Contig 003705:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043N03Sequence638003705 (3)ref|XP_009765070.1|4e-100PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X2 [Nic660002677 (2)ref|XP_011095475.1|1e-23PREDICTED: transcription initiation factor TFIID subunit 6 [Sesamum indicum]
JMSF026M16Sequence671003705 (3)ref|XP_009765070.1|7e-108PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X2 [Nic670000235 (181)ref|XP_004170962.1|1e-145PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic-like
JMSF048D07Sequence715003705 (3)ref|XP_009765070.1|1e-90PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X2 [Nic761002677 (2)ref|XP_011095475.1|6e-63PREDICTED: transcription initiation factor TFIID subunit 6 [Sesamum indicum]

Alignment

This contig is upended


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JMSF048D07+              AAAGGATGAAGCCCAGAATCTGTTGCCAAACTCACAAGTGCTTCTTTCAAGAGTACA
JMSF026M16+                                                            TCAAGAGTACA
                      ____________________________________________________________
consensus                AAAGGATGAAGCCCAGAATCTGTTGCCAAACTCACAAGTGCTTCTTTCAAGAGTACA
 
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JMSF048D07+           GAGTTAGATCTATTCACTACCAAATCCGTAATTTTTTCATAGTATAACTGAAGTTCACGG
JMFF043N03+                                         ATTTTTTCATAGTATAACTGAAGTTCACGG
JMSF026M16+           GAGTTAGATCTATTCACTACCAAATCCGTAATTTTTTCATAGTATAACTGAAGTTCACGG
                      ____________________________________________________________
consensus             GAGTTAGATCTATTCACTACCAAATCCGTAATTTTTTCATAGTATAACTGAAGTTCACGG
 
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JMSF048D07+           GATAGTACATGCTTTACAGGTAACTTGAGGTCAACTGAACCTCCATCTTCTTTATAGTCC
JMFF043N03+           GATAGTACATGCTTACCAGGTAACTGNAGGTCAACTGAACCTCCATCTTCTTTATAGTCC
JMSF026M16+           GATAGTACATGCTTTACAGGTAACTTGAGGTCAACTGAACCTCCATCTTCTTTATAGTCC
                      ____________________________________________________________
consensus             GATAGTACATGCTTTACAGGTAACTTGAGGTCAACTGAACCTCCATCTTCTTTATAGTCC
 
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JMSF048D07+           ATCATTCTATTATCTTGTGGTGCTGCTAGTGCTTCATGAGGAGGATTTTCAGGAATAGAA
JMFF043N03+           ATCATTCTATTATCTTGTGGTGCTGCTAGTGCTTCATGAGGAGGATTTTCAGGAATAGAA
JMSF026M16+           ATCATTCTATTATCTTGTGGTGCTGCTAGTGCTTCATGAGGAGGATTTTCAGGAATAGAA
                      ____________________________________________________________
consensus             ATCATTCTATTATCTTGTGGTGCTGCTAGTGCTTCATGAGGAGGATTTTCAGGAATAGAA
 
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JMSF048D07+           GGCTGCACTCCTTCAACAGATAACCAATGAGATACTAATGCAGTATCTAATGGAGCTTTT
JMFF043N03+           GGCTGCACTCCTTCAACAGATAACCAATGAGATACTAATGCAGTATCTAATGGAGCTTTT
JMSF026M16+           GGCTGCACTCCTTCAACAGATAACCAATGAGATACTAATGCAGTATCTAATGGAGCTTTT
                      ____________________________________________________________
consensus             GGCTGCACTCCTTCAACAGATAACCAATGAGATACTAATGCAGTATCTAATGGAGCTTTT
 
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JMSF048D07+           GGTAGAGGAGCTTCAATCACATCCTTGAAGTCTAAATCCTTCTCTTCAATGTAGAACAAA
JMFF043N03+           GGTAGAGGAGCTTCAATCACATCCTTGAAGTCTAAATCCTTCTCTTCAATGTAGAACAAA
JMSF026M16+           GGTAGAGGAGCTTCAATCACATCCTTGAAGTCTAAATCCTTCTCTTCAATGTAGAACAAA
                      ____________________________________________________________
consensus             GGTAGAGGAGCTTCAATCACATCCTTGAAGTCTAAATCCTTCTCTTCAATGTAGAACAAA
 
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JMSF048D07+           TCCTTATGCCCCACAGCTC--TTGAACCGCATAGGATCTCCAGATGCAAATCCATATATT
JMFF043N03+           TCCTTATGCCCCACAGCTCTTTTGAACCGCATAGGATCTCCAGATGCAAATCCATATATT
JMSF026M16+           TCCTTATGCCCCACAGCTCTTTTGAACCGCATAGGATCTCCAGATGCAAATCCATATATT
                      ____________________________________________________________
consensus             TCCTTATGCCCCACAGCTCTTTTGAACCGCATAGGATCTCCAGATGCAAATCCATATATT
 
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JMSF048D07+           GGCTCAACATTTCGTATGCTGAGCGCTGCATCCACATCCTCGGCAGTTAAGATTGTCCTC
JMFF043N03+           GGCTCAACATTTCGTATGCTGAGCGCTGCATCCACATCCTCGGCAGTTAAGATTGTCCTC
JMSF026M16+           GGCTCAACATTTCGTATGCTGAGCGCTGCATCCACATCCTCGGCAGTTAAGATTGTCCTC
                      ____________________________________________________________
consensus             GGCTCAACATTTCGTATGCTGAGCGCTGCATCCACATCCTCGGCAGTTAAGATTGTCCTC
 
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JMSF048D07+           TTCGAATGTCTCGTGCATTTTATGGATTCCTGCATTATTTCTCGGAGACGGTATTCGACA
JMFF043N03+           TTCGAATGTCTCGTGCATTTTATGGATTCCTGCATTATTTCTCGGAGACGGTATTCGACA
JMSF026M16+           TTCGAATGTCTCGTGCATTTTATGGATTCCTGCATTATTTCTCGGAGACGGTATTCGACA
                      ____________________________________________________________
consensus             TTCGAATGTCTCGTGCATTTTATGGATTCCTGCATTATTTCTCGGAGACGGTATTCGACA
 
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JMSF048D07+           TCGGCTGCAAGTTCCGGCGACACTTCCGGGGACAAATTGCTGATTCCGATGCTCTGCGCT
JMFF043N03+           TCGGCTGCAAGTTCCGGCGACACTTCCGGGGACAAATTGCTGATTCCGATGCTCTGCGCT
JMSF026M16+           TCGGCTGCAAGTTCCGGCGACACTTCCGGGGACAAATTGCTGATTCCGATGCTCTGCGCT
                      ____________________________________________________________
consensus             TCGGCTGCAAGTTCCGGCGACACTTCCGGGGACAAATTGCTGATTCCGATGCTCTGCGCT
 
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JMSF048D07+           ATCACTTCTATTGTCTCTTTCGGCACTATGCTCATCTTTACACGGAAATTTTGCACTTTT
JMFF043N03+           ATCACTTCTATTGTCTCTTTCGGCACTATGCTCATCTTTACACGGAAATTTTGCACTTTT
JMSF026M16+           ATCACTTCTATTGTCTCTTTCGGCACTATGCTCATCTTTACACGGAAATTTTGCACTTTT
                      ____________________________________________________________
consensus             ATCACTTCTATTGTCTCTTTCGGCACTATGCTCATCTTTACACGGAAATTTTGCACTTTT
 
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JMSF048D07+           TTGGTTGATTTTTCTTTCTTTTTTCCGGTTGAAACTAGCGGAGAATGAATTGGAGCTT  
JMFF043N03+           TTGGTTGATTTTTCTTTCTTTTTTCCGGTTGAAACTAGCGGAGAATGAATTGGAGCTT  
JMSF026M16+           TTGGTTGATTTTTCTTTCTTTTTTCCGGTTGAAACTAGCGGAGAATGAATTGGAGCTTCC
                      ____________________________________________________________
consensus             TTGGTTGATTTTTCTTTCTTTTTTCCGGTTGAAACTAGCGGAGAATGAATTGGAGCTTCC