| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008E01 | Sequence | 490 | 003718 (5) | ref|XP_009622162.1| | 4e-14 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X1 [Nicotiana tomentos | |||||
| JMSF006F18 | Sequence | 464 | 003718 (5) | 164 | 006387 (13) | ||||||
| JMSF029A10 | Sequence | 671 | 003718 (5) | ref|XP_009622163.1| | 3e-30 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X2 [Nicotiana tomentos | 763 | 010088 (4) | ref|XP_006470683.1| | 1e-69 | PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Citrus sinens |
| JMSF042J21 | Sequence | 261 | 003718 (5) | 717 | 010088 (4) | ref|XP_006470683.1| | 5e-63 | PREDICTED: homeobox protein knotted-1-like LET12-like isoform X2 [Citrus sinens | |||
| JMSF048G15 | Sequence | 641 | 003718 (5) | ref|XP_009622162.1| | 2e-39 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X1 [Nicotiana tomentos | 829 | 016209 | emb|CBI21101.3| | 7e-77 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF048G15+ TTGTTCTTTAAAGG
JMSF029A10+ TTCTTTAAAGG
____________________________________________________________
consensus TTGTTCTTTAAAGG
. : . : . : . : . : . :
JMSF048G15+ AAGACAGCAACATAACATAATGTGTCATAAATTGATCAAGGTCTTTATCGTCTAGGGGAG
JMSF029A10+ AAGACAGCAACATAACATAANGNGTCATAAATTGATCAAGGTNTTNATNGTNTAGGGGAG
____________________________________________________________
consensus AAGACAGCAACATAACATAATGTGTCATAAATTGATCAAGGTCTTTATCGTCTAGGGGAG
. : . : . : . : . : . :
JMSF048G15+ GTTGGGGGTGGGCGAGAAGGGAGGAGTAGTTAGCGACGACGTTTTGGGACTGAGCAAGCT
JMSF029A10+ GTNGGGGGTGGGCGAGAAGGGAGGAGTAGTTAGNGANGACGTTTTGGGANTGAGCAAGCT
____________________________________________________________
consensus GTTGGGGGTGGGCGAGAAGGGAGGAGTAGTTAGCGACGACGTTTTGGGACTGAGCAAGCT
. : . : . : . : . : . :
JMSF048G15+ GGGCGTCGATTCTGGGGAGCTGGTCAACGGGCGTGGCGATTCTGAGGCAGGACACGTGAG
JMFF008E01+ TGAGGCAGGACACGTGAG
JMSF029A10+ GGGNGTNGATTNTGGGGAGNTGGTCAACGGGCGTGGNGATTNTGAGGCAGGACACGTGAG
____________________________________________________________
consensus GGGCGTCGATTCTGGGGAGCTGGTCAACGGGCGTGGCGATTCTGAGGCAGGACACGTGAG
. : . : . : . : . : . :
JMSF048G15+ CCGACAGCAATTGATCGTAGAGAGGGTGGTTCAGAAGGTCGGCCTTGCACTTCTCCCTCA
JMFF008E01+ CNGACAGCAATTGATNGTAGAGAGGGTGGTTCAGAAGGTCGGCCTTGCACTTCTCCCTCA
JMSF006F18+ GACAGCAATTGATNGTAGAGAGGGTGGTTCAGAAGGTNGGCCTTGCANTTNTCCCTCA
JMSF029A10+ CCGACAGCAATTGATNGTAGAGAGGGTGGTTCAGAAGGTCGGCCTTGCACTTCTCCCTCA
____________________________________________________________
consensus CCGACAGCAATTGATCGTAGAGAGGGTGGTTCAGAAGGTCGGCCTTGCACTTCTCCCTCA
. : . : . : . : . : . :
JMSF048G15+ CCCAACTACTACTACTACTGCTCCCTCCTGCGCCTTCGAATTCGCCTTCACCGTGCTTCT
JMFF008E01+ CCCAANTANTANTACTACTGCTCCCTCNTGCGCCTTNGAATTCGCCTTCACCGTGNTTNT
JMSF006F18+ CCCAANTANTANTANTANTGNTCCNTCNTGNGCNTTNGAATTNGCNTTCACCGTGNTTNT
JMSF042J21+ TCGCCTTCACCGTGCTTCT
JMSF029A10+ CCCAANTANTANTACTANTGCTCCNTCNTGCGCCTTNGAATTCGCCTTCACCGTGCTTCT
____________________________________________________________
consensus CCCAACTACTACTACTACTGCTCCCTCCTGCGCCTTCGAATTCGCCTTCACCGTGCTTCT
. : . : . : . : . : . :
JMSF048G15+ TAACGTCGGCGGTGGGAGACAGCCAGTTGGTGGAGGAGTCGGAGTTGTTGTTGTTGGAGG
JMFF008E01+ TAACGTCGGCGGTGGGAGACAGCCAGTTGGTGGAGGAGTNGGAGTTGTTGTTGTNGGAGG
JMSF006F18+ TAANGTNGGCGGTGGGAGACAGCCAGTTGGTGGAGGAGTCGGAGTTGTTGTTGTTGGAGG
JMSF042J21+ TAACGTCGGCGGTGGGAG--AGCCAGTTGGTGGAGGAGTCGGAGTTGTTGTTGTTGGAGG
JMSF029A10+ TAACGTCGGCGGTGGGAGACAGCCAGTTGGTGGAGGAGTCGGAGTTGTTGTTGTTGGAGG
____________________________________________________________
consensus TAACGTCGGCGGTGGGAGACAGCCAGTTGGTGGAGGAGTCGGAGTTGTTGTTGTTGGAGG
. : . : . : . : . : . :
JMSF048G15+ TTTGGAGGTGGAGGAAGTTGGAATTATTATTGGGGGAGTCGGAGAAGTGGTGGTGGCGCT
JMFF008E01+ TTTGGAGGTGGAGGAAGTTGGAATTATTATTGGGGGAGTCGGAGAAGTGGTGGTGGCGCT
JMSF006F18+ TTTGGAGGTGGAGGAAGTTGGAATTATTATTGGGGGAGTCGGAGAAGTGGTGGTGGCGCT
JMSF042J21+ TTTGGAGGTGGAGGAAGTTGGAATTATTATTGGGGGAGTCGGAGAAGTGGTGGTGGCGCT
JMSF029A10+ TTTGGAGGTGGAGGAAGTTGGAATTATTATTGGGGGAGTCGGAGAAGTGGTGGTGGCGCT
____________________________________________________________
consensus TTTGGAGGTGGAGGAAGTTGGAATTATTATTGGGGGAGTCGGAGAAGTGGTGGTGGCGCT
. : . : . : . : . : . :
JMSF048G15+ GCAGGCGGAGGAAGACGGAGGTGGAAGGCGGAGGAGATTTTGGAGAAGGAGAAGGCTGGT
JMFF008E01+ GCAGGCGGAGGAAGACGGAGGTGGAAGGCGGAGGAGATTTTGGAGAAGGAGAAGGCTGGT
JMSF006F18+ GCAGGCGGAGGAAGACGGAGGTGGAAGGCGGAGGAGATTTTGGAGAAGGAGAAGGCTGGT
JMSF042J21+ GCAGGCGGAGGAAGACGGAGGTGGAAGGCGGAGGAGATTTTGGAGAAGGAGAAGGCTGGT
JMSF029A10+ GCAGGCGGAGGAAGACGGAGGTGGAAGGCGGAGGAGATTTTGGAGAAGGAGAAGGCTGGT
____________________________________________________________
consensus GCAGGCGGAGGAAGACGGAGGTGGAAGGCGGAGGAGATTTTGGAGAAGGAGAAGGCTGGT
. : . : . : . : . : . :
JMSF048G15+ CCGGTAGCATAGACCGCAAAACGCCCGCGTTTTGCTGCTGCTCGACGCCCATTTCTTCAG
JMFF008E01+ CCGGTAGCATAGACCGCAAAACGCCCGCGTTTTGCTGCTGCTCGACGCCCATTTCTTCAG
JMSF006F18+ CCGGTAGCATAGACCGCAAAACGCCCGCGTTTTGCTGCTGCTCGACGCCCATTTCTTCAG
JMSF042J21+ CCGGTAGCATAGACCGCAAAACGCCCGCGTTTTGCTGCTGCTCGACGCCCATTTCTTCAG
JMSF029A10+ CCGGTAGCATAGACCGCAAAACGCCCGCGTTTTGCTGCTGCTCGACGCCCATTTCTTCAG
____________________________________________________________
consensus CCGGTAGCATAGACCGCAAAACGCCCGCGTTTTGCTGCTGCTCGACGCCCATTTCTTCAG
. : . : . : . : . : . :
JMSF048G15+ AAAACTGATCCTCAAACATAATACACCACCACCACCTTCTACTCTCTACTCCACCATACA
JMFF008E01+ AAAACTGATCCTCAAACATAATACACCACCACCACCTTCTACTCTCTACTCCACCATACA
JMSF006F18+ AAAACTGATCCTCAAACATAATACACCACCACCACCTTCTACTCTCTACTCCACCATACA
JMSF042J21+ AAAA
JMSF029A10+ AAAACTGATCCTCAAACATAATACACCACCACCACCTTCTACTCTCTACTCCACCATACA
____________________________________________________________
consensus AAAACTGATCCTCAAACATAATACACCACCACCACCTTCTACTCTCTACTCCACCATACA
. : . : . : . : . : . :
JMSF048G15+ CTACGTTAGTTAGTTGTTTTTGTTTT
JMFF008E01+ CTACGTTAGTTAGTTGTTTTTGTTTTTTAAAACACATGCCATCTC
JMSF006F18+ CTACGTTAGTTAGTTGTTTTTGTTTTTTAAAACACATGCCATCTC
JMSF029A10+ CTACGTTAGTTAGTTGTTTTTGTTTTTTAAAACACATGCCATCTCATCCCACTATTTATC
____________________________________________________________
consensus CTACGTTAGTTAGTTGTTTTTGTTTTTTAAAACACATGCCATCTCATCCCACTATTTATC