| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF004K12 | Sequence | 342 | 003725 (8) | 198 | 003725 (8) | ref|XP_006352897.1| | 64.3 | PREDICTED: plastoglobulin-1, chloroplastic-like [Solanum tuberosum] | |||
| JMSF024J07 | Sequence | 664 | 003725 (8) | ref|XP_009608239.1| | 2e-53 | PREDICTED: plastoglobulin-1, chloroplastic isoform X2 [Nicotiana tomentosiformi | 767 | 003725 (8) | ref|XP_006352897.1| | 409 | PREDICTED: plastoglobulin-1, chloroplastic-like [Solanum tuberosum] |
| JMSF029K14 | Sequence | 673 | 003725 (8) | ref|XP_009608239.1| | 1e-49 | PREDICTED: plastoglobulin-1, chloroplastic isoform X2 [Nicotiana tomentosiformi | 701 | 003725 (8) | ref|XP_006352897.1| | 372 | PREDICTED: plastoglobulin-1, chloroplastic-like [Solanum tuberosum] |
| JMSF043D21 | Sequence | 812 | 003725 (8) | ref|XP_009608239.1| | 3e-80 | PREDICTED: plastoglobulin-1, chloroplastic isoform X2 [Nicotiana tomentosiformi | 707 | 003725 (8) | ref|XP_006352897.1| | 370 | PREDICTED: plastoglobulin-1, chloroplastic-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF029K14- GGCCTTCATGAAGCTCTGATAGAACCAAGTTTA
rJMSF043D21- GGCCTTCATGAAGCTCTGATAGAACCAAGTTTA
rJMSF004K12- GGCCTTCATGAAGCTCTGATAGAACCAAGTTTA
rJMSF024J07- TGTGAGATTAAATTTGAAATTTTGGCCTTCATGAAGCTCTGATAGAACCAAGTTTA
____________________________________________________________
consensus TGTGAGATTAAATTTGAAATTTTGGCCTTCATGAAGCTCTGATAGAACCAAGTTTA
. : . : . : . : . : . :
rJMSF029K14- TTAATCTAAGAATTTAGAATCAACAAAAACTGTACTGCTTTAATATACA-AGGGAACTTC
rJMSF043D21- TTAATCTAAGAATTTAGAATCAACAAAAACTGTACTGCTTTAATATACA-AGGGAACTTC
rJMSF004K12- TTANTCTAANAATTTAGAATCAACAAAAACTGTACTGCTTTANTATACACAGGGAACTTC
rJMSF024J07- TTAATCTAAGAATTTAGAATCAACAAAAACTGTACTGCTTTAATATACA-AGGGAACTTC
____________________________________________________________
consensus TTAATCTAAGAATTTAGAATCAACAAAAACTGTACTGCTTTAATATACA-AGGGAACTTC
. : . : . : . : . : . :
rJMSF029K14- CTTCCTTAACAAGCACGAAAAGGCCACCATCTCCTCTGGAGATTCGCATATCCTTATCAA
rJMSF043D21- CTTCCTTAACAAGCACGAAAAGGCCACCATCTCCTCTGGAGATTCGCATATCCTTATCAA
rJMSF004K12- CTTCCTTAACAAGCACGANAAGGCCACCATCTCCTCTGGAGATTCGCATATCCTTATCAN
rJMSF024J07- CTTCCTTAACAAGCACGAAAAGGCCACCATCTCCTCTGGAGATTCGCATATCCTTATCAA
____________________________________________________________
consensus CTTCCTTAACAAGCACGAAAAGGCCACCATCTCCTCTGGAGATTCGCATATCCTTATCAA
. : . : . : . : . : . :
rJMSF029K14- GGTATGTAGTAAGAAGCCAGGAGTTAGACCTCTCACCAGGAATTGGGACCTTTAGAGGGG
rJMSF043D21- GGTATGTAGTAAGAAGCCAGGAGTTAGACCTCTCACCAGGAATTGGGACCTTTAGAGGGG
rJMSF004K12- GGTATGTAGTAAGAAGCCNGGAGTTANACCTCTCACCAGGA
rJMSF024J07- GGTATGTAGTAAGAAGCCAGGAGTTAGACCTCTCACCAGGAATTGGGACCTTTAGAGGGG
____________________________________________________________
consensus GGTATGTAGTAAGAAGCCAGGAGTTAGACCTCTCACCAGGAATTGGGACCTTTAGAGGGG
. : . : . : . : . : . :
rJMSF029K14- GCTGACCGGAAATTGTTTGAGCTATACCAGCCACAGCATTTTCGAGAGGACCCATAGATT
rJMSF043D21- GCTGACCGGAAATTGTTTGAGCTATACCAGCCACAGCATTTTCGAGAGGACCCATAGATT
rJMSF024J07- GCTGACCGGAAATTGTTTGAGCTATACCAGCCACAGCATTTTCGAGAGGACCCATAGATT
____________________________________________________________
consensus GCTGACCGGAAATTGTTTGAGCTATACCAGCCACAGCATTTTCGAGAGGACCCATAGATT
. : . : . : . : . : . :
rJMSF029K14- GTTGCACAGGAGACAAATTGATCTTTTGCCCAAAAATATCCACGTTCTCTGGCAAATCAA
rJMSF043D21- GTTGCACAGGAGACAAATTGATCTTTTGCCCAAAAATATCCACGTTCTCTGGCAAATCAA
rJMSF024J07- GTTGCACAGGAGACAAATTGATCTTTTGCCCAAAAATATCCACGTTCTCTGGCAAATCAA
____________________________________________________________
consensus GTTGCACAGGAGACAAATTGATCTTTTGCCCAAAAATATCCACGTTCTCTGGCAAATCAA
. : . : . : . : . : . :
rJMSF029K14- TTCTTGACTTGATTTCAGGAGGTTTAAAGCTGCCTTCCTTAAATTCAACCTGTATTCTTG
rJMSF043D21- TTCTTGACTTGATTTCAGGAGGTTTAAAGCTGCCTTCCTTAAATTCAACCTGTATTCTTG
rJMSF024J07- TTCTTGACTTGATTTCAGGAGGTTTAAAGCTGCCTTCCTTAAATTCAACCTGTATTCTTG
____________________________________________________________
consensus TTCTTGACTTGATTTCAGGAGGTTTAAAGCTGCCTTCCTTAAATTCAACCTGTATTCTTG
. : . : . : . : . : . :
rJMSF029K14- AGGGGGTTCTAACCTCAAAGGTTGCAGTGGCGCTAAAAGAGAGTGTGGCAACAGGACTTG
rJMSF043D21- AGGGGGTTCTAACCTCAAAGGTTGCAGTGGCGCTAAAAGAGAGTGTGGCAACAGGACTTG
rJMSF024J07- AGGGGGTTCTAACCTCAAAGGTTGCAGTGGCGCTAAAAGAGAGTGTGGCAACAGGACTTG
____________________________________________________________
consensus AGGGGGTTCTAACCTCAAAGGTTGCAGTGGCGCTAAAAGAGAGTGTGGCAACAGGACTTG
. : . : . : . : . : . :
rJMSF029K14- ATAATGATGTGGAGTTCTCGATTGTAAGGCTGCTTGTGTCAATCAATTGAGAAATCTTTT
rJMSF043D21- ATAATGATGTGGAGTTCTCGATTGTAAGGCTGCTTGTGTCAATCAATTGAGAAATCTTTT
rJMSF024J07- ATAATGATGTGGAGTTCTCGATTGTAAGGCTGCTTGTGTCAATCAATTGAGAAATCTTTT
JMSF043D21+ ATTGTAAGGCTGCTTGTGTCAATCAATTGAGAAATCTTTT
____________________________________________________________
consensus ATAATGATGTGGAGTTCTCGATTGTAAGGCTGCTTGTGTCAATCAATTGAGAAATCTTTT
. : . : . : . : . : . :
rJMSF029K14- CAACTTTAACCAATGGAATGTTGCCCACAGCAAGGAGGGGTAATAATTCAGAAAATGCTG
rJMSF043D21- CAACTTTAACCAATGGAATGTTGCCCACAGCAAGGAGGGGTAATAATTCAGAAAATGCTG
rJMSF024J07- CAACTTTAACCAATGGAATGTTGCCCACAGCAAGGAGGGGTAATAATTCAGAAAATGCTG
JMSF043D21+ CAACTTTAACCAATGGAATGTTGCCCACAGCAAGGAGGGGTAATAATTCAGAAAATGCTG
____________________________________________________________
consensus CAACTTTAACCAATGGAATGTTGCCCACAGCAAGGAGGGGTAATAATTCAGAAAATGCTG
. : . : . : . : . : . :
rJMSF029K14- TAAACAGTAAAATCCAGTTCCCATCAAGCAATTCGGGAGATTCCGTCGGCGCCGGAGTTG
rJMSF043D21- TAAACAGTAAAATCCAGTTCCCATCAAGCAATTCGGGAGATTCCGTCGGCGCCGGAGTTG
rJMSF024J07- TAAACAGTAAAATCCAGTTCCCATCAAGCAATTCGGGAGATTCCGTCGGCGCCGGAGTTG
JMSF024J07+ TTCGGGAGATTCCGTCGGCGCCGGAGTTG
JMSF043D21+ TAAACAGTAAAATCCAGTTCCCATCAAGCAATTCGGGAGATTCCGTCGGCGCCGGAGTTG
JMSF029K14+ GGCGCCGGAGTTG
____________________________________________________________
consensus TAAACAGTAAAATCCAGTTCCCATCAAGCAATTCGGGAGATTCCGTCGGCGCCGGAGTTG
. : . : . : . : . : . :
rJMSF029K14- GATTAGCGGCCTCCAGCTGAGATACAAGCTCCAGAGCCTCGGCTCGTATCTCCGTTGAGG
rJMSF043D21- GATTAGCGGCCTCCAGCTGAGATACAAGCTCCAGAGCCTCGGCTCGTATCTCCGTTGAG
rJMSF024J07- GATTAGCGGCCTCCAGCTGAGATACAAGCTCCAGAGCCTCGGCTCGTATCTCCGTTGAGG
JMSF024J07+ GATTAGCGGCCTCCAGCTGAGATACAAGCTCCAGAGCCTCGGCTCGTATCTCCGTTGAGG
JMSF043D21+ GATTAGCGGCCTCCAGCTGAGATACAAGCTCCAGAGCCTCGGCTCGTATCTCCGTTGAGG
JMSF029K14+ GATTAGCGGCCTCCAGCTGAGATACAAGCTCCAGAGCCTCGGCTCGTATCTCCGTTGAGG
____________________________________________________________
consensus GATTAGCGGCCTCCAGCTGAGATACAAGCTCCAGAGCCTCGGCTCGTATCTCCGTTGAGG
. : . : . : . : . : . :
rJMSF029K14- CCC
rJMSF024J07- CCCGGAACCCGAAATCCGTACCGTAAACCGTGTCCGCCAAGCATCTCTTCAG
JMSF024J07+ CCCGGAACCCGAAATCCGTACCGTAAACCGTGTCCGCCAAGCATCTCTTCAGGTCCCGAA
JMSF043D21+ CCCGGAACCCGAAATCCGTACCGTAAACCGTGTCCGCCAAGCATCTCTTCAGGTCCCGAA
JMSF029K14+ CCCGGAACCCGAAATCCGTACCGTAAACCGTGTCCGCCAAGCATCTCTTCAGGTCCCGAA
____________________________________________________________
consensus CCCGGAACCCGAAATCCGTACCGTAAACCGTGTCCGCCAAGCATCTCTTCAGGTCCCGAA
. : . : . : . : . : . :
JMSF024J07+ GCCTCTCGTCTTCGCCACTACCCGTTTCGGGAGCCCCATTTCCCCCTAACTCATTCCCGC
JMSF043D21+ GCCTCTCGTCTTCGCCACTACCCGTTTCGGGAGCCCCATTTCCCCCTAACTCATTCCCGC
JMSF029K14+ GCCTCTCGTCTTCGCCACTACCCGTTTCGGGAGCCCCATTTCCCCCTAACTCATTCCCGC
____________________________________________________________
consensus GCCTCTCGTCTTCGCCACTACCCGTTTCGGGAGCCCCATTTCCCCCTAACTCATTCCCGC
. : . : . : . : . : . :
JMSF024J07+ CCCACTCATCCTCGTCCTGGGGAGGATCGGAGTCCGCGAATTTCGTGGTCGGTTGGGTCT
JMSF043D21+ CCCACTCATCCTCGTCCTGGGGAGGATCGGAGTCCGCGAATTTCGTGGTCGGTTGGGTCT
JMSF029K14+ CCCACTCATCCTCGTCCTGGGGAGGATCGGAGTCCGCGAATTTCGTGGTCGGTTGGGTCT
____________________________________________________________
consensus CCCACTCATCCTCGTCCTGGGGAGGATCGGAGTCCGCGAATTTCGTGGTCGGTTGGGTCT
. : . : . : . : . : . :
JMSF024J07+ CCGGTTCCGACTTCTCGCCCCACTCGTCCACAAAAGCCGAGGGCTTATTATCCGACACGT
JMSF043D21+ CCGGTTCCGACTTCTCGCCCCACTCGTCCACAAAAGCCGAGGGCTTATTATCCGACACGT
JMSF029K14+ CCGGTTCCGACTTCTCGCCCCACTCGTCCACAAAAGCCGAGGGCTTATTATCCGACACGT
____________________________________________________________
consensus CCGGTTCCGACTTCTCGCCCCACTCGTCCACAAAAGCCGAGGGCTTATTATCCGACACGT
. : . : . : . : . : . :
JMSF024J07+ CGTCCGGTTTGTTAATTCCCCCGGCGATAGGCAGCCCAGATGGTTTCGGGTCCGACGGCT
JMSF043D21+ CGTCCGGTTTGTTAATTCCCCCGGCGATAGGCAGCCCAGATGGTTTCGGGTCCGACGGCT
JMSF004K12+ TTCCCCCGGCGATAGGCAGCCCAGATGGTTTCGGGTCCGACGGCT
JMSF029K14+ CGTCCGGTTTGTTAATTCCCCCGGCGATAGGCAGCCCAGATGGTTTCGGGTCCGACGGCT
____________________________________________________________
consensus CGTCCGGTTTGTTAATTCCCCCGGCGATAGGCAGCCCAGATGGTTTCGGGTCCGACGGCT
. : . : . : . : . : . :
JMSF024J07+ CATTGAGCGAGGAGTAGGAAAGTCGAATCGGGGAGGCTCTTGACCTAGGGTTTAGAGCCG
JMSF043D21+ CATTGAGCGAGGAGTAGGAAAGTCGAATCGGGGAGGCTCTTGACCTAGGGTTTAGAGCCG
JMSF004K12+ CATTGAGCGAGGAGTAGGAAAGTCGAATCGGGGAGGCTCTTGACCTAGGGTTTAGAGCCG
JMSF029K14+ CATTGAGCGAGGAGTAGGAAAGTCGAATCGGGGAGGCTCTTGACCTAGGGTTTAGAGCCG
____________________________________________________________
consensus CATTGAGCGAGGAGTAGGAAAGTCGAATCGGGGAGGCTCTTGACCTAGGGTTTAGAGCCG
. : . : . : . : . : . :
JMSF024J07+ AGGAGAATGGAAGAGCTTCGAAGGGTTTAACGGTGGCCTTTGGGGTTTTGGCGCTCAACA
JMSF043D21+ AGGAGAATGGAAGAGCTTCGAAGGGTTTAACGGTGGCCTTTGGGGTTTTGGCGCTCAACA
JMSF004K12+ AGGAGAATGGAAGAGCTTCGAAGGGTTTAACGGTGGCCTTTGGGGTTTTGGCGCTCAACA
JMSF029K14+ AGGAGAATGGAAGAGCTTCGAAGGGTTTAACGGTGGCCTTTGGGGTTTTGGCGCTCAACA
____________________________________________________________
consensus AGGAGAATGGAAGAGCTTCGAAGGGTTTAACGGTGGCCTTTGGGGTTTTGGCGCTCAACA
. : . : . : . : . : . :
JMSF024J07+ AAAAGGAGGCGCATGGCGTGTGGAGGAGAGACATTATGCTTTAGCGGTGGTATTCAGTGC
JMSF043D21+ AAAAGGAGGCGCATGGCGTGTGGAGGAGAGACATTATGCTTTAGCGGTGGTATTCAGTGC
JMSF004K12+ AAAAGGAGGCGCATGGCGTGTGGAGGAGAGACATTATGCTTTAGCGGTGGTATTCAGTGC
JMSF029K14+ AAAAGGAGGCGCATGGCGTGTGGAGGAGAGACATTATGCTTTAGCGGTGGTATTCAGTGC
____________________________________________________________
consensus AAAAGGAGGCGCATGGCGTGTGGAGGAGAGACATTATGCTTTAGCGGTGGTATTCAGTGC
. : . : . : . : . : . :
JMSF024J07+ CCAGGCGGCGGCGCAAACGGCGGCGTTAGCGGCGGTTTCAGGCACAAGTGGAGGTGCTAT
JMSF043D21+ CCAGGCGGCGGCGCAAACGGCGGCGTTAGCGGCGGTTTCAGGCACAAGTGGAGGTGCTAT
JMSF004K12+ CCAGGCGGCGGCGCAAACGGCGGCGTTAGCGGCGGTTTCAGGCACAAGTGGAGGTGCTAT
JMSF029K14+ CCAGGCGGCGGCGCAAACGGCGGCGTTAGCGGCGGTTTCAGGCACAAGTGGAGGTGCTAT
____________________________________________________________
consensus CCAGGCGGCGGCGCAAACGGCGGCGTTAGCGGCGGTTTCAGGCACAAGTGGAGGTGCTAT
. : . : . : . : . : . :
JMSF024J07+ CGATTTTTATTGGGATTCCTACTATTCCTTCTTC
JMSF043D21+ CGATTTTTATTGGGATTCCTACTATTCCTTCTTCATTTCTCAATTTTTCCT
JMSF004K12+ CGATTTTTATTGGGATTCCTACTATTCCTTCTTCATTTCTCAATTTTTCCT
JMSF029K14+ CGATTTTTATTGGGATTCCTACTATTCCTTCTTCATTTCTCAATTTTTCCTATTCATTCC
____________________________________________________________
consensus CGATTTTTATTGGGATTCCTACTATTCCTTCTTCATTTCTCAATTTTTCCTATTCATTCC