Contig 003740:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF002F14-                                                             AGGGACATT
rJMSF031I12-                                         TGTTTGTCACAAGAGATCCAAGGGACATT
                      ____________________________________________________________
consensus                                            TGTTTGTCACAAGAGATCCAAGGGACATT
 
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rJMSF002F14-          CAAATGACACCAAAAGTTTTACAACTACATATAATTGGCAATGCAAGAACATCAAAGTTA
rJMSF031I12-          CAAATGACACCAAAAGTTTTACAACTACATATAATTGGCAATGCAAGAACATCAAAGTTA
                      ____________________________________________________________
consensus             CAAATGACACCAAAAGTTTTACAACTACATATAATTGGCAATGCAAGAACATCAAAGTTA
 
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rJMSF002F14-          CTACTTATCATGTGCAAAGAAACAGCAATACTGATTATATTTAGGAGCAAGGGGTATTGG
rJMSF031I12-          CTACTTATCATGTGCAAAGAAACAGCAATACTGATTATATTTAGGAGCAAGGGGTATTGG
                      ____________________________________________________________
consensus             CTACTTATCATGTGCAAAGAAACAGCAATACTGATTATATTTAGGAGCAAGGGGTATTGG
 
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rJMSF002F14-          ATTTGGTTTTGGGGCGAGAAAAAACATACTTTTAGGCATTGTTCCCACGAGATTGTCCAG
rJMSF031I12-          ATTTGGTTTTGGGGCGAGAAAAAACATACTTTTAGGCATTGTTCCCACGAGATTGTCCAG
                      ____________________________________________________________
consensus             ATTTGGTTTTGGGGCGAGAAAAAACATACTTTTAGGCATTGTTCCCACGAGATTGTCCAG
 
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rJMSF002F14-          GATTAAGATTGGAACCTCCACCACTCTGTTCACCCACAGCCACAGGGCTCGACTGCTGTG
rJMSF031I12-          GATTAAGATTGGAACCTCCACCACTCTGTTCACCCACAGCCACAGGGCTCGACTGCTGTG
                      ____________________________________________________________
consensus             GATTAAGATTGGAACCTCCACCACTCTGTTCACCCACAGCCACAGGGCTCGACTGCTGTG
 
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rJMSF002F14-          AGCTTGCTAGTTAGATGCCCGAGTATTTCCTTGCACAGGTCTATTGACCTGCATTGTTTC
rJMSF031I12-          AGCTTGCTAGTTAGATGCCCGAGTATTTCCTTGCACAGGTCTATTGACCTGCATTGTTTC
JMSF031I12+                                                                     TC
                      ____________________________________________________________
consensus             AGCTTGCTAGTTAGATGCCCGAGTATTTCCTTGCACAGGTCTATTGACCTGCATTGTTTC
 
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rJMSF002F14-          TCTACGTCTATCATATCGTGGTCGGGACCGGGGCGTATTATTTTGCCTCTCAGTGAATCT
rJMSF031I12-          TCTACGTCTATCATATCGTGGTCGGGACCGGGGCGTATTATTTTGCCTCTCAGTGAATCT
JMSF031I12+           TCTACGTCTATCATATCGTGGTCGGGACCGGGGCGTATTATTTTGCCTCTCAGTGAATCT
                      ____________________________________________________________
consensus             TCTACGTCTATCATATCGTGGTCGGGACCGGGGCGTATTATTTTGCCTCTCAGTGAATCT
 
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rJMSF002F14-          GTATTGTGGCCGATGGGTGACTTTCCCATTTTCGTACAAATCCCCTCCATAGTCCTTATT
rJMSF031I12-          GTATTGTGGCCGATGGGTGACTTTCCCATTTTCGTACAAATCCCCTCCATAGTCCTTATT
JMSF031I12+           GTATTGTGGCCGATGGGTGACTTTCCCATTTTCGTACAAATCCCCTCCATAGTCCTTATT
                      ____________________________________________________________
consensus             GTATTGTGGCCGATGGGTGACTTTCCCATTTTCGTACAAATCCCCTCCATAGTCCTTATT
 
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rJMSF002F14-          AGGAACATCAAGATATGAATCTGGCAAGACCCATAAGACACCAGGTAGACCTTTTACTTT
rJMSF031I12-          AGGAACATCAAGATATGAATCTGGCAAGACCCATAAGACACCAGGTAGACCTTTTACTTT
JMSF031I12+           AGGAACATCAAGATATGAATCTGGCAAGACCCATAAGACACCAGGTAGACCTTTTACTTT
                      ____________________________________________________________
consensus             AGGAACATCAAGATATGAATCTGGCAAGACCCATAAGACACCAGGTAGACCTTTTACTTT
 
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rJMSF002F14-          GTAGGAAAGCTCTTCAGAAATCAAAGCACCAAAGCCAGTATATGTGGTCGTACAGACAGA
rJMSF031I12-          GTAGGAAAGCTCTTCAGAAATCAAAGCACCAAAGCCAGTATATGTGGTCGTACAGACAGA
JMSF031I12+           GTAGGAAAGCTCTTCAGAAATCAAAGCACCAAAGCCAGTATATGTGGTCGTACAGACAGA
                      ____________________________________________________________
consensus             GTAGGAAAGCTCTTCAGAAATCAAAGCACCAAAGCCAGTATATGTGGTCGTACAGACAGA
 
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rJMSF002F14-          GTAAATCTTTTTCTTAGCCTCCTCTTCACTTCCAACTACAGAAGTTAGGGTTTTGACATA
rJMSF031I12-          GTAAATCTTTTTCTTAGCCTCCTCTTCACTTCCAACTACAGAAGTTAGGGTTTTGACATA
JMSF002F14+                                  CTTCACTTCCAACTACAGAAGTTAGGGTTTTGACATA
JMSF031I12+           GTAAATCTTTTTCTTAGCCTCCTCTTCACTTCCAACTACAGAAGTTAGGGTTTTGACATA
                      ____________________________________________________________
consensus             GTAAATCTTTTTCTTAGCCTCCTCTTCACTTCCAACTACAGAAGTTAGGGTTTTGACATA
 
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rJMSF002F14-          AGCATTAATCATATCCTCCTCAGAGGGTTTCGGGTCGGGGAACTCCATGACGATGAGCCA
rJMSF031I12-          AGCATTAATCATATCCTCCTCAGAGGGTTTCGGGTCGGGGAACTCCATGACGATGAGCCA
JMSF002F14+           AGCATTAATCATATCCTCCTCAGAGGGTTTCGGGTCGGGGAACTCCATGACGATGAGCCA
JMSF031I12+           AGCATTAATCATATCCTCCTCAGAGGGTTTCGGGTCGGGGAACTCCATGACGATGAGCCA
                      ____________________________________________________________
consensus             AGCATTAATCATATCCTCCTCAGAGGGTTTCGGGTCGGGGAACTCCATGACGATGAGCCA
 
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rJMSF002F14-          ATGCTCGTAGTCGCAGCCATCGAGTAGAATTGTCTCTTT                     
rJMSF031I12-          ATGCTCGTAGTCGCAGCCATCGAGTAAAATTGTCTCTTT                     
JMSF002F14+           ATGCTCGTAGTCGCAGCCATCGAGTAGAATTGTCTCTTTGGGGGGCCGGTTGCTCCAGTT
JMSF031I12+           ATGCTCGTAGTCGCAGCCATCGAGTAGAATTGTCTCTTTGGGGGGCCGGTTGCTCCAGTT
                      ____________________________________________________________
consensus             ATGCTCGTAGTCGCAGCCATCGAGTAGAATTGTCTCTTTGGGGGGCCGGTTGCTCCAGTT
 
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JMSF002F14+           GGGCGATGGATCGTTCAGGGGTGAATAACCGGGTCCGGTTGTCTTGGCGCGGGTCTGGAC
JMSF031I12+           GGGCGATGGATCGTTCAGGGGTGAATAACCGGGTCCGGTTGTCTTGGCGCGGGTCTGGAC
                      ____________________________________________________________
consensus             GGGCGATGGATCGTTCAGGGGTGAATAACCGGGTCCGGTTGTCTTGGCGCGGGTCTGGAC
 
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JMSF002F14+           AAAATGCTGCGCCTGAAGCTGATGATGGTAGTTGAGGAGAAGAGGGACGACGACGCGTTG
JMSF031I12+           AAAATGCTGCGCCTGAAGCTGATGATGGTAGTTGAGGAGAAGAGGGACGACGACGCGTTG
                      ____________________________________________________________
consensus             AAAATGCTGCGCCTGAAGCTGATGATGGTAGTTGAGGAGAAGAGGGACGACGACGCGTTG
 
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JMSF002F14+           GCGAGAAGCGGATGACGGCGATGAGGAGAGAGCACGAGAGAGGCAGGAGGCTAACGTGCG
JMSF031I12+           GCGAGAAGCGGATGACGGCGATGAGGAGAGAGCACGAGAGAGGCAGGAGGCTAACGTGCG
                      ____________________________________________________________
consensus             GCGAGAAGCGGATGACGGCGATGAGGAGAGAGCACGAGAGAGGCAGGAGGCTAACGTGCG
 
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JMSF002F14+           CCTAGCCATAGGGTAGTCACAAATGTAATTCCTTTTTTTGAAGAGAACAAATGT      
JMSF031I12+           CCTAGCCATAGGGTAGTCACAAATGTAATTCCTTTTTTTGAAGAGAACAAATGTAATTCC
                      ____________________________________________________________
consensus             CCTAGCCATAGGGTAGTCACAAATGTAATTCCTTTTTTTGAAGAGAACAAATGTAATTCC