Contig 003685:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022N18Sequence677003685 (6)dbj|BAB41076.1|5e-118MAR-binding protein [Nicotiana tabacum]758011413 (5)gb|KDO50622.1|1e-151hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|
JMSF024I22Sequence652003685 (6)dbj|BAB41076.1|2e-104MAR-binding protein [Nicotiana tabacum]729011413 (5)ref|XP_007208461.1|1e-26hypothetical protein PRUPE_ppa003941mg [Prunus persica] gb|EMJ09660.1| hypotheti
JMSF031E06Sequence651003685 (6)dbj|BAB41076.1|6e-115MAR-binding protein [Nicotiana tabacum]772011413 (5)gb|KDO50622.1|3e-149hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|
JMSF034A17Sequence691003685 (6)dbj|BAB41076.1|6e-125MAR-binding protein [Nicotiana tabacum]718011413 (5)ref|XP_008218165.1|5e-24PREDICTED: probable nucleolar protein 5-2 [Prunus mume]
JMSF044N19Sequence786003685 (6)dbj|BAB41076.1|3e-149MAR-binding protein [Nicotiana tabacum]729011413 (5)gb|KDO50622.1|9e-25hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|
JMSF050C21Sequence665003685 (6)dbj|BAB41076.1|1e-127MAR-binding protein [Nicotiana tabacum]673012953 (6)ref|XP_009774502.1|301PREDICTED: uncharacterized protein LOC104224520 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044N19+ TCAGGTAGTATCTCAGAAAAATCAAGCTTTGCAGCATTTGTACGG
                      ____________________________________________________________
consensus TCAGGTAGTATCTCAGAAAAATCAAGCTTTGCAGCATTTGTACGG
 
. : . : . : . : . : . :
JMSF044N19+ TCACCCATCAACTTCACTGTTTTGGCATACTGAATATTGTCTTGTACAATCTTTGCAAGC
                      ____________________________________________________________
consensus TCACCCATCAACTTCACTGTTTTGGCATACTGAATATTGTCTTGTACAATCTTTGCAAGC
 
. : . : . : . : . : . :
JMSF050C21+ GGGAAATGCCAACCATACCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
JMSF044N19+ TCAGGGAAATGCCAACCATACCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
JMSF022N18+ CCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
JMSF031E06+ AACTCTCATTGCATAAGTGTTTAGCTCCTTA
JMSF034A17+ GGGAAATGCCAACCATACCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
                      ____________________________________________________________
consensus TCAGGGAAATGCCAACCATACCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
 
. : . : . : . : . : . :
JMSF050C21+ TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF044N19+ TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF022N18+ TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF031E06+ TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF034A17+ TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF024I22+ CATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
                      ____________________________________________________________
consensus TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
 
. : . : . : . : . : . :
JMSF050C21+ AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF044N19+ AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF022N18+ AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF031E06+ AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF034A17+ AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF024I22+ AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
                      ____________________________________________________________
consensus AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
 
. : . : . : . : . : . :
JMSF050C21+ TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF044N19+ TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF022N18+ TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF031E06+ TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF034A17+ TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF024I22+ TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
                      ____________________________________________________________
consensus TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
 
. : . : . : . : . : . :
JMSF050C21+ ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF044N19+ ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF022N18+ ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF031E06+ ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF034A17+ ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF024I22+ ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
                      ____________________________________________________________
consensus ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
 
. : . : . : . : . : . :
JMSF050C21+ TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF044N19+ TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF022N18+ TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF031E06+ TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF034A17+ TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF024I22+ TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
                      ____________________________________________________________
consensus TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
 
. : . : . : . : . : . :
JMSF050C21+ CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF044N19+ CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF022N18+ CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF031E06+ CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF034A17+ CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF024I22+ CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
                      ____________________________________________________________
consensus CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
 
. : . : . : . : . : . :
JMSF050C21+ TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF044N19+ TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF022N18+ TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF031E06+ TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF034A17+ TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF024I22+ TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
                      ____________________________________________________________
consensus TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
 
. : . : . : . : . : . :
JMSF050C21+ TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF044N19+ TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF022N18+ TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF031E06+ TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF034A17+ TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF024I22+ TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
                      ____________________________________________________________
consensus TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
 
. : . : . : . : . : . :
JMSF050C21+ AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF044N19+ AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF022N18+ AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF031E06+ AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF034A17+ AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF024I22+ AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
                      ____________________________________________________________
consensus AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
 
. : . : . : . : . : . :
JMSF050C21+ AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGC
JMSF044N19+ AGCAGCCAAANCGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
JMSF022N18+ AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
JMSF031E06+ AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
JMSF034A17+ AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
JMSF024I22+ AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
                      ____________________________________________________________
consensus AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
 
. : . : . : . : . : . :
JMSF044N19+ AAGCTTTTAGGCTTTTAAAC
JMSF022N18+ AAGCTTTTAGGCTTTTA
JMSF031E06+ AAGCTTTTAGGCTTTTAAAC
JMSF034A17+ AAGCTTTTAGGCTTTTAAAC
JMSF024I22+ AAGCTTTTAGGCTTTTAAACAGCGATGGGTTTTGGGATTCTAGGGTTTTACCAATCCGCC
                      ____________________________________________________________
consensus AAGCTTTTAGGCTTTTAAACAGCGATGGGTTTTGGGATTCTAGGGTTTTACCAATCCGCC