Contig 003691:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051P10Sequence561003691 (3)ref|XP_009762737.1|1e-08PREDICTED: MACPF domain-containing protein CAD1-like [Nicotiana sylvestris]457009872 (2)
JMFS023F05Sequence540003691 (3)emb|CBI18046.3|4e-23unnamed protein product [Vitis vinifera]
JMSF025F05Sequence658003691 (3)674009872 (2)ref|XP_009607403.1|1e-99PREDICTED: MACPF domain-containing protein CAD1-like [Nicotiana tomentosiformis

Alignment

This contig is upended


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JMSF025F05+             CNNGNGNCNNNNGGCNNCNNNNNNTCNCCNNNCNAGCAANGTCNNNNGNGNGNTNTTN
                      ____________________________________________________________
consensus               CNNGNGNCNNNNGGCNNCNNNNNNTCNCCNNNCNAGCAANGTCNNNNGNGNGNTNTTN
 
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JMSF025F05+           NNNANTNTNNNCANNNNNNGNNCCAGNCNNTNCNNNNCAGTAAAGCAATNNNGTNTCNTA
                      ____________________________________________________________
consensus             NNNANTNTNNNCANNNNNNGNNCCAGNCNNTNCNNNNCAGTAAAGCAATNNNGTNTCNTA
 
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JMFF051P10+                                                     GGCAGTATGCAAAGCCGC
JMFS023F05+                                                     GGCAGTATGCAAAGCCGC
JMSF025F05+           ATTCNCATCAAAACCCNTTNNCAANGCNTGCNNNGCATNTANGGCAGTANGCAAAGCCGN
                      ____________________________________________________________
consensus             ATTCNCATCAAAACCCNTTNNCAANGCNTGCNNNGCATNTANGGCAGTATGCAAAGCCGC
 
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JMFF051P10+           TTCCTTTTCCTCCATATCATCACCTCCCCCACCCAGCCCCAAACCCCAGTGCCCAAAAAA
JMFS023F05+           TTCCTTTTCCTCCATATCATCACCTCCCCCACCCAGCCCCAAACCCCAGTGCCCAAAAAA
JMSF025F05+           TTCCTTTTCCTCCATATCATCACCTCCCCCACCCAGCCCCAAACCCCAGTGCCCAAAAAA
                      ____________________________________________________________
consensus             TTCCTTTTCCTCCATATCATCACCTCCCCCACCCAGCCCCAAACCCCAGTGCCCAAAAAA
 
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JMFF051P10+           TTAAACAAAAATTCCTCCTTATTCTTTAATTACAAATGCCAAGCAGAAATCCAATTCCAA
JMFS023F05+           TTAAACAAAAATTCCTCCTTATTCTTTAATTACAAATGCCAAGCAGAAATCCAATTCCAA
JMSF025F05+           TTAAACAAAAATTCCTCCTTATTCTTTAATTACAAATGCCAAGCAGAAATCCAATTCCAA
                      ____________________________________________________________
consensus             TTAAACAAAAATTCCTCCTTATTCTTTAATTACAAATGCCAAGCAGAAATCCAATTCCAA
 
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JMFF051P10+           GCAAAGAGCAATCACCACATAGCAAATATATTCAGATAAACTTAACCCAAATCAAACGCT
JMFS023F05+           GCAAAGAGCAATCACCACATAGCAAATATATTCAGATAAACTTAACCCAAATCAAACGCT
JMSF025F05+           GCAAAGAGCAATCACCACATAGCAAATATATTCAGATAAACTTAACCCAAATCAAACGCT
                      ____________________________________________________________
consensus             GCAAAGAGCAATCACCACATAGCAAATATATTCAGATAAACTTAACCCAAATCAAACGCT
 
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JMFF051P10+           AACCCTATCTTGCTCTACCACAATACTTTTACCAAATCAAGAGTAAAGATTCAATCTTTT
JMFS023F05+           AACCCTATCTTGCTCTACCACAATACTTTTACCAAATCAAGAGTAAAGATTCAATCTTTT
JMSF025F05+           AACCCTATCTTGCTCTACCACAATACTTTTACCAAATCAAGAGTAAAGATTCAATCTTTT
                      ____________________________________________________________
consensus             AACCCTATCTTGCTCTACCACAATACTTTTACCAAATCAAGAGTAAAGATTCAATCTTTT
 
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JMFF051P10+           TCAGATCAGATAACCCCCAAAGCTACAAATTCCATTACCCTAATCTCAAAACTCTCTAAA
JMFS023F05+           TCAGATCAGATAACCCCCAAAGCTACAAATTCCATTACCCTAATCTCAAAACTCTCTAAA
JMSF025F05+           TCAGATCAGATAACCCCCAAAGCTACAAATTCCATTACCCTAATCTCAAAACTCTCTAAA
                      ____________________________________________________________
consensus             TCAGATCAGATAACCCCCAAAGCTACAAATTCCATTACCCTAATCTCAAAACTCTCTAAA
 
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JMFF051P10+           GGTTGACCATAAGAAATTACCCAGAAAGATTTGAACCGATACTTCAGCTAAGAA-AGATC
JMFS023F05+           GGTTGACCATAAGAAATTACCCAG-AAGATTTGAACCGATACTTCAGCTAAGAACAGATC
JMSF025F05+           GGTTGACCATAAGAAATTACCCAGAAAGATTTGAACCGATACTTCAGCTAAGAACAGATC
                      ____________________________________________________________
consensus             GGTTGACCATAAGAAATTACCCAGAAAGATTTGAACCGATACTTCAGCTAAGAACAGATC
 
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JMFF051P10+           TTGAATCTTCCAACTCAGAACTTCAGATTTCCTATCTCCTTTCCCCCTCTCTCTCTATAT
JMFS023F05+           TTGAATCTTCCAACTCAGAACTTCAGATTTCCTA                          
JMSF025F05+           TTGAATCTTCCAACTCAGAACTTCAGATTTCCTATCTCCTTTCCCCCTCTCTCTCTATAT
                      ____________________________________________________________
consensus             TTGAATCTTCCAACTCAGAACTTCAGATTTCCTATCTCCTTTCCCCCTCTCTCTCTATAT
 
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JMFF051P10+           ATATATCTATCTACAATCTATACATGTGTATATCTGATGCCTCTCCTCTCCCTCCCCCC 
JMSF025F05+           ATATATCTATCTACAATCTATACATGTGTATATCTGATGCCTCTCCTCTCCCTCCCCCCT
                      ____________________________________________________________
consensus             ATATATCTATCTACAATCTATACATGTGTATATCTGATGCCTCTCCTCTCCCTCCCCCCT