Contig 003682:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036N23Sequence595003682 (4)ref|XP_009777634.1|1e-61PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo572012792 (7)ref|XP_004232589.1|1e-43PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola
JMSF003A01Sequence300003682 (4)ref|XP_009777634.1|4e-13PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo763024444ref|XP_004232589.1|2e-44PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola
JMSF024F21Sequence645003682 (4)ref|XP_009777634.1|4e-69PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo728020393ref|XP_009777635.1|8e-56PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo
JMSF052L03Sequence606003682 (4)ref|XP_009777634.1|2e-64PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo901012792 (7)ref|XP_004232589.1|6e-91PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF052L03+ CTTGGCTGAC
JMSF024F21+ ACACGATCAAGAACTGACCCTTTCTTGCCTGACCCCTTGGCTGAT
                      ____________________________________________________________
consensus ACACGATCAAGAACTGACCCTTTCTTGCCTGACCCCTTGGCTGAT
 
. : . : . : . : . : . :
JMFF036N23+ TCAGCAATTGCAGGAAGGTGTATGGGGGCATAAAATTACTCACAAGCATTTCCAAGCATA
JMSF052L03+ TCAGCAATTGCAGGAAGGTGTATGGGGGCATAAAATTACTCACAAGCATTTCCAAGCATA
JMSF024F21+ TCAGCAATTGCAGGAAGGTATATGGAGGCATAAAATTACTCACGAGCATTTCCAAGCATA
                      ____________________________________________________________
consensus TCAGCAATTGCAGGAAGGTGTATGGGGGCATAAAATTACTCACAAGCATTTCCAAGCATA
 
. : . : . : . : . : . :
JMFF036N23+ AATCAATGTACTGCCCACTTGATGCTGCCAAGGATACAACTAGTTCCATCAGAGCATCCA
JMSF052L03+ AATCAATGTACTGCCCACTTGATGCTGCCAAGGATACAACTAGTTCCATCAGAGCATCCA
JMSF024F21+ AATCAATGTACTGCCCCCTTGATGCAGCCAAGGATACAACTAGTTCCATCAGAGCATCCA
                      ____________________________________________________________
consensus AATCAATGTACTGCCCACTTGATGCTGCCAAGGATACAACTAGTTCCATCAGAGCATCCA
 
. : . : . : . : . : . :
JMFF036N23+ TCACATCAGTCCCATAGTTCCACATGCTCATTCTAAATATAGAAGAAAGAAGAGATTTAT
JMSF052L03+ TCACATCAGTCCCATAGTTCCACATGCTCATTCTAAATATAGAAGAAAGAAGAGATTTAT
JMSF024F21+ TCACATCAGTCCCATAGTTCCACATGCTCATTTTTATTATAGAAGAAAGAAGAGATTGAT
                      ____________________________________________________________
consensus TCACATCAGTCCCATAGTTCCACATGCTCATTCTAAATATAGAAGAAAGAAGAGATTTAT
 
. : . : . : . : . : . :
JMFF036N23+ GATGAACAATGTCTATACAAGAGACAGCTCCTGACAAAGCCTTTAAACATGTCACAAGTA
JMSF052L03+ GATGAACAATGTCTATACAAGAGACAGCTCCTGACAAAGCCTTTAAACATGTCACAAGTA
JMSF024F21+ GATGAACAATGTCTATACAAGAGACAGCTCCTGACAAAGCCTTTAAACATGTCACAAGTA
                      ____________________________________________________________
consensus GATGAACAATGTCTATACAAGAGACAGCTCCTGACAAAGCCTTTAAACATGTCACAAGTA
 
. : . : . : . : . : . :
JMSF003A01+ TTGATCATGGTTTATAACTCCAACAAGCTGGGAAT
JMFF036N23+ AGGCCACCTCCTCAGGTGATAGATGTTGATCATGGTTTATAACTCCAACAAGCTGGGAAT
JMSF052L03+ AGGCCACCTCCTCAGGTGATAGATGTTGATCATGGTTTATAACTCCAACAAGCTGGGAAT
JMSF024F21+ AGGCCACCTCCTCAGGTAACAGGTATTGATCACGGTTTATAACTCCAACAAGCTGGGAAT
                      ____________________________________________________________
consensus AGGCCACCTCCTCAGGTGATAGATGTTGATCATGGTTTATAACTCCAACAAGCTGGGAAT
 
. : . : . : . : . : . :
JMSF003A01+ AATTGTCCATATCACCCTGGATAGCAGATTTAAGGGCATCCCTGACATGATAGAGCAGCT
JMFF036N23+ AATTGTCCATATCACCCTGGATAGCAGATTTAAGGGCATCCCTGACATGATAGAGCAGCT
JMSF052L03+ AATTGTCCATATCACCCTGGATAGCAGATTTAAGGGCATCCCTGACATGATAGAGCAGCT
JMSF024F21+ AATTGTCCAAATCACCCTGTATAGCAGATTTAAGGGCATCCCTGACATGATAGACCAGCT
                      ____________________________________________________________
consensus AATTGTCCATATCACCCTGGATAGCAGATTTAAGGGCATCCCTGACATGATAGAGCAGCT
 
. : . : . : . : . : . :
JMSF003A01+ CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCATGACTACCTGCTCAGCAGCTAATT
JMFF036N23+ CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCATGACTACCTGCTCAGCAGCTAATT
JMSF052L03+ CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCATGACTACCTGCTCAGCAGCTAATT
JMSF024F21+ CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCACGACACCCTGCTCAGCAGCTAACT
                      ____________________________________________________________
consensus CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCATGACTACCTGCTCAGCAGCTAATT
 
. : . : . : . : . : . :
JMSF003A01+ GCACTCCCATTTCTTCCAATATACGAATGACAATTAACTAAAACTCCAG
JMFF036N23+ GCACTCCCATTTCTTCCAATATACGAATGACAATTAACTAAAACTCCAG
JMSF052L03+ GCACTCCCATTTCTTCCAATATACGAATGACAATTAACTAAAACTCCAG
JMSF024F21+ GCACTCCCATTTCTTCCAATATATGAATGACAACTAACTAAAACCCCAGCAATGGATCGT
                      ____________________________________________________________
consensus GCACTCCCATTTCTTCCAATATACGAATGACAATTAACTAAAACTCCAGCAATGGATCGT
 
. : . : . : . : . : . :
JMSF024F21+ GTCTGTCCCGGTGTGCCGGGATAGGCTGCGAGGGAGAGGAGACCGGTTCCCGACGACGTC
                      ____________________________________________________________
consensus GTCTGTCCCGGTGTGCCGGGATAGGCTGCGAGGGAGAGGAGACCGGTTCCCGACGACGTC
 
. : . : . : . : . : . :
JMSF024F21+ TTGTAGAGTCGTAGTGAGGTAGCGAGCTACTGAGGATGTGAGGTGTGAGCTGCGAACCTC
                      ____________________________________________________________
consensus TTGTAGAGTCGTAGTGAGGTAGCGAGCTACTGAGGATGTGAGGTGTGAGCTGCGAACCTC