clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF034M22 | Sequence | 516 | 003726 (3) | ref|XP_006339835.1| | 5e-81 | PREDICTED: metal transporter Nramp3-like [Solanum tuberosum] | 590 | 002897 (3) | emb|CBI33737.3| | 8e-40 | unnamed protein product [Vitis vinifera] |
JMSF013K09 | Sequence | 502 | 003726 (3) | ref|XP_006339835.1| | 1e-69 | PREDICTED: metal transporter Nramp3-like [Solanum tuberosum] | 762 | 002897 (3) | gb|KHN12967.1| | 1e-85 | Metal transporter Nramp3 [Glycine soja] |
JMSF029L23 | Sequence | 707 | 003726 (3) | ref|XP_006339835.1| | 4e-112 | PREDICTED: metal transporter Nramp3-like [Solanum tuberosum] | 738 | 002897 (3) | ref|XP_003517323.1| | 6e-72 | PREDICTED: metal transporter Nramp3-like [Glycine max] |
This contig is upended
. : . : . : . : . : . :
JMSF029L23+ CCAATGAGTACAGCGAAAAGAGCTTCTAGTTTCCTCACTCCATAGTT
____________________________________________________________
consensus CCAATGAGTACAGCGAAAAGAGCTTCTAGTTTCCTCACTCCATAGTT
. : . : . : . : . : . :
JMSF029L23+ CTCAAGAAACAGGAATATAAAGCAATCTAGAGCAGTTATGACGACACCAGCCCAGAGAGG
____________________________________________________________
consensus CTCAAGAAACAGGAATATAAAGCAATCTAGAGCAGTTATGACGACACCAGCCCAGAGAGG
. : . : . : . : . : . :
JMFF034M22+ TGGCAATGGCACTGCCAATTACCTCTTGAATATC
JMSF029L23+ CAAGAAACCATTACTGAGAATCTTGATGGCAATGGCACTGCCAATTACCTCTTGAATATC
____________________________________________________________
consensus CAAGAAACCATTACTGAGAATCTTGATGGCAATGGCACTGCCAATTACCTCTTGAATATC
. : . : . : . : . : . :
JMFF034M22+ GGCCCCAATCAGAGCCAGCTCAGCCATAACCCACAGCAACATCCTAGCCCACTTGGGGTA
JMSF013K09+ CAATCAGAGCCAGNTCAGCCATAACCCACAGCAACATCCTAGCCCACTTGGGGTA
JMSF029L23+ GGCCCCAATCAGAGCCAGCTCAGCCATAACCCACAGCAACATCCTAGCCCACTTGGGGTA
____________________________________________________________
consensus GGCCCCAATCAGAGCCAGCTCAGCCATAACCCACAGCAACATCCTAGCCCACTTGGGGTA
. : . : . : . : . : . :
JMFF034M22+ CTCGTCCCGGCAGAGCTCAGCCAAGTGGCGGCCGGTAGCAACCCCGAGGCGGGCGGACAA
JMSF013K09+ CTCGTCCCGGCAGAGCTCAGCCAAGTGGCGGCCGGTAGCAACCCCGTGGCGGGCGGACAA
JMSF029L23+ CTCGTCCCGGCAGAGCTCAGCCAAGTGGCGGCCGGTAGCAACCCCGAGGCGGGCGGACAA
____________________________________________________________
consensus CTCGTCCCGGCAGAGCTCAGCCAAGTGGCGGCCGGTAGCAACCCCGAGGCGGGCGGACAA
. : . : . : . : . : . :
JMFF034M22+ GAGCTGGACCAGCAGACCCATAGCCGTGGCCCAGAAGAGCAGCCACAGCAGGGAATAGCC
JMSF013K09+ GAGCTGGACCAGCAGACCCATAGCCGTGGCCCAGAAGAGCAGCCACAGCAGGGAATAGCC
JMSF029L23+ GAGCTGGACCAGCAGACCCATAGCCGTGGCCCAGAAGAGCAGCCACAGCAGGGAATAGCC
____________________________________________________________
consensus GAGCTGGACCAGCAGACCCATAGCCGTGGCCCAGAAGAGCAGCCACAGCAGGGAATAGCC
. : . : . : . : . : . :
JMFF034M22+ GGCAATCGCGCCGGCCTGAAGATCGCCCTCCAAATTCCCGGGATCGAGAAAGGCTATGCT
JMSF013K09+ GGCAATCGCGCCGGCCTGAAGATCGCCCTCCAAATTCCCGGGATCGAGAAAGGCTATGCT
JMSF029L23+ GGCAATCGCGCCGGCCTGAAGATCGCCCTCCAAATTCCCGGGATCGAGAAAGGCTATGCT
____________________________________________________________
consensus GGCAATCGCGCCGGCCTGAAGATCGCCCTCCAAATTCCCGGGATCGAGAAAGGCTATGCT
. : . : . : . : . : . :
JMFF034M22+ CATCAGGAACCCCGGGCCGGTGAAGAGCCAGAGCTTCTTCCATGAAAAAGGCGGCGTCTT
JMSF013K09+ CATCAGGAACCCCGGGCCGGTGAAGAGCCAGAGCTTCTTCCATGAAAAAGGCGGCGTCTT
JMSF029L23+ CATCAGGAACCCCGGGCCGGTGAAGAGCCAGAGCTTCTTCCATGAAAAAGGCGGCGTCTT
____________________________________________________________
consensus CATCAGGAACCCCGGGCCGGTGAAGAGCCAGAGCTTCTTCCATGAAAAAGGCGGCGTCTT
. : . : . : . : . : . :
JMFF034M22+ TGTGCTGTCCTCCTCGGTTTCGGCTTCGTCAAGTCCGATGATGTGGACTTTCTCGGTGCG
JMSF013K09+ TGTGCTGTCCTCCTCGGTTTCGGCTTCGTCAAGTCCGATGATGTGGACTTTCTCGGTGCG
JMSF029L23+ TGTGCTGTCCTCCTCGGTTTCGGCTTCGTCAAGTCCGATGATGTGGACTTTCTCGGTGCG
____________________________________________________________
consensus TGTGCTGTCCTCCTCGGTTTCGGCTTCGTCAAGTCCGATGATGTGGACTTTCTCGGTGCG
. : . : . : . : . : . :
JMFF034M22+ CTCATAGGCGCTATCTTCCTCGTCCGGATTCAGTAACGGCTGCTCGCTTCGGTTCTCTTC
JMSF013K09+ CTCATAGGCGCTATCTTCCTCGTCCGGATTCAGTAACGGCTGCTCGCTTCGGTTCTCTTC
JMSF029L23+ CTCATAGGCGCTATCTTCCTCGTCCGGATTCAGTAACGGCTGCTCGCTTCGGTTCTCTTC
____________________________________________________________
consensus CTCATAGGCGCTATCTTCCTCGTCCGGATTCAGTAACGGCTGCTCGCTTCGGTTCTCTTC
. : . : . : . : . : . :
JMFF034M22+ TTCATGCGAACCCATTTCTATTTCCTTCACTCCCTCACAACAATCTCAGAGAGACCATTA
JMSF013K09+ TTCATGCGAACCCATTTCTATTTCCTTCACTCCCTCACAACAATCTCAGAGAGACCATTA
JMSF029L23+ TTCATGCGAACCCATTTCTATTTCCTTCACTCCCTCACAACAATCTCAGAGAGACCATTA
____________________________________________________________
consensus TTCATGCGAACCCATTTCTATTTCCTTCACTCCCTCACAACAATCTCAGAGAGACCATTA
. : . : . : . : . : . :
JMFF034M22+ AC
JMSF013K09+ ACACGACCTTCGGGGAAGGTTTTCTT
JMSF029L23+ ACACGACCTTCGGGGAAGGTTTTCTTACACGCAAATGGAGCGGGGAAGAAAGAAGTTTTC
____________________________________________________________
consensus ACACGACCTTCGGGGAAGGTTTTCTTACACGCAAATGGAGCGGGGAAGAAAGAAGTTTTC