Contig 003701:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017B10Sequence558003701 (4)ref|XP_009790731.1|4e-99PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Nicotiana sylvestri811011334 (5)ref|XP_009799582.1|2e-134PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform X2 [Nicotiana syl
JMFF027P06Sequence457003701 (4)ref|XP_009790731.1|5e-76PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Nicotiana sylvestri795011334 (5)ref|XP_009799582.1|2e-130PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform X2 [Nicotiana syl
JMSF006M07Sequence278003701 (4)ref|XP_006356423.1|7e-33PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Solanum tuberosum]447002997 (3)
JMSF026D16Sequence695003701 (4)ref|XP_009790731.1|1e-128PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Nicotiana sylvestri776011334 (5)ref|XP_009799575.1|1e-85PREDICTED: ATP-citrate synthase alpha chain protein 2 isoform X1 [Nicotiana syl

Alignment

This contig is upended


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JMSF026D16+                                    TGTGAAAGGATTCATCTCAAGGAAACTGAAATCCA
                      ____________________________________________________________
consensus                                      TGTGAAAGGATTCATCTCAAGGAAACTGAAATCCA
 
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JMSF026D16+           AATCTAAAAATAGAGCATAAACAACTTTGATGAAGTCCTCAATCACAGTCTTGATCTCAA
                      ____________________________________________________________
consensus             AATCTAAAAATAGAGCATAAACAACTTTGATGAAGTCCTCAATCACAGTCTTGATCTCAA
 
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JMFF017B10+                                                    AAAGACACCCCCGTTGGAA
JMSF026D16+           GTGGAAGTGTTGCAACAAGTGGAGCGCACAGATCTGAGGTTAAAGACACCCCCGTTGGAA
                      ____________________________________________________________
consensus             GTGGAAGTGTTGCAACAAGTGGAGCGCACAGATCTGAGGTTAAAGACACCCCCGTTGGAA
 
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JMFF017B10+           CAAAAATGGTCTTAACCTTGTCCCAGTTCTCTTCGATTTCAATTCCTCCACATTCCGAAA
JMSF026D16+           CAAAAATGGTCTTAACCTTGTCCCAGTTCTCTTCGATTTCAATTCCTCCACATTCCGAAA
                      ____________________________________________________________
consensus             CAAAAATGGTCTTAACCTTGTCCCAGTTCTCTTCGATTTCAATTCCTCCACATTCCGAAA
 
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JMFF017B10+           AGCTTATGCTAGATCCAAGCCTCTCAGAGACGACGTTAAGGTAAAACTCCTCGTTGTGTG
JMFF027P06+                                 CTCAGAGACGACGTTAAGGTAAAACTCCTCGTTGTGTG
JMSF026D16+           AGCTTATGCTAGATCCAAGCCTCTCAGAGACGACGTTAAGGTAAAACTCCTCGTTGTGTG
                      ____________________________________________________________
consensus             AGCTTATGCTAGATCCAAGCCTCTCAGAGACGACGTTAAGGTAAAACTCCTCGTTGTGTG
 
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JMFF017B10+           GGACAAAGGGCTCAACAATGAAAGTTGTGATGGGACCTTTGCATCCACCCATCTCAACCT
JMFF027P06+           GGACAAAGGGCTCAACAATGAAAGTTGTGATGGGACCTTTGCATCCACCCATCTCAACCT
JMSF026D16+           GGACAAAGGGCTCAACAATGAAAGTTGTGATGGGACCTTTGCATCCACCCATCTCAACCT
                      ____________________________________________________________
consensus             GGACAAAGGGCTCAACAATGAAAGTTGTGATGGGACCTTTGCATCCACCCATCTCAACCT
 
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JMFF017B10+           CCTTGCCAAGCCTTTCCTTCACAAACGCAGCGACTTCAGCCAGATCTAGCTTCAAGGCAA
JMFF027P06+           CCTTGCCAAGCCTTTCCTTCACAAACGCAGCGACTTCAGCCAGATCTAGCTTCAAGGCAA
JMSF026D16+           CCTTGCCAAGCCTTTCCTTCACAAACGCAGCGACTTCAGCCAGATCTAGCTTCAAGGCAA
                      ____________________________________________________________
consensus             CCTTGCCAAGCCTTTCCTTCACAAACGCAGCGACTTCAGCCAGATCTAGCTTCAAGGCAA
 
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JMFF017B10+           CCAGACCGCTTTTCCCACGCTTGCCGAAGAGCATATCAGGCTTGACAACCAATTTTGTTG
JMFF027P06+           CCAGACCGCTTTTCCCACGCTTGCCGAAGAGCATATCAGGCTTGACAACCAATTTTGTTG
JMSF006M07+                                 GCCGAAGAGCATATCAGGCTTGACAACCAATTTTGTTG
JMSF026D16+           CCAGACCGCTTTTCCCACGCTTGCCGAAGAGCATATCAGGCTTGACAACCAATTTTGTTG
                      ____________________________________________________________
consensus             CCAGACCGCTTTTCCCACGCTTGCCGAAGAGCATATCAGGCTTGACAACCAATTTTGTTG
 
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JMFF017B10+           AGGAGAGCCAAGGCTCTTTGTCAACCAACTCATTGAGATCAGTCGATTCTGTAACTTGAG
JMFF027P06+           AGGAGAGCCAAGGCTCTTTGTCAACCAACTCATTGAGATCAGTCGATTCTGTAACTTGAG
JMSF006M07+           AGGAGAGCCAAGGCTCTTTGTCAACCAACTCATTGAGATCAGTCGATTCTGTAACTTGAG
JMSF026D16+           AGGAGAGCCAAGGCTCTTTGTCAACCAACTCATTGAGATCAGTCGATTCTGTAACTTGAG
                      ____________________________________________________________
consensus             AGGAGAGCCAAGGCTCTTTGTCAACCAACTCATTGAGATCAGTCGATTCTGTAACTTGAG
 
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JMFF017B10+           CAGATTTGATGGCCAAATCATAGCCACCGAGCCTCTTGAAATGCTCCTTCAACAGCCTCT
JMFF027P06+           CAGATTTGATGGCCAAATCATAGCCACCGAGCCTCTTGAAATGCTCCTTCAACAGCCTCT
JMSF006M07+           CAGATTTGATGGCCAAATCATAGCCACCGAGCCTCTTGAAATGCTCCTTCAACAGCCTCT
JMSF026D16+           CAGATTTGATGGCCAAATCATAGCCACCGAGCCTCTTGAAATGCTCCTTCAACAGCCTCT
                      ____________________________________________________________
consensus             CAGATTTGATGGCCAAATCATAGCCACCGAGCCTCTTGAAATGCTCCTTCAACAGCCTCT
 
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JMFF017B10+           TGGAATCATACTCTCTGATCTTCTTGCGTGCCATTTCTCCTCACCTTAAAAAGCTGAGAC
JMFF027P06+           TGGAATCATACTCTCTGATCTTCTTGCGTGCCATTTCTCCTCACCTTAAAAAGCTGAGAC
JMSF006M07+           TGGAATCATACTCTCTGATCTTCTTGCGTGCCATTTCTCCTCACCTTAAAAAGCTGAGAC
JMSF026D16+           TGGAATCATACTCTCTGATCTTCTTGCGTGCCATTTCTCCTCACCTTAAAAAGCTGAGAC
                      ____________________________________________________________
consensus             TGGAATCATACTCTCTGATCTTCTTGCGTGCCATTTCTCCTCACCTTAAAAAGCTGAGAC
 
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JMFF017B10+           CGGAAGGGATGTAAGAAGAATTTAAGCAGTGCGGAGATTTGGTTGCAAGAAGGGTGGCT 
JMFF027P06+           CGGAAGGGATGTAAGAAGAATTTAAGCAGTGCGGAGATTTGGTTGCAAGAAGGGTGGCT 
JMSF006M07+           CGGAAGGGATGTAAGAAGAATTTAAGCAGTGCGGAGATTTGGTTGCAAGAAGGGTGGCT 
JMSF026D16+           CGGAAGGGATGTAAGAAGAATTTAAGCAGTGCGGAGATTTGGTTGCAAGAAGGGTGGCTC
                      ____________________________________________________________
consensus             CGGAAGGGATGTAAGAAGAATTTAAGCAGTGCGGAGATTTGGTTGCAAGAAGGGTGGCTC