGGGTGATGGTGATGAAGAGAATGAGAAGAGGGAGAAAATAATGGAGGCTTTT
JMFF024P14+           CGTGGTGAGGGTGATGGTGATGAAGAGAATGAGAAGAGGGAGAAAATAATGGAGGCTTTT
JMSF032F24+           CGTGGTGAGGGTGATGGTGATGAAGAGAATGAGAAGAGGGAGAAAATAATGGAGGCTTTT
                      ____________________________________________________________
consensus             CGTGGTGAGGGTGATGGTGATGAAGAGAATGAGAAGAGGGAGAAAATAATGGAGGCTTTT
 
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JMFN029M20+           CATGTTTGGTTTGAGGAGAAAATAAAGAGGGACAGATAGATA                  
JMFF024P14+           CATGTTTGGTTTGAGGAGAAAATAAAGAGGGACAGATAGATAATTAATTATTCTTTGG  
JMSF032F24+           CATGTTTGGTTTGAGGAGAAAATAAAGAGGGACAGATAGATAATTAATTATTCTTTGGTC
                      ____________________________________________________________
consensus             CATGTTTGGTTTGAGGAGAAAATAAAGAGGGACAGATAGATAATTAATTATTCTTTGGTC