Contig 003688:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003M18Sequence342003688 (2)ref|XP_009767923.1|7e-45PREDICTED: putative G3BP-like protein isoform X1 [Nicotiana sylvestris]249007357 (18)ref|XP_004249419.1|1e-05PREDICTED: 40S ribosomal protein S17-like [Solanum lycopersicum] ref|XP_00633915
JMSF024N21Sequence686003688 (2)emb|CDO99318.1|8e-87unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF024N21+                                             TGGAGAAATCCAGGCTAGCAAATTTG
                      ____________________________________________________________
consensus                                               TGGAGAAATCCAGGCTAGCAAATTTG
 
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JMSF024N21+           TACCTCCCACAAAGATCAAAGAAAATGGAAAAGCCAATAACTATAACTTCACCGAGGAGC
                      ____________________________________________________________
consensus             TACCTCCCACAAAGATCAAAGAAAATGGAAAAGCCAATAACTATAACTTCACCGAGGAGC
 
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JMSF024N21+           ATCTTCAGCAGGTCCCTGAATCTGATAGGATCCACAACGATAACTTTACAGAGCAATCCA
                      ____________________________________________________________
consensus             ATCTTCAGCAGGTCCCTGAATCTGATAGGATCCACAACGATAACTTTACAGAGCAATCCA
 
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JMSF024N21+           ATGGTCCACTTCCAAGTAAAATGGACACTGTACAAGACCAATTACATGCTCCTATCGAGG
                      ____________________________________________________________
consensus             ATGGTCCACTTCCAAGTAAAATGGACACTGTACAAGACCAATTACATGCTCCTATCGAGG
 
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JMSF024N21+           AACCGGTTTCAGAGACTCAGAAACATACTTATGCTTCTATTGTTGCAAAAAGACAACCTG
                      ____________________________________________________________
consensus             AACCGGTTTCAGAGACTCAGAAACATACTTATGCTTCTATTGTTGCAAAAAGACAACCTG
 
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JMSF024N21+           TGCAAGCGGTAGCCCCACAGTCTTCTTTTAACAAAGCTGCTGATCATTCGGAGTGGCAAG
                      ____________________________________________________________
consensus             TGCAAGCGGTAGCCCCACAGTCTTCTTTTAACAAAGCTGCTGATCATTCGGAGTGGCAAG
 
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JMSF003M18+                                     CCATCAGCACCTTCTAATAATGTTGAAAAGTCTG
JMSF024N21+           GTACACCAGAACCTACTGGTCAGCCGCCATCAGCACCTTCTAATAATGTTGAAAAGTCTG
                      ____________________________________________________________
consensus             GTACACCAGAACCTACTGGTCAGCCGCCATCAGCACCTTCTAATAATGTTGAAAAGTCTG
 
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JMSF003M18+           GAGCAGAAGTAGAAGAAGAGTTTTCTGCTCTGGAAGATGAATTCGAAGTGAAGTCAGTGT
JMSF024N21+           GAGCAGAAGTAGAAGAAGAGTTTTCTGCTCTGGAAGATGAATTCGAAGTGAAGTCAGTGT
                      ____________________________________________________________
consensus             GAGCAGAAGTAGAAGAAGAGTTTTCTGCTCTGGAAGATGAATTCGAAGTGAAGTCAGTGT
 
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JMSF003M18+           ATGTGAGAAATTTACCAACAACAATGGATCCTTATGAAATTGAAGAGGAGTTTAAAAAAT
JMSF024N21+           ATGTGAGAAATTTACCAACAACAATGGATCCTTATGAAATTGAAGAGGAGTTTAAAAAAT
                      ____________________________________________________________
consensus             ATGTGAGAAATTTACCAACAACAATGGATCCTTATGAAATTGAAGAGGAGTTTAAAAAAT
 
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JMSF003M18+           TTGGTAAACTGAAGCCTGATGGTGTCGCTATTAGAACACGGAAGGATATTGATGTGTGCT
JMSF024N21+           TTGGTAAACTGAAGCCTGATGGTGTCGCTATTAGAACACGGAAGGATATTGATGTGTGCT
                      ____________________________________________________________
consensus             TTGGTAAACTGAAGCCTGATGGTGTCGCTATTAGAACACGGAAGGATATTGATGTGTGCT
 
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JMSF003M18+           ATGCATTTGTTGAATTTGAAGATGTAACAAGTGTACAGAATGCAATCAAGGCTTCTACTG
JMSF024N21+           ATGCATTTGTTGAATTTGAAGATGTAACAAGTGTACAGAATGCAATCAAGGCTTCTACTG
                      ____________________________________________________________
consensus             ATGCATTTGTTGAATTTGAAGATGTAACAAGTGTACAGAATGCAATCAAGGCTTCTACTG
 
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JMSF003M18+           TACAGATTGGTGGACACCAGCTATATATTGAAGGGAGAAGACCAAACAGAAA        
JMSF024N21+           TACAGATTGGTGGACACCAGCTATATATTGAAGGGAGAAGACCAAACAGAAATAGCTTTT
                      ____________________________________________________________
consensus             TACAGATTGGTGGACACCAGCTATATATTGAAGGGAGAAGACCAAACAGAAATAGCTTTT