Contig 003706:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008H22Sequence424003706 (4)gb|KDP38346.1|9e-12hypothetical protein JCGZ_04271 [Jatropha curcas]
JMFN017M17Sequence443003706 (4)gb|KDP38346.1|2e-18hypothetical protein JCGZ_04271 [Jatropha curcas]
JMSF026N13Sequence547003706 (4)gb|KDP38346.1|4e-18hypothetical protein JCGZ_04271 [Jatropha curcas]498003706 (4)gb|KDP38346.1|3e-18hypothetical protein JCGZ_04271 [Jatropha curcas]

Alignment

This contig is upended


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JMFN008H22+                                                  ACCTTACAAAAAGTTAATATT
JMSF026N13+                                                                TAATATT
                      ____________________________________________________________
consensus                                                    ACCTTACAAAAAGTTAATATT
 
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JMFN008H22+           GCCCCATTGAGGCTCGAACCATGACCTCTAGTCTTTAAAGAGCCACTCCGTGTCTCCGTG
rJMSF026N13-                                                           GTGTCTCCGTG
JMSF026N13+           GCCCCATTGAGGCTCGAACCATGACCTCTAGTCTTTAAAGAGCCACTCCGTGTCTCCGTG
                      ____________________________________________________________
consensus             GCCCCATTGAGGCTCGAACCATGACCTCTAGTCTTTAAAGAGCCACTCCGTGTCTCCGTG
 
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JMFN008H22+           CAACTAGACCACAAGGTCATTGGCAGATCAAAGACCTTTATTAGTTAAAATTTAATACAA
rJMSF026N13-          CAACTAGACCACAAGGTCATTGGCAGATCAAAGACCTTTATTAGTTAAAATTTAATACAA
JMFN017M17+                                GGCAGATCAAAGACCTTTATTAGTTAAAATTTAATACAA
JMSF026N13+           CAACTAGACCACAAGGTCATTGGCAGATCAAAGACCTTTATTAGTTAAAATTTAATACAA
                      ____________________________________________________________
consensus             CAACTAGACCACAAGGTCATTGGCAGATCAAAGACCTTTATTAGTTAAAATTTAATACAA
 
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JMFN008H22+           CTATAAGATATTGAACAACAAATTAAACAGCCTCCCAAAGATTATTGTAGAAGACAATTA
rJMSF026N13-          CTATAAGATATTGAACAACAAATTAAACAGCCTCCCAAAGATTATTGTAGAAGACAATTA
JMFN017M17+           CTATAAGATATTGAACAACAAATTAAACAGCCTCCCAAAGATTATTGTAGAAGACAATTA
JMSF026N13+           CTATAAGATATTGAACAACAAATTAAACAGCCTCCCAAAGATTATTGTAGAAGACAATTA
                      ____________________________________________________________
consensus             CTATAAGATATTGAACAACAAATTAAACAGCCTCCCAAAGATTATTGTAGAAGACAATTA
 
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JMFN008H22+           TTGTAGCAAACATTAATTTCACCCATCTCAGGGAGGGGCTTACTTATAGCTGAGGCTGTG
rJMSF026N13-          TTGTAGCAAACATTAATTTCACCCATCTCAGGGAGGGGCTTACTTATAGCTGAGGCTGTG
JMFN017M17+           TTGTAGCAAACATTAATTTCACCCATCTCAGGGAGGGGCTTACTTATAGCTGAGGCTGTG
JMSF026N13+           TTGTAGCAAACATTAATTTCACCCATCTCAGGGAGGGGCTTACTTATAGCTGAGGCTGTG
                      ____________________________________________________________
consensus             TTGTAGCAAACATTAATTTCACCCATCTCAGGGAGGGGCTTACTTATAGCTGAGGCTGTG
 
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JMFN008H22+           TGCATATTTTACGAGTCGACCCATCTCTTCCTCGTCGTCGATAAAACCATTACGGTTGGA
rJMSF026N13-          TGCATATTTTACGAGTCGACCCATCTCTTCCTCGTCGTCGATAAAACCATTACGGTTGGA
JMFN017M17+           TGCATATTTTACGAGTCGACCCATCTCTTCCTCGTCGTCGATAAAACCATTACGGTTGGA
JMSF026N13+           TGCATATTTTACGAGTCGACCCATCTCTTCCTCGTCGTCGATAAAACCATTACGGTTGGA
                      ____________________________________________________________
consensus             TGCATATTTTACGAGTCGACCCATCTCTTCCTCGTCGTCGATAAAACCATTACGGTTGGA
 
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JMFN008H22+           ATCTGCACGGCGGAGTGCTCGCCTAGCTCGCCACCCGGGCACCGCCGATCCTAACTCGGC
rJMSF026N13-          ATCTGCACGGCGGAGTGCTCGCCTAGCTCGCCACCCGGGCACCGCCGATCCTAACTCGGC
JMFN017M17+           ATCTGCACGGCGGAGTGCTCGCCTAGCTCGCCACCCGGGCACCGCCGATCCTAACTCGGC
JMSF026N13+           ATCTGCACGGCGGAGTGCTCGCCTAGCTCGCCACCCGGGCACCGCCGATCCTAACTCGGC
                      ____________________________________________________________
consensus             ATCTGCACGGCGGAGTGCTCGCCTAGCTCGCCACCCGGGCACCGCCGATCCTAACTCGGC
 
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JMFN008H22+           AAACGCTTTCTCGATCTCTTTCTTGCTAAGCGAAGCATCGCGA                 
rJMSF026N13-          AAACGCTTTCTCGATCTCTTTCTTGCTAAGCGAAGCATCGCGATTGCCGTCCTGGTTGCT
JMFN017M17+           AAACGCTTTCTCGATCTCTTTCTTGCTAAGCGAAGCATCGCGATTGCCGTCCTGGTTGCT
JMSF026N13+           AAACGCTTTCTCGATCTCTTTCTTGCTAAGCGAAGCATCGCGATTGCCGTCCTGGTTGCT
                      ____________________________________________________________
consensus             AAACGCTTTCTCGATCTCTTTCTTGCTAAGCGAAGCATCGCGATTGCCGTCCTGGTTGCT
 
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rJMSF026N13-          GAACAATTTCCTCAGTTGTTCCTCCGATGGAGGCTGGCAACATGGACACCTTACACTGCT
JMFN017M17+           GAACAATTTCCTCAGTTGTTCCTCCGATGGAGGCTGGCAACATGGACACCTTACACTGCT
JMSF026N13+           GAACAATTTCCTCAGTTGTTCCTCCGATGGAGGCTGGCAACATGGACACCTTACACTGCT
                      ____________________________________________________________
consensus             GAACAATTTCCTCAGTTGTTCCTCCGATGGAGGCTGGCAACATGGACACCTTACACTGCT
 
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rJMSF026N13-          GCTCCGACCAGCCATCAAAGATTTGAACAGTACAACGTTGTTTGTCTTAAGACCTCTATC
JMFN017M17+           GCTCCGACCAGCCATCAAAGATTTGAACAGTACAACGTTGTTTG                
JMSF026N13+           GCTCCGACCAGCCATCAAAGATTTGAACAGTACAACGTTGTTTGTCTTAAGACCTCTATC
                      ____________________________________________________________
consensus             GCTCCGACCAGCCATCAAAGATTTGAACAGTACAACGTTGTTTGTCTTAAGACCTCTATC