Contig 003736:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031A24Sequence606003736 (2)ref|XP_009594520.1|2e-42PREDICTED: sialidase isoform X2 [Nicotiana tomentosiformis]
JMSF052K07Sequence575003736 (2)ref|XP_009594520.1|3e-40PREDICTED: sialidase isoform X2 [Nicotiana tomentosiformis]895024705ref|XP_009772874.1|2e-97PREDICTED: sialidase isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF052K07+                                  TGGATGGCTGTTCTCAGACTGAGACACAGAAAGCCTT
                      ____________________________________________________________
consensus                                    TGGATGGCTGTTCTCAGACTGAGACACAGAAAGCCTT
 
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JMSF052K07+           GAGGCCTTAGCTGCAGAGANTGATCTGCCCAAAGGGCGTCCTCTTGGAGTCTGGGCAACT
                      ____________________________________________________________
consensus             GAGGCCTTAGCTGCAGAGANTGATCTGCCCAAAGGGCGTCCTCTTGGAGTCTGGGCAACT
 
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JMSF052K07+           TGTGCTGGTTGAGATTCATTTCCATTGGATGAAGGAACAAGTGGAGTGCCTGGAGGAGTT
JMSF031A24+                                       ATGAAGGAACAAGTGGAGTGCCTGGAGGAGTT
                      ____________________________________________________________
consensus             TGTGCTGGTTGAGATTCATTTCCATTGGATGAAGGAACAAGTGGAGTGCCTGGAGGAGTT
 
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JMSF052K07+           AGAAGCCAATCATAATCATGTTTTCCTTCATCAGAAGATGAGAACAGATCCTCCAATCCA
JMSF031A24+           AGAAGCCAATCATAATCATGTTTTCCTTCATCAGAAGATGAGAACAGATCCTCCAATCCA
                      ____________________________________________________________
consensus             AGAAGCCAATCATAATCATGTTTTCCTTCATCAGAAGATGAGAACAGATCCTCCAATCCA
 
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JMSF052K07+           TTCTTCCCCACCATTGCAGATCCAAGTGAAAGCCTCCCTAGTTTAACCGAAACGTCTGAC
JMSF031A24+           TTCTTCCCCACCATTGCAGATCCAAGTGAAAGCCTCCCTAGTTTAACCGAAACGTCTGAC
                      ____________________________________________________________
consensus             TTCTTCCCCACCATTGCAGATCCAAGTGAAAGCCTCCCTAGTTTAACCGAAACGTCTGAC
 
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JMSF052K07+           TCGTCGGAGGAGGCGGCGGAGACGCTGCGGCGGCCTTTGGAGAATAGATCCAATGGATCA
JMSF031A24+           TCGTCGGAGGAGGCGGCGGAGACGNTGCGGCGGCCTTTGGAGAATAGATCCAATGGATCA
                      ____________________________________________________________
consensus             TCGTCGGAGGAGGCGGCGGAGACGCTGCGGCGGCCTTTGGAGAATAGATCCAATGGATCA
 
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JMSF052K07+           TCGAAGGATTCCTTGTTGGAGGCTCCATTGAGACTAAAGCCACGGCGGTGCTGNGACGGC
JMSF031A24+           TCGAAGGATTCCTTGTTGGAGGCTCCATTGAGACTAAAGCCACGGCGGTGCTGCGACGGC
                      ____________________________________________________________
consensus             TCGAAGGATTCCTTGTTGGAGGCTCCATTGAGACTAAAGCCACGGCGGTGCTGCGACGGC
 
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JMSF052K07+           AACGGGAAATTCTTCCCGCCGCCAATCGTTGAGTTCCGGAAGCTCCGATTCATCTCTATT
JMSF031A24+           AACGGGAAATTCTCCCCGCCGCCAATCGTTGAGTTCCGGAAGCTCCGATTCATCTCTATT
                      ____________________________________________________________
consensus             AACGGGAAATTCTTCCCGCCGCCAATCGTTGAGTTCCGGAAGCTCCGATTCATCTCTATT
 
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JMSF052K07+           TATGCATCAGTATAGTTAGTCCAACATTACGACTGCGAAGAATTTCAGAGATGAAAGCTT
JMSF031A24+           TATGCATCAGTATAGTTAGTCCAACATTACGACTGCGAAGAATTTCAGAGATGAAAGCTT
                      ____________________________________________________________
consensus             TATGCATCAGTATAGTTAGTCCAACATTACGACTGCGAAGAATTTCAGAGATGAAAGCTT
 
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JMSF052K07+           TCCTTGGAGTATGCGTACTGACCGGAGTGTGCGGTAGATTGGATCTGTGAGAAGCTT   
JMSF031A24+           TCCTTGGAGTATGCGTACTGACCGGAGTGTGCGGTAGATTGGATCTGTGAGAAGCTTGCA
                      ____________________________________________________________
consensus             TCCTTGGAGTATGCGTACTGACCGGAGTGTGCGGTAGATTGGATCTGTGAGAAGCTTGCA
 
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JMSF031A24+           GGGGGAGAGAGAGATGGTAGAAGAAGAATTTCCCGAGTTAAAGGAGGCAAAAGCATGTTC
                      ____________________________________________________________
consensus             GGGGGAGAGAGAGATGGTAGAAGAAGAATTTCCCGAGTTAAAGGAGGCAAAAGCATGTTC