Contig 003685:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022N18Sequence677003685 (6)dbj|BAB41076.1|5e-118MAR-binding protein [Nicotiana tabacum]758011413 (5)gb|KDO50622.1|1e-151hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|
JMSF024I22Sequence652003685 (6)dbj|BAB41076.1|2e-104MAR-binding protein [Nicotiana tabacum]729011413 (5)ref|XP_007208461.1|1e-26hypothetical protein PRUPE_ppa003941mg [Prunus persica] gb|EMJ09660.1| hypotheti
JMSF031E06Sequence651003685 (6)dbj|BAB41076.1|6e-115MAR-binding protein [Nicotiana tabacum]772011413 (5)gb|KDO50622.1|3e-149hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|
JMSF034A17Sequence691003685 (6)dbj|BAB41076.1|6e-125MAR-binding protein [Nicotiana tabacum]718011413 (5)ref|XP_008218165.1|5e-24PREDICTED: probable nucleolar protein 5-2 [Prunus mume]
JMSF044N19Sequence786003685 (6)dbj|BAB41076.1|3e-149MAR-binding protein [Nicotiana tabacum]729011413 (5)gb|KDO50622.1|9e-25hypothetical protein CISIN_1g0088521mg, partial [Citrus sinensis] gb|KDO50623.1|
JMSF050C21Sequence665003685 (6)dbj|BAB41076.1|1e-127MAR-binding protein [Nicotiana tabacum]673012953 (6)ref|XP_009774502.1|301PREDICTED: uncharacterized protein LOC104224520 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF044N19+                          TCAGGTAGTATCTCAGAAAAATCAAGCTTTGCAGCATTTGTACGG
                      ____________________________________________________________
consensus                            TCAGGTAGTATCTCAGAAAAATCAAGCTTTGCAGCATTTGTACGG
 
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JMSF044N19+           TCACCCATCAACTTCACTGTTTTGGCATACTGAATATTGTCTTGTACAATCTTTGCAAGC
                      ____________________________________________________________
consensus             TCACCCATCAACTTCACTGTTTTGGCATACTGAATATTGTCTTGTACAATCTTTGCAAGC
 
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JMSF050C21+              GGGAAATGCCAACCATACCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
JMSF044N19+           TCAGGGAAATGCCAACCATACCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
JMSF022N18+                               CCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
JMSF031E06+                                        AACTCTCATTGCATAAGTGTTTAGCTCCTTA
JMSF034A17+              GGGAAATGCCAACCATACCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
                      ____________________________________________________________
consensus             TCAGGGAAATGCCAACCATACCACTCTCGAACTCTCATTGCATAAGTGTTTAGCTCCTTA
 
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JMSF050C21+           TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF044N19+           TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF022N18+           TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF031E06+           TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF034A17+           TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
JMSF024I22+                  CATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
                      ____________________________________________________________
consensus             TCAAGATCATCCAACAAGCTGATGGCCTGGACAATCATTGTGTCCACCTTGTCAGGGCTA
 
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JMSF050C21+           AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF044N19+           AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF022N18+           AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF031E06+           AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF034A17+           AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
JMSF024I22+           AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
                      ____________________________________________________________
consensus             AATTTCAGCTTGTATCTTGAAAGGCTGTGAGATAAACCCAAGCTCATTGGAGCCAAATCT
 
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JMSF050C21+           TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF044N19+           TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF022N18+           TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF031E06+           TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF034A17+           TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
JMSF024I22+           TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
                      ____________________________________________________________
consensus             TGAACACCTAGACCAGTTATCAGCTCAGTTAACTGATTCCTCAATCCTCTCATCAATTCC
 
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JMSF050C21+           ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF044N19+           ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF022N18+           ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF031E06+           ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF034A17+           ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
JMSF024I22+           ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
                      ____________________________________________________________
consensus             ATGACTGTGCTGTTGTGCACACAGTCAATTTGCAGTTTCTCCTTAATTGCATTTCCAAGC
 
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JMSF050C21+           TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF044N19+           TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF022N18+           TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF031E06+           TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF034A17+           TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
JMSF024I22+           TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
                      ____________________________________________________________
consensus             TTCGAATCAGCTACAGCCAGAGTATCACCATCACAATGAGAGCGTAAAAACTTGCGCAGC
 
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JMSF050C21+           CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF044N19+           CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF022N18+           CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF031E06+           CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF034A17+           CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
JMSF024I22+           CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
                      ____________________________________________________________
consensus             CCTTTGCTTGGCTTACTATCAATCAACAAAGTAGCTGCTGACAATGCTTCCGATGTATTT
 
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JMSF050C21+           TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF044N19+           TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF022N18+           TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF031E06+           TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF034A17+           TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
JMSF024I22+           TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
                      ____________________________________________________________
consensus             TCGAACTTAGAGAAGGCTTTTAGCTTCACAACCTTGCGAGCGGTGTCAGCTGTGGAGAAC
 
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JMSF050C21+           TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF044N19+           TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF022N18+           TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF031E06+           TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF034A17+           TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
JMSF024I22+           TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
                      ____________________________________________________________
consensus             TCCTTCCATAAATCCTCGACTTTGGAGAGCTTGCCCTCATCCAATACCTTGAAAAGGGCA
 
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JMSF050C21+           AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF044N19+           AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF022N18+           AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF031E06+           AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF034A17+           AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
JMSF024I22+           AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
                      ____________________________________________________________
consensus             AAGCCCGCTGGCGTCTCAAACAGAACCAGCATTTCCTCGGCTTAACGATGGTCGATACCT
 
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JMSF050C21+           AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGC            
JMSF044N19+           AGCAGCCAAANCGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
JMSF022N18+           AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
JMSF031E06+           AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
JMSF034A17+           AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
JMSF024I22+           AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
                      ____________________________________________________________
consensus             AGCAGCCAAA-CGGTGTGGTGGAGATGAGTTAGGGTTTTAGCAGCTGCAGGGAAGGGGAG
 
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JMSF044N19+           AAGCTTTTAGGCTTTTAAAC                                        
JMSF022N18+           AAGCTTTTAGGCTTTTA                                           
JMSF031E06+           AAGCTTTTAGGCTTTTAAAC                                        
JMSF034A17+           AAGCTTTTAGGCTTTTAAAC                                        
JMSF024I22+           AAGCTTTTAGGCTTTTAAACAGCGATGGGTTTTGGGATTCTAGGGTTTTACCAATCCGCC
                      ____________________________________________________________
consensus             AAGCTTTTAGGCTTTTAAACAGCGATGGGTTTTGGGATTCTAGGGTTTTACCAATCCGCC