Contig 003681:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024D18Sequence603003681 (4)ref|XP_006339025.1|6e-11PREDICTED: protein kinase APK1A, chloroplastic-like [Solanum tuberosum]720003012 (3)emb|CDP06608.1|1e-93unnamed protein product [Coffea canephora]
JMSF037K24Sequence171003681 (4)589003012 (3)ref|XP_011094865.1|2e-60PREDICTED: protein kinase APK1A, chloroplastic [Sesamum indicum]
JMSF048D16Sequence655003681 (4)ref|XP_006339025.1|4e-48PREDICTED: protein kinase APK1A, chloroplastic-like [Solanum tuberosum]109023642
JMSF050P08Sequence269003681 (4)476003012 (3)emb|CDP06608.1|8e-29unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF048D16+ GGT
                      ____________________________________________________________
consensus GGT
 
. : . : . : . : . : . :
JMSF048D16+ CATCCCGGACCCGGGCTTTGACGCCACAAGAGTGTGNTCATCAACCCATCCTTTGAAAAC
                      ____________________________________________________________
consensus CATCCCGGACCCGGGCTTTGACGCCACAAGAGTGTGNTCATCAACCCATCCTTTGAAAAC
 
. : . : . : . : . : . :
JMSF048D16+ AGAACCAAAACCCCCTTCCCCCAACACACTGTCGGGACGGAAGTTTCTGGTGGCCGCTTT
JMSF024D18+ CCAAAACCCCCTTCCCCCAACACACNGTNGGGACGGAAG-TTNTGGTGGCCGNTTT
                      ____________________________________________________________
consensus AGAACCAAAACCCCCTTCCCCCAACACACTGTCGGGACGGAAGTTTCTGGTGGCCGCTTT
 
. : . : . : . : . : . :
JMSF048D16+ CAGTTCACTGAAAGTGAAACTCTTCAAGTTGGAGGACTGCAAGATTTCACCCTCACTACG
JMSF024D18+ CAGTTCANTGAAAGTGAAACTNTTCAAGTTGGAGGANTGCAAGATTTCACCCTCANTACG
                      ____________________________________________________________
consensus CAGTTCACTGAAAGTGAAACTCTTCAAGTTGGAGGACTGCAAGATTTCACCCTCACTACG
 
. : . : . : . : . : . :
JMSF048D16+ AGGCGTGGGTGGTACAGAAGCCGATGATAGCTTGTTCGAGTTACTCGATTCAGTCCCATT
JMSF024D18+ AGGCGTGGGTGGTACAGAAGCCGATGATAGNTTGTTNGAGTTACTNGATTCAGTCCCATT
                      ____________________________________________________________
consensus AGGCGTGGGTGGTACAGAAGCCGATGATAGCTTGTTCGAGTTACTCGATTCAGTCCCATT
 
. : . : . : . : . : . :
JMSF048D16+ CCCACTCACATTTCTAGAATCCACCCCTGAACCAACATAAAATGCAGTCTCAGCTTTGAT
JMSF024D18+ CCCACTCACATTTNTAGAATCCACCCCTGAACCAACATAAAATGCAGTNTCAGCTTTGAT
                      ____________________________________________________________
consensus CCCACTCACATTTCTAGAATCCACCCCTGAACCAACATAAAATGCAGTCTCAGCTTTGAT
 
. : . : . : . : . : . :
JMSF048D16+ TTGGTTGCTCAAACAAATCCCCATCACAATAAATACCTCAAGAAAAAACAAAAGATAGTA
JMSF024D18+ TTGGTTGCTCAAACAAATCCCCATCACAATAAATACCTCAAGAAAAAACAAAAGATAGTA
                      ____________________________________________________________
consensus TTGGTTGCTCAAACAAATCCCCATCACAATAAATACCTCAAGAAAAAACAAAAGATAGTA
 
. : . : . : . : . : . :
JMSF048D16+ ACAAAATCAAGAAATAGTCATGTATAAAGCTCAGTAAAAACCCCACAGGGCCCCTGAGCC
JMSF050P08+ CAGTAAAAACCCCNCAGGGCCCGTGAGCC
JMSF024D18+ ACAAAATCAAGAAATAGTCATGTATAAAGCTCAGTAAAAACCCCACAGGGCCCCTGAGCC
                      ____________________________________________________________
consensus ACAAAATCAAGAAATAGTCATGTATAAAGCTCAGTAAAAACCCCACAGGGCCCCTGAGCC
 
. : . : . : . : . : . :
JMSF048D16+ TAGATCTAGTGTGAATCTATAGATTTATCCCTTTCAGCTCTCTCCAAAGGTTGGTTGTTA
JMSF050P08+ TAGATCTAGTGTGANTNTATAGATTTATCCCNNTCAGCTCTCTCCAANGGTGGGTGGTTA
JMSF024D18+ TAGATCTAGTGTGAATCTATAGATTTATCCCTTTCAGCTCTCTCCAAAGGTTGGTTGTTA
                      ____________________________________________________________
consensus TAGATCTAGTGTGAATCTATAGATTTATCCCTTTCAGCTCTCTCCAAAGGTTGGTTGTTA
 
. : . : . : . : . : . :
JMSF048D16+ GTCTCCAACTACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
JMSF050P08+ GTCTCCAACTACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
JMSF037K24+ TACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
JMSF024D18+ GTCTCCAACTACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
                      ____________________________________________________________
consensus GTCTCCAACTACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
 
. : . : . : . : . : . :
JMSF048D16+ AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
JMSF050P08+ AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
JMSF037K24+ AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
JMSF024D18+ AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
                      ____________________________________________________________
consensus AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
 
. : . : . : . : . : . :
JMSF048D16+ TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTT
JMSF050P08+ TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTTGAGACAACC
JMSF037K24+ TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTTGAGACAACC
JMSF024D18+ TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTTGAGACAACC
                      ____________________________________________________________
consensus TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTTGAGACAACC