| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001M11 | Sequence | 217 | 003686 (5) | ||||||||
| JMSF013B23 | Sequence | 222 | 003686 (5) | 719 | 004339 (4) | emb|CDX97868.1| | 7e-39 | BnaC04g40710D [Brassica napus] | |||
| JMSF024J08 | Sequence | 696 | 003686 (5) | ref|XP_010650926.1| | 123 | PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera] | 747 | 004339 (4) | emb|CDX97868.1| | 3e-45 | BnaC04g40710D [Brassica napus] |
| JMSF026G16 | Sequence | 623 | 003686 (5) | ref|XP_010650926.1| | 117 | PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera] | 803 | 004339 (4) | emb|CDX97868.1| | 1e-50 | BnaC04g40710D [Brassica napus] |
| JMSF039H19 | Sequence | 689 | 003686 (5) | ref|XP_010650926.1| | 122 | PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera] | 842 | 004339 (4) | emb|CDY02002.1| | 3e-44 | BnaC04g14990D [Brassica napus] |
This contig is upended
. : . : . : . : . : . :
JMSF039H19+ CATGCCACCATTAGTACACTCATCACTGNTCCGG
JMSF024J08+ AACATGCCACCATTAGTACACTCATCANTGCTCCGG
____________________________________________________________
consensus AACATGCCACCATTAGTACACTCATCACTGCTCCGG
. : . : . : . : . : . :
JMSF039H19+ CACGCTGCTTCACTGGAACCGGTCACGAATTCTTCTTCCTCACCATCGCTAGAGCTTGAA
JMSF026G16+ TCCTCACCATCGCTAGAGCTTGAA
JMSF024J08+ CACGCTGCTTCACTGGAACCGGTCACGAATTCTTCTTCCTCACCATCGCTAGAGCTTGAA
____________________________________________________________
consensus CACGCTGCTTCACTGGAACCGGTCACGAATTCTTCTTCCTCACCATCGCTAGAGCTTGAA
. : . : . : . : . : . :
JMSF039H19+ TTTAAGGTTTCTTCATCATCCCATCGCTGGAAACTCAAAGCCAACTCTTCAATTCTCCTA
JMSF026G16+ TTTAAGGTTTCTTCATCATCCCATCGCTGGAAACTCAAAGCCAACTCTTCAATTCTCCTA
JMSF024J08+ TTTAAGGTTTCTTCATCATCCCATCGCTGGAAACTCAAAGCCAACTCTTCAATTCTCCTA
____________________________________________________________
consensus TTTAAGGTTTCTTCATCATCCCATCGCTGGAAACTCAAAGCCAACTCTTCAATTCTCCTA
. : . : . : . : . : . :
JMSF039H19+ GTAAACTCCTCGTCCGAGAAAGAATCTTCTAGGCTGGCACTGCAAGCACGTCTTATGGTG
JMSF026G16+ GTAAACTCCTCGTCCGAGAAAGAATCTTCTAGGCTGGCACTGCAAGCACGTCTTATGGTG
JMSF024J08+ GTAAACTCCTCGTCCGAGAAAGAATCTTCTAGGCTGGCACTGCAAGCACGTCTTATGGTG
____________________________________________________________
consensus GTAAACTCCTCGTCCGAGAAAGAATCTTCTAGGCTGGCACTGCAAGCACGTCTTATGGTG
. : . : . : . : . : . :
JMSF039H19+ GTTTGTGCGGGGGGCTTGAGAAACTCGCAGGATCGGGACCGGGAGAGCTTCGTCGTCGTC
JMSF026G16+ GTTTGTGCGGGGGGCTTGAGAAACTCGCAGGATCGGGACCGGGAGAGCTTCGTCGTCGTC
JMSF024J08+ GTTTGTGCGGGGGGCTTGAGAAACTCGCAGGATCGGGACCGGGAGAGCTTCGTCGTCGTC
____________________________________________________________
consensus GTTTGTGCGGGGGGCTTGAGAAACTCGCAGGATCGGGACCGGGAGAGCTTCGTCGTCGTC
. : . : . : . : . : . :
JMSF039H19+ GGCGGGGCTCCGAGAAACGCCGATCTTTCCAACCTGTGCACGAACCGGCAAACCACAGAT
JMSF026G16+ GGCGGGGCTCCGAGAAACGCCGATCTTTCCAACCTGTGCACGAACCGGCAAACCACAGAT
JMSF024J08+ GGCGGGGCTCCGAGAAACGCCGATCTTTCCAACCTGTGCACGAACCGGCAAACCACAGAT
____________________________________________________________
consensus GGCGGGGCTCCGAGAAACGCCGATCTTTCCAACCTGTGCACGAACCGGCAAACCACAGAT
. : . : . : . : . : . :
JMSF039H19+ CTTTCGCCGCTCACAAAACCGCGTCGTTTCGGGAGAGATGAAATCATTGCGGCATGGACG
JMSF026G16+ CTTTCGCCGCTCACAAAACCGCGTCGTTTCGGGAGAGATGAAATCATTGCGGCATGGACG
JMSF024J08+ CTTTCGCCGCTCACAAAACCGCGTCGTTTCGGGAGAGATGAAATCATTGCGGCATGGACG
____________________________________________________________
consensus CTTTCGCCGCTCACAAAACCGCGTCGTTTCGGGAGAGATGAAATCATTGCGGCATGGACG
. : . : . : . : . : . :
JMSF039H19+ TGAGGATGAGGCGGCGAGTGTGGAACTGAATGTTGCGACCAATGCAAACACGTCGTCGCA
JMSF026G16+ TGAGGATGAGGCGGCGAGTGTGGAACTGAATGTTGCGACCAATGCAAACACGTCGTCGCA
JMSF024J08+ TGAGGATGAGGCGGCGAGTGTGGAACTGAATGTTGCGACCAATGCAAACACGTCGTCGCA
____________________________________________________________
consensus TGAGGATGAGGCGGCGAGTGTGGAACTGAATGTTGCGACCAATGCAAACACGTCGTCGCA
. : . : . : . : . : . :
JMSF039H19+ ACTTTTACCCCCATTTTCCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
JMSF026G16+ ACTTTTACCCCCATTTTCCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
JMSF013B23+ CCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
JMSF001M11+ CGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
JMSF024J08+ ACTTTTACCCCCATTTTCCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
____________________________________________________________
consensus ACTTTTACCCCCATTTTCCTCACCGGAACAACGAGATTCGATCTAACCTCGCAGAAATAC
. : . : . : . : . : . :
JMSF039H19+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
JMSF026G16+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
JMSF013B23+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
JMSF001M11+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
JMSF024J08+ TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
____________________________________________________________
consensus TAACTCAGATTGATTCACAAACACAAAGCCTCTCACCTTTCTTCCTCTTAACTCAATTCA
. : . : . : . : . : . :
JMSF039H19+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
JMSF026G16+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
JMSF013B23+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
JMSF001M11+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
JMSF024J08+ GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
____________________________________________________________
consensus GAACGTGGCCGTAGTTCCGGACAGTTTTCCGACGATTCAGGGCGGTTAAGTCGTCGCCGG
. : . : . : . : . : . :
JMSF039H19+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAA
JMSF026G16+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCC
JMSF013B23+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCC
JMSF001M11+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCC
JMSF024J08+ AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCCC
____________________________________________________________
consensus AGAATACTTTTCTCCGAAAGCGAAGCACGAGCACACCAGCTTCACTAAATCAACACTCCC