Contig 003709:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN039E09Sequence639003709 (7)ref|XP_009589125.1|4e-73PREDICTED: histone deacetylase complex subunit SAP18-like [Nicotiana tomentosif
JMSF023O02Sequence662003709 (7)ref|XP_009589125.1|2e-66PREDICTED: histone deacetylase complex subunit SAP18-like [Nicotiana tomentosif630003709 (7)ref|XP_009589125.1|2e-66PREDICTED: histone deacetylase complex subunit SAP18-like [Nicotiana tomentosif
JMSF027J22Sequence638003709 (7)ref|XP_009589125.1|7e-73PREDICTED: histone deacetylase complex subunit SAP18-like [Nicotiana tomentosif637003709 (7)ref|XP_009589125.1|7e-73PREDICTED: histone deacetylase complex subunit SAP18-like [Nicotiana tomentosif
JMSF037M22Sequence664003709 (7)ref|XP_009589125.1|2e-69PREDICTED: histone deacetylase complex subunit SAP18-like [Nicotiana tomentosif636003709 (7)ref|XP_009589125.1|2e-69PREDICTED: histone deacetylase complex subunit SAP18-like [Nicotiana tomentosif

Alignment

This contig is upended


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JMFN039E09+                                                                      T
JMSF023O02+                                                                      T
JMSF037M22+                                                              TGTCTCACT
                      ____________________________________________________________
consensus                                                                TGTCTCACT
 
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rJMSF037M22-                                              AATATGGATATAGGAACTTGGAAA
JMFN039E09+           ATTTCATCACAAAAATACA-TTTACAATCAGAGTCAAATATGGATATAGGAACTTGGAAA
JMSF023O02+           ATTTCATCACAAAAATACATTTTACAATCAGAGTCAAATATGGATATAGGAACTTGGAAA
JMSF037M22+           ATTTCATCACAAAAATACATTTTACAATCAGAGTCAAATATGGATATAGGAACTTGGAAA
rJMSF027J22-                                 ACAATCAGAGTCAAATATGGATATAGGAACTTGGAAA
rJMSF023O02-                                    ATCAGAGTCAAATATGGATATAGGAACTTGGAAA
JMSF027J22+                                 TACAATCAGAGTCAAATATGGATATAGGAACTTGGAAA
                      ____________________________________________________________
consensus             ATTTCATCACAAAAATACATTTTACAATCAGAGTCAAATATGGATATAGGAACTTGGAAA
 
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rJMSF037M22-          ACCAAGCCTGCTAGCAAGACACACTTCTGGAAAAGCTAAAACAACATAACATAAACTAGG
JMFN039E09+           ACCAAGCCTGCTAGCAAGACACACTTCTGGAAAAGCTAAAACAACATAACATAAACTAGG
JMSF023O02+           ACCAAGCCTGCTAGCAAGACACACTTCTGGAAAAGCTAAAACAACATAACATAAACTAGG
JMSF037M22+           ACCAAGCCTGCTAGCAAGACACACTTCTGGAAAAGCTAAAACAACATAACATAAACTAGG
rJMSF027J22-          ACCAAGCCTGCTAGCAAGACACACTTCTGGAAAAGCTAAAACAACATAACATAAACTAGG
rJMSF023O02-          ACCAAGCCTGCTAGCAAGACACACTTCTGGAAAAGCTAAAACAACATAACATAAACTAGG
JMSF027J22+           ACCAAGCCTGCTAGCAAGACACACTTCTGGAAAAGCTAAAACAACATAACATAAACTAGG
                      ____________________________________________________________
consensus             ACCAAGCCTGCTAGCAAGACACACTTCTGGAAAAGCTAAAACAACATAACATAAACTAGG
 
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rJMSF037M22-          TGATAGCACGGTTTCATTTCCGCATCAGATCGTTAAAGTAAACTGCCACATCCAAGTAGT
JMFN039E09+           TGATAGCACGGTTTCATTTCCGCATCAGATCGTTAAAGTAAACTGCCACATCCAAGTAGT
JMSF023O02+           TGATAGCACGGTTTCATTTCCGCATCAGATCGTTAAAGTAAACTGCCACATCCAAGTAGT
JMSF037M22+           TGATAGCACGGTTTCATTTCCGCATCAGATCGTTAAAGTAAACTGCCACATCCAAGTAGT
rJMSF027J22-          TGATAGCACGGTTTCATTTCCGCATCAGATCGTTAAAGTAAACTGCCACATCCAAGTAGT
rJMSF023O02-          TGATAGCACGGTTTCATTTCCGCATCAGATCGTTAAAGTAAACTGCCACATCCAAGTAGT
JMSF027J22+           TGATAGCACGGTTTCATTTCCGCATCAGATCGTTAAAGTAAACTGCCACATCCAAGTAGT
                      ____________________________________________________________
consensus             TGATAGCACGGTTTCATTTCCGCATCAGATCGTTAAAGTAAACTGCCACATCCAAGTAGT
 
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rJMSF037M22-          CACCTATCTCAAATTTCAGATCACTCAAGGTTTGGTTGCCACTATCTGGTCGTCTCCCAC
JMFN039E09+           CACCTATCTCAAATTTCAGATCACTCAAGGTTTGGTTGCCACTATCTGGTCGTCTCCCAC
JMSF023O02+           CAC----CTCAAATTTCAGATCACTCAAGGTTTGGTTGCCACTATCTGGTCGTCTCCCAC
JMSF037M22+           CACCTATCTCAAATTTCAGATCACTCAAGGTTTGGTTGCCACTATCTGGTCGTCTCCCAC
rJMSF027J22-          CACCTATCTCAAATTTCAGATCACTCAAGGTTTGGTTGCCACTATCTGGTCGTCTCCCAC
rJMSF023O02-          CAC----CTCAAATTTCAGATCACTCAAGGTTTGGTTGCCACTATCTGGTCGTCTCCCAC
JMSF027J22+           CACCTATCTCAAATTTCAGATCACTCAAGGTTTGGTTGCCACTATCTGGTCGTCTCCCAC
                      ____________________________________________________________
consensus             CACCTATCTCAAATTTCAGATCACTCAAGGTTTGGTTGCCACTATCTGGTCGTCTCCCAC
 
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rJMSF037M22-          TAGGAATAGAATATGTTTTTCCTACCTCTCTAACTACAAATTTGCCATTTTTATCGGGAT
JMFN039E09+           TAGGAATAGAATATGTTTTTCCTACCTCTCTAACTACAAATTTGCCATTTTTATCGGGAT
JMSF023O02+           TAGGAATAGAATATGTTTTTCCTACCTCTCTAACTACAAATTTGCCATTTTTATCGGGAT
JMSF037M22+           TAGGAATAGAATATGTTTTTCCTACCTCTCTAACTACAAATTTGCCATTTTTATCGGGAT
rJMSF027J22-          TAGGAATAGAATATGTTTTTCCTACCTCTCTAACTACAAATTTGCCATTTTTATCGGGAT
rJMSF023O02-          TAGGAATAGAATATGTTTTTCCTACCTCTCTAACTACAAATTTGCCATTTTTATCGGGAT
JMSF027J22+           TAGGAATAGAATATGTTTTTCCTACCTCTCTAACTACAAATTTGCCATTTTTATCGGGAT
                      ____________________________________________________________
consensus             TAGGAATAGAATATGTTTTTCCTACCTCTCTAACTACAAATTTGCCATTTTTATCGGGAT
 
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rJMSF037M22-          AAACAAAAGCAAAGGACAGCATAGCATCTCTTTTTCGTGCCTCAGGAGCCACTTCTTTAA
JMFN039E09+           AAACAAAAGCAAAGGACAGCATAGCATCTCTTTTTCGTGCCTCAGGAGCCACTTCTTTAA
JMSF023O02+           AAACAAAAGCAAAGGACAGCATAGCATCTCTTTTTCGTGCCTCAGGAGCCACTTCTTTAA
JMSF037M22+           AAACAAAAGCAAAGGACAGCATAGCATCTCTTTTTCGTGCCTCAGGAGCCACTTCTTTAA
rJMSF027J22-          AAACAAAAGCAAAGGACAGCATAGCATCTCTTTTTCGTGCCTCAGGAGCCACTTCTTTAA
rJMSF023O02-          AAACAAAAGCAAAGGACAGCATAGCATCTCTTTTTCGTGCCTCAGGAGCCACTTCTTTAA
JMSF027J22+           AAACAAAAGCAAAGGACAGCATAGCATCTCTTTTTCGTGCCTCAGGAGCCACTTCTTTAA
                      ____________________________________________________________
consensus             AAACAAAAGCAAAGGACAGCATAGCATCTCTTTTTCGTGCCTCAGGAGCCACTTCTTTAA
 
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rJMSF037M22-          CCAGATCAGTGAGTTCACGTAGATTAGCATCCATCCAGGTATAAATCTGAACTTCATCTT
JMFN039E09+           CCAGATCAGTGAGTTCACGTAGATTAGCATCCATCCAGGTATAAATCTGAACTTCATCTT
JMSF023O02+           CCAGATCAGTGAGTTCACGTAGATTAGCATCCATCCAGGTATAAATCTGAACTTCATCTT
JMSF037M22+           CCAGATCAGTGAGTTCACGTAGATTAGCATCCATCCAGGTATAAATCTGAACTTCATCTT
rJMSF027J22-          CCAGATCAGTGAGTTCACGTAGATTAGCATCCATCCAGGTATAAATCTGAACTTCATCTT
rJMSF023O02-          CCAGATCAGTGAGTTCACGTAGATTAGCATCCATCCAGGTATAAATCTGAACTTCATCTT
JMSF027J22+           CCAGATCAGTGAGTTCACGTAGATTAGCATCCATCCAGGTATAAATCTGAACTTCATCTT
                      ____________________________________________________________
consensus             CCAGATCAGTGAGTTCACGTAGATTAGCATCCATCCAGGTATAAATCTGAACTTCATCTT
 
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rJMSF037M22-          TAGGTTC---CCCTCTCACAGCAAAATCACTCTCAGTGTGATGACCTCCAATCTTGGTGA
JMFN039E09+           TAGGTTCCTTCCCTCTCACAGCAAAATCACTCTCAGTGTGATGACCTCCAATCTTGGTGA
JMSF023O02+           TAGGTTCCTTCCCTCTCACAGCAAAATCACTCTCAGTGTGATGACCTCCAATCTTGGTGA
JMSF037M22+           TAGGTTC---CCCTCTCACAGCAAAATCACTCTCAGTGTGATGACCTCCAATCTTGGTGA
rJMSF027J22-          TAGGTTCCTTCCCTCTCACAGCAAAATCACTCTCAGTGTGATGACCTCCAATCTTGGTGA
rJMSF023O02-          TAGGTTCCTTCCCTCTCACAGCAAAATCACTCTCAGTGTGATGACCTCCAATCTTGGTGA
JMSF027J22+           TAGGTTCCTTCCCTCTCACAGCAAAATCACTCTCAGTGTGATGACCTCCAATCTTGGTGA
                      ____________________________________________________________
consensus             TAGGTTCCTTCCCTCTCACAGCAAAATCACTCTCAGTGTGATGACCTCCAATCTTGGTGA
 
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rJMSF037M22-          AAACACGAAGCAACAGCGGGCATGTCTTCTCTCGATCGACGGGTTCGGACCGGGTGGCGG
JMFN039E09+           AAACACGAAGCAACAGCGGGCATGTCTTCTCTCGATCGACGGGTTCGGACCGGGTGGCGG
JMSF023O02+           AAACACGAAGCAACAGCGGGCATGTCTTCTCTCGATCGACGGGTTCGGACCGGGTGGCGG
JMSF037M22+           AAACACGAAGCAACAGCGGGCATGTCTTCTCTCGATCGACGGGTTCGGACCGGGTGGCGG
rJMSF027J22-          AAACACGAAGCAACAGCGGGCATGTCTTCTCTCGATCGACGGGTTCGGACCGGGTGGCGG
rJMSF023O02-          AAACACGAAGCAACAGCGGGCATGTCTTCTCTCGATCGACGGGTTCGGACCGGGTGGCGG
JMSF027J22+           AAACACGAAGCAACAGCGGGCATGTCTTCTCTCGATCGACGGGTTCGGACCGGGTGGCGG
                      ____________________________________________________________
consensus             AAACACGAAGCAACAGCGGGCATGTCTTCTCTCGATCGACGGGTTCGGACCGGGTGGCGG
 
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rJMSF037M22-          CCTTGGGCTGCACAGGACCAGGCGGGC--CTGGGCGGTGGTGGTTGCATCGGCCTTCTTC
JMFN039E09+           CCTTGGGCTGCACAGGACCAGGCGGGCCTCTGGGCGGTGGTGGTTGCATCGGCCTTCTTC
JMSF023O02+           CCTTGGGCTGCACAGGACCAGGCGGGCCTCTGGGCGGTGGTGGTTGCATCGGCCTTCTTC
JMSF037M22+           CCTTGGGCTGCACAGGACCAGGCGGGC--CTGGGCGGTGGTGGTTGCATCGGCCTTCTTC
rJMSF027J22-          CCTTGGGCTGCACAGGACCAGGCGGGCCTCTGGGCGGTGGTGGTTGCATCGGCCTTCTTC
rJMSF023O02-          CCTTGGGCTGCACAGGACCAGGCGGGCCTCTGGGCGGTGGTGGTTGCATCGGCCTTCTTC
JMSF027J22+           CCTTGGGCTGCACAGGACCAGGCGGGCCTCTGGGCGGTGGTGGTTGCATCGGCCTTCTTC
                      ____________________________________________________________
consensus             CCTTGGGCTGCACAGGACCAGGCGGGCCTCTGGGCGGTGGTGGTTGCATCGGCCTTCTTC
 
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rJMSF037M22-          TCTGAACTTCCGCCATTGCTCCCTCGCTGTCGAGCTCTCTCTCTCTCCCCGACAAAGGTC
JMFN039E09+           TCTGAACGTCCGCCATTGCTCCCTCGCTGTCGAGCTCTC                     
JMSF023O02+           TCTGAACTTCCGCCATTGCTCCCTCGCTGTCGAGCTCTCTCTCTCTCCCCGACAAAGGTC
JMSF037M22+           TCTGAACTTCCGCCATTGCTCCCTCGCTGTCGAGCTCTCTCTCTCTCCCCGACAAAGGTC
rJMSF027J22-          TCTGAACTTCCGCCATTGCTCCCTCGCTGTCGAGCTCTCTCTCTCTCCCCGACAAAGGTC
rJMSF023O02-          TCTGAACTTCCGCCATTGCTCCCTCGCTGTCGAGCTCTCTCTCTCTCCCCGACAAAGGTC
JMSF027J22+           TCTGAACTTCCGCCATTGCTCCCTCGCTGTCGAGCTCTCTCTCTCTCCCCGACAAAGGTC
                      ____________________________________________________________
consensus             TCTGAACTTCCGCCATTGCTCCCTCGCTGTCGAGCTCTCTCTCTCTCCCCGACAAAGGTC