Contig 003682:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036N23Sequence595003682 (4)ref|XP_009777634.1|1e-61PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo572012792 (7)ref|XP_004232589.1|1e-43PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola
JMSF003A01Sequence300003682 (4)ref|XP_009777634.1|4e-13PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo763024444ref|XP_004232589.1|2e-44PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola
JMSF024F21Sequence645003682 (4)ref|XP_009777634.1|4e-69PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo728020393ref|XP_009777635.1|8e-56PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo
JMSF052L03Sequence606003682 (4)ref|XP_009777634.1|2e-64PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isofo901012792 (7)ref|XP_004232589.1|6e-91PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sola

Alignment

This contig is upended


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JMSF052L03+                                                             CTTGGCTGAC
JMSF024F21+                          ACACGATCAAGAACTGACCCTTTCTTGCCTGACCCCTTGGCTGAT
                      ____________________________________________________________
consensus                            ACACGATCAAGAACTGACCCTTTCTTGCCTGACCCCTTGGCTGAT
 
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JMFF036N23+           TCAGCAATTGCAGGAAGGTGTATGGGGGCATAAAATTACTCACAAGCATTTCCAAGCATA
JMSF052L03+           TCAGCAATTGCAGGAAGGTGTATGGGGGCATAAAATTACTCACAAGCATTTCCAAGCATA
JMSF024F21+           TCAGCAATTGCAGGAAGGTATATGGAGGCATAAAATTACTCACGAGCATTTCCAAGCATA
                      ____________________________________________________________
consensus             TCAGCAATTGCAGGAAGGTGTATGGGGGCATAAAATTACTCACAAGCATTTCCAAGCATA
 
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JMFF036N23+           AATCAATGTACTGCCCACTTGATGCTGCCAAGGATACAACTAGTTCCATCAGAGCATCCA
JMSF052L03+           AATCAATGTACTGCCCACTTGATGCTGCCAAGGATACAACTAGTTCCATCAGAGCATCCA
JMSF024F21+           AATCAATGTACTGCCCCCTTGATGCAGCCAAGGATACAACTAGTTCCATCAGAGCATCCA
                      ____________________________________________________________
consensus             AATCAATGTACTGCCCACTTGATGCTGCCAAGGATACAACTAGTTCCATCAGAGCATCCA
 
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JMFF036N23+           TCACATCAGTCCCATAGTTCCACATGCTCATTCTAAATATAGAAGAAAGAAGAGATTTAT
JMSF052L03+           TCACATCAGTCCCATAGTTCCACATGCTCATTCTAAATATAGAAGAAAGAAGAGATTTAT
JMSF024F21+           TCACATCAGTCCCATAGTTCCACATGCTCATTTTTATTATAGAAGAAAGAAGAGATTGAT
                      ____________________________________________________________
consensus             TCACATCAGTCCCATAGTTCCACATGCTCATTCTAAATATAGAAGAAAGAAGAGATTTAT
 
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JMFF036N23+           GATGAACAATGTCTATACAAGAGACAGCTCCTGACAAAGCCTTTAAACATGTCACAAGTA
JMSF052L03+           GATGAACAATGTCTATACAAGAGACAGCTCCTGACAAAGCCTTTAAACATGTCACAAGTA
JMSF024F21+           GATGAACAATGTCTATACAAGAGACAGCTCCTGACAAAGCCTTTAAACATGTCACAAGTA
                      ____________________________________________________________
consensus             GATGAACAATGTCTATACAAGAGACAGCTCCTGACAAAGCCTTTAAACATGTCACAAGTA
 
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JMSF003A01+                                    TTGATCATGGTTTATAACTCCAACAAGCTGGGAAT
JMFF036N23+           AGGCCACCTCCTCAGGTGATAGATGTTGATCATGGTTTATAACTCCAACAAGCTGGGAAT
JMSF052L03+           AGGCCACCTCCTCAGGTGATAGATGTTGATCATGGTTTATAACTCCAACAAGCTGGGAAT
JMSF024F21+           AGGCCACCTCCTCAGGTAACAGGTATTGATCACGGTTTATAACTCCAACAAGCTGGGAAT
                      ____________________________________________________________
consensus             AGGCCACCTCCTCAGGTGATAGATGTTGATCATGGTTTATAACTCCAACAAGCTGGGAAT
 
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JMSF003A01+           AATTGTCCATATCACCCTGGATAGCAGATTTAAGGGCATCCCTGACATGATAGAGCAGCT
JMFF036N23+           AATTGTCCATATCACCCTGGATAGCAGATTTAAGGGCATCCCTGACATGATAGAGCAGCT
JMSF052L03+           AATTGTCCATATCACCCTGGATAGCAGATTTAAGGGCATCCCTGACATGATAGAGCAGCT
JMSF024F21+           AATTGTCCAAATCACCCTGTATAGCAGATTTAAGGGCATCCCTGACATGATAGACCAGCT
                      ____________________________________________________________
consensus             AATTGTCCATATCACCCTGGATAGCAGATTTAAGGGCATCCCTGACATGATAGAGCAGCT
 
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JMSF003A01+           CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCATGACTACCTGCTCAGCAGCTAATT
JMFF036N23+           CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCATGACTACCTGCTCAGCAGCTAATT
JMSF052L03+           CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCATGACTACCTGCTCAGCAGCTAATT
JMSF024F21+           CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCACGACACCCTGCTCAGCAGCTAACT
                      ____________________________________________________________
consensus             CTGAATCAGAAAGGTCAACATTCTCAACCTCTGGCATGACTACCTGCTCAGCAGCTAATT
 
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JMSF003A01+           GCACTCCCATTTCTTCCAATATACGAATGACAATTAACTAAAACTCCAG           
JMFF036N23+           GCACTCCCATTTCTTCCAATATACGAATGACAATTAACTAAAACTCCAG           
JMSF052L03+           GCACTCCCATTTCTTCCAATATACGAATGACAATTAACTAAAACTCCAG           
JMSF024F21+           GCACTCCCATTTCTTCCAATATATGAATGACAACTAACTAAAACCCCAGCAATGGATCGT
                      ____________________________________________________________
consensus             GCACTCCCATTTCTTCCAATATACGAATGACAATTAACTAAAACTCCAGCAATGGATCGT
 
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JMSF024F21+           GTCTGTCCCGGTGTGCCGGGATAGGCTGCGAGGGAGAGGAGACCGGTTCCCGACGACGTC
                      ____________________________________________________________
consensus             GTCTGTCCCGGTGTGCCGGGATAGGCTGCGAGGGAGAGGAGACCGGTTCCCGACGACGTC
 
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JMSF024F21+           TTGTAGAGTCGTAGTGAGGTAGCGAGCTACTGAGGATGTGAGGTGTGAGCTGCGAACCTC
                      ____________________________________________________________
consensus             TTGTAGAGTCGTAGTGAGGTAGCGAGCTACTGAGGATGTGAGGTGTGAGCTGCGAACCTC