| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008L20 | Sequence | 577 | 003723 (7) | emb|CDP01049.1| | 5e-71 | unnamed protein product [Coffea canephora] | 729 | 022301 | |||
| JMFF040A19 | Sequence | 391 | 003723 (7) | emb|CDP01049.1| | 2e-64 | unnamed protein product [Coffea canephora] | 623 | 003723 (7) | |||
| JMFF046K22 | Sequence | 568 | 003723 (7) | emb|CDP01049.1| | 3e-70 | unnamed protein product [Coffea canephora] | |||||
| JMSF029I19 | Sequence | 603 | 003723 (7) | emb|CDP01049.1| | 2e-69 | unnamed protein product [Coffea canephora] | |||||
| JMSF040G22 | Sequence | 580 | 003723 (7) | ref|XP_010065584.1| | 1e-44 | PREDICTED: serine/arginine-rich splicing factor SC35-like isoform X1 [Eucalyptu | 807 | 003723 (7) | ref|XP_009761421.1| | 7e-12 | PREDICTED: serine/arginine-rich splicing factor SC35-like [Nicotiana sylvestris |
This contig is upended
. : . : . : . : . : . :
rJMSF040G22- AGCAGAAGAAATTCCGAGTCCACCGCATAGCCACAATGCTAACAGTAAAGTAAA
____________________________________________________________
consensus AGCAGAAGAAATTCCGAGTCCACCGCATAGCCACAATGCTAACAGTAAAGTAAA
. : . : . : . : . : . :
rJMFF040A19- ACTATTATCATAACTAAGTATTG
rJMSF040G22- CCAAAACCAGTTGCCAATCCACAGACAACAGTACACAACTATTATCATAACTAAGTATTG
____________________________________________________________
consensus CCAAAACCAGTTGCCAATCCACAGACAACAGTACACAACTATTATCATAACTAAGTATTG
. : . : . : . : . : . :
rJMFF040A19- CAATGCATCAAGTACAACAAAAGAGTAGAAACCTTAAAAATAAGTTTGGGCCAATCATTT
rJMSF040G22- CAATGCATCAAGTACAACAAAAGAGTAGAAACCTTAAAAATAAGTTTGGGCCAATCATTT
____________________________________________________________
consensus CAATGCATCAAGTACAACAAAAGAGTAGAAACCTTAAAAATAAGTTTGGGCCAATCATTT
. : . : . : . : . : . :
rJMFF040A19- CTAGAAAGCACTAAACAGACGGTTCGGTGTTGATATGGAACTGCCCGCTTCTGGGATAAG
rJMSF040G22- CTAGAAAGCACTAAACAGACGGTTCGGTGTTGATATGGAACTGCCCGCTTCTGGGATAAG
____________________________________________________________
consensus CTAGAAAGCACTAAACAGACGGTTCGGTGTTGATATGGAACTGCCCGCTTCTGGGATAAG
. : . : . : . : . : . :
rJMFF040A19- GAAACTGAAACAGACCCGTGTTGGGGACCCATCAATTGCTCATTCAATTCATTCATCANC
rJMSF040G22- GAAACTGAAACAGACCCGTGTTGGGGACCCATCAATTGCTCATTCAATTCATTCATCAGC
____________________________________________________________
consensus GAAACTGAAACAGACCCGTGTTGGGGACCCATCAATTGCTCATTCAATTCATTCATCAGC
. : . : . : . : . : . :
rJMFF040A19- ATCATAACGAGGAGATGGGCTACGAGAATCAGCCCGCCGCCCACGGGGTGACAAACTTTT
rJMSF040G22- ATCATAACGAGGAGATGGGCTACGAGAATCAGCCCGCCGCCCACGGGGTGACAAACTTTT
____________________________________________________________
consensus ATCATAACGAGGAGATGGGCTACGAGAATCAGCCCGCCGCCCACGGGGTGACAAACTTTT
. : . : . : . : . : . :
rJMFF040A19- CGGAGTTAGAGAACGTTCATTGTGATTCCCTGCTTTTGGGCTTCCATCCCTAGGGGAAGT
rJMSF040G22- CGGAGTTAGAGAACGTTCATTGTGATTCCCTGCTTTTGGGCTTCCATCCCTAGGGGAAGT
____________________________________________________________
consensus CGGAGTTAGAGAACGTTCATTGTGATTCCCTGCTTTTGGGCTTCCATCCCTAGGGGAAGT
. : . : . : . : . : . :
rJMFF040A19- CCTGCGAGGAGATGGGCTCCTCCTTGGACTTGGGCTGCGCCGAGCAGGAGAGGCACTTCC
rJMSF040G22- CCTGCGAGGAGATGGGCTCCTCCTTGGACTTGGGCTGCGCCGAGCAGGAGAGGCACTTCC
____________________________________________________________
consensus CCTGCGAGGAGATGGGCTCCTCCTTGGACTTGGGCTGCGCCGAGCAGGAGAGGCACTTCC
. : . : . : . : . : . :
rJMFF040A19- ATAAGAACGACTTCGACTGCGCCTCTCATCATCATATCTACCTCTCCCACGATCTTTGCG
rJMSF040G22- ATAAGAACGACTTCGACTGCGCCTCTCATCATCATATCTACCTCTCCCACGATCTTTGCG
JMSF040G22+ TGCG
JMSF029I19+ TGCG
____________________________________________________________
consensus ATAAGAACGACTTCGACTGCGCCTCTCATCATCATATCTACCTCTCCCACGATCTTTGCG
. : . : . : . : . : . :
rJMFF040A19- GTTATCAGGACTCGCACTGCGACTTCTGCTTCGGGGAGGATAGTCTCGTTCCTTTCCACG
rJMSF040G22- GTTATCAGGACTCGCACTGCGACTTCTGCTTCGGGGAGGATAGTCTCGTTCCTTTCCACG
JMFF008L20+ TTATCAGGACTCGCACTGCGACTTCTGCTTCGGGGAGGATAGTCTCGTTCCTTTCCACG
JMFF046K22+ CTCGCACTGCGACTTCTGTTTCGGGGAGGATAGTCTCGTTCCTTTCCACG
JMSF040G22+ GTTATCAGGACTCGCACTGCGACTTCTGCTTCGGGGAGGATAGTCTCGTTCCTTTCCACG
JMSF029I19+ GTTATCAGGACTCGCACTGCGACTTCTGCTTCGGGGAGGATAGTCTCGTTCCTTTCCACG
____________________________________________________________
consensus GTTATCAGGACTCGCACTGCGACTTCTGCTTCGGGGAGGATAGTCTCGTTCCTTTCCACG
. : . : . : . : . : . :
rJMFF040A19- GTAGCGATCACGTTCATACCTTCCTTTACTTCTGCTCCTGCTTCTCCTTCTATATT-CCC
rJMSF040G22- GTAGCGATCACGTTCATACCTTCCTTTACTTCTGCTCCTGCTTCTCCTTCTATATT-CCC
JMFF008L20+ GTAGCGATCACGTTCATACCTTCCTTTACTTCTGCTCCTGCTTCTCCTTCTATATTCCCC
JMFF046K22+ GTAGCGATCACGTTCATACCTTCCTTTACTTCTGCTCCTGCTTCTCCTTCTATATT-CCC
JMSF040G22+ GTAGCGATCACGTTCATACCTTCCTTTACTTCTGCTCCTGCTTCTCCTTCTATATT-CCC
JMSF029I19+ GTAGCGATCACGTTCATACCTTCCTTTACTTCTGCTCCTGCTTCTCCTTCTATATT-CCC
____________________________________________________________
consensus GTAGCGATCACGTTCATACCTTCCTTTACTTCTGCTCCTGCTTCTCCTTCTATATT-CCC
. : . : . : . : . : . :
rJMFF040A19- TGTCACTGTNATGATCTCTATACTTTGGTTTAGGACTGTGGCTCCTTGACCGTCCTCTTG
rJMSF040G22- TGTCACTGTAATGATCTCTATACTTTGGTTTAGGACTGTGGCTCCTTGACCGTCCTCTTG
JMFF008L20+ TGTCACTGTAATGATCTCTATACTTTGGTTTAGGACTGTGGCTCCTTGACCGTCCTCTTG
JMFF046K22+ TGTCACTGTAATGATCTCTATACTTTGGTTTAGGACTGTGGCTCCTTGACCGTCCTCTTG
JMSF040G22+ TGTCACTGTAATGATCTCTATACTTTGGTTTAGGACTGTGGCTCCTTGACCGTCCTCTTG
JMSF029I19+ TGTCACTGTAATGATCTCTATACTTTGGTTTAGGACTGTGGCTCCTTGACCGTCCTCTTG
____________________________________________________________
consensus TGTCACTGTAATGATCTCTATACTTTGGTTTAGGACTGTGGCTCCTTGACCGTCCTCTTG
. : . : . : . : . : . :
rJMFF040A19- T
rJMSF040G22- TCTTGTACACAGGCTCCTCAATTCTTCCCTTGTGAATCCTTTCAGCATTGGGGCCATACT
JMFF008L20+ TCTTGTACACAGGCTCCTCAATTCTTCCCTTGTGAATCCTTTCAGCATTGGGGCCATACT
JMFF046K22+ TCTTGTACACAGGCTCCTCAATTCTTCCCTTGTGAATCCTTTCAGCATTGGGGCCATACT
JMSF040G22+ TCTTGTACACAGGCTCCTCAATTCTTCCCTTGTGAATCCTTTCAGCATTGGGGCCATACT
JMFF040A19+ CTTGTGAATCCTTTCAGCATTGGGGCCATACT
JMSF029I19+ TCTTGTACACAGGCTCCTCAATTCTTCCCTTGTGAATCCTTTCAGCATCGGGGCCATACT
____________________________________________________________
consensus TCTTGTACACAGGCTCCTCAATTCTTCCCTTGTGAATCCTTTCAGCATTGGGGCCATACT
. : . : . : . : . : . :
rJMSF040G22- TTGCAAACTGAACCATCATCTCTCTTCCATCAAC
JMFF008L20+ TTGCAAACTGAACCATTATCTCTCTTCCATCAACAAGTTTTCCATCAAGCTTTTCAACTG
JMFF046K22+ TTGCAAACTGAACCATTATCTCTCTTCCATCAACAAGTTTTCCATCAAGCTTTTCAACTG
JMSF040G22+ TTGCAAACTGAACCATCATCTCTCTTCCATCAACAAGTTTTCCATCAAGCTTTTCAACTG
JMFF040A19+ TTGCAAACTGAACCATTATCTCTCTTCCATCAACAAGTTTTCCATCAAGCTTTTCAACTG
JMSF029I19+ TTGCAAACTGAACCATTATCTCTCTTCCATCAACAAGTTTTCCATCAAGCTTTTCAACTG
____________________________________________________________
consensus TTGCAAACTGAACCATTATCTCTCTTCCATCAACAAGTTTTCCATCAAGCTTTTCAACTG
. : . : . : . : . : . :
JMFF008L20+ CCTTCTGAGCCTCATCCTGATATTTGTACCTGACAAATGCAAAACCCCGCGAGTCCCCAG
JMFF046K22+ CCTTCTGAGCCTCATCCTGATATTTGTACCTGACAAATGCAAAACCCCGCGAGTCCCCAG
JMSF040G22+ CCTTCTGAGCCTCATCCTGATATTTGTACCTGACAAATGCAAAACCCCGCGAGTCCCCAG
JMFF040A19+ CCTTCTGAGCCTCATCCTGATATTTGTACCTGACAAATGCAAAACCCCGCGAGTCCCCAG
JMSF029I19+ CCTTCTGAGCCTCATCCTGATATTTGTACCTGACAAATGCAAAACCCCGCGAGTCCCCAG
____________________________________________________________
consensus CCTTCTGAGCCTCATCCTGATATTTGTACCTGACAAATGCAAAACCCCGCGAGTCCCCAG
. : . : . : . : . : . :
JMFF008L20+ TCCTTCGGTCTCTAGGGATGAAGACGTCGACAACTTTCCCGTACCTATCGAAGAGGGGAT
JMFF046K22+ TCCTTCGGTCTCTAGGGATGAAGACGTCGACAACTTTCCCGTACCTATCGAAGAGGGGAT
JMSF040G22+ TCCTTCGG--TCTAGGGATGAAGACGTCGACAACTTTCCCGTACCTATCGAAGAGGGGAT
JMFF040A19+ TCCTTCGGTCTCTAGGGATGAAGACGTCGACAACTTTCCCGTACCTATCGAAGAGGGGAT
JMSF029I19+ TCCTTCGGTCTCTAGGGATGAAGACGTCGACAACTTTCCCGTACCTATCGAAGAGGGGAT
____________________________________________________________
consensus TCCTTCGGTCTCTAGGGATGAAGACGTCGACAACTTTCCCGTACCTATCGAAGAGGGGAT
. : . : . : . : . : . :
JMFF008L20+ ACAAGTCATCGGCGGTGGTACGGAAAGTGATGTTGAGGACGAGGAGAGAGAAGGTGTCTC
JMFF046K22+ ACAAGTCATCGGCGGTGGTACGGAAAGTGATGTTGAGGACGAGGAGAGAGAAGGTGTCTC
JMSF040G22+ ACAAGTCATCGGCGGTGGTACGGAAAGTGATGTTGAGGACGAGGAGAGAGAAGGTGTCTC
JMFF040A19+ ACAAGTCATCGGCGGTGGTACGGAAAGTGATGTTGAGGACGAGGAGAGAGAAGGTGTCTC
JMSF029I19+ ACAAGTCATCGGCGGTGGTACGGAAAGTGATGTTGAGGACGAGGAGAGAGAAGGTGTCTC
____________________________________________________________
consensus ACAAGTCATCGGCGGTGGTACGGAAAGTGATGTTGAGGACGAGGAGAGAGAAGGTGTCTC
. : . : . : . : . : . :
JMFF008L20+ TGATGTCCGGAGGGCCTGATCTTCCGAAGTGCGACATCGCCGGCTGCTTTAGGAGCTCAG
JMFF046K22+ TGATGTCCGGAGGGCCTGATCTTCCGAAGTGCGACATCGCCGGCTGCTTTAGGAGCTCCT
JMSF040G22+ TGATGTCCGGAGGGCCTGATCTTCCGAAGTGCGACATCGCCGGCTGCTTTAGGAGCTCAG
JMFF040A19+ TGATGTCCGGAGGGCCTGATCTTCCGAAGTGCGACATCGCCGGCTGCTTTAGGAGCTCAG
JMSF029I19+ TGATGTCCGGAGGGCCTGATCTTCCGAAGTGCGACATCGCCGGCTGCTTTAGGAGCTCAG
____________________________________________________________
consensus TGATGTCCGGAGGGCCTGATCTTCCGAAGTGCGACATCGCCGGCTGCTTTAGGAGCTCAG
. : . : . : . : . : . :
JMFF008L20+ AACTCTCTCGAAGTAGCAGAAATAAGAAGAATGTTGTT
JMFF046K22+ AACTCTCTCGAAGTAGCAGAAATAAGAAGAATGTTGTT
JMSF040G22+ AACTCTCTCGAAGTAGCAGAAATAAGAAGAATGTTGTT
JMFF040A19+ AACTCTCTCGAAGTAGCAGAAATAAGAAGAATGTTGTTAGGGTTTGAGAGGGCGACCGT
JMSF029I19+ AACTCTCTCGAAGTAGCAGAAATAAGAAGAATGTTGTTAGGGTTTGAGAGGGCGACCGTC
____________________________________________________________
consensus AACTCTCTCGAAGTAGCAGAAATAAGAAGAATGTTGTTAGGGTTTGAGAGGGCGACCGTC