Contig 003681:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024D18Sequence603003681 (4)ref|XP_006339025.1|6e-11PREDICTED: protein kinase APK1A, chloroplastic-like [Solanum tuberosum]720003012 (3)emb|CDP06608.1|1e-93unnamed protein product [Coffea canephora]
JMSF037K24Sequence171003681 (4)589003012 (3)ref|XP_011094865.1|2e-60PREDICTED: protein kinase APK1A, chloroplastic [Sesamum indicum]
JMSF048D16Sequence655003681 (4)ref|XP_006339025.1|4e-48PREDICTED: protein kinase APK1A, chloroplastic-like [Solanum tuberosum]109023642
JMSF050P08Sequence269003681 (4)476003012 (3)emb|CDP06608.1|8e-29unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF048D16+                                                                    GGT
                      ____________________________________________________________
consensus                                                                      GGT
 
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JMSF048D16+           CATCCCGGACCCGGGCTTTGACGCCACAAGAGTGTGNTCATCAACCCATCCTTTGAAAAC
                      ____________________________________________________________
consensus             CATCCCGGACCCGGGCTTTGACGCCACAAGAGTGTGNTCATCAACCCATCCTTTGAAAAC
 
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JMSF048D16+           AGAACCAAAACCCCCTTCCCCCAACACACTGTCGGGACGGAAGTTTCTGGTGGCCGCTTT
JMSF024D18+               CCAAAACCCCCTTCCCCCAACACACNGTNGGGACGGAAG-TTNTGGTGGCCGNTTT
                      ____________________________________________________________
consensus             AGAACCAAAACCCCCTTCCCCCAACACACTGTCGGGACGGAAGTTTCTGGTGGCCGCTTT
 
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JMSF048D16+           CAGTTCACTGAAAGTGAAACTCTTCAAGTTGGAGGACTGCAAGATTTCACCCTCACTACG
JMSF024D18+           CAGTTCANTGAAAGTGAAACTNTTCAAGTTGGAGGANTGCAAGATTTCACCCTCANTACG
                      ____________________________________________________________
consensus             CAGTTCACTGAAAGTGAAACTCTTCAAGTTGGAGGACTGCAAGATTTCACCCTCACTACG
 
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JMSF048D16+           AGGCGTGGGTGGTACAGAAGCCGATGATAGCTTGTTCGAGTTACTCGATTCAGTCCCATT
JMSF024D18+           AGGCGTGGGTGGTACAGAAGCCGATGATAGNTTGTTNGAGTTACTNGATTCAGTCCCATT
                      ____________________________________________________________
consensus             AGGCGTGGGTGGTACAGAAGCCGATGATAGCTTGTTCGAGTTACTCGATTCAGTCCCATT
 
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JMSF048D16+           CCCACTCACATTTCTAGAATCCACCCCTGAACCAACATAAAATGCAGTCTCAGCTTTGAT
JMSF024D18+           CCCACTCACATTTNTAGAATCCACCCCTGAACCAACATAAAATGCAGTNTCAGCTTTGAT
                      ____________________________________________________________
consensus             CCCACTCACATTTCTAGAATCCACCCCTGAACCAACATAAAATGCAGTCTCAGCTTTGAT
 
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JMSF048D16+           TTGGTTGCTCAAACAAATCCCCATCACAATAAATACCTCAAGAAAAAACAAAAGATAGTA
JMSF024D18+           TTGGTTGCTCAAACAAATCCCCATCACAATAAATACCTCAAGAAAAAACAAAAGATAGTA
                      ____________________________________________________________
consensus             TTGGTTGCTCAAACAAATCCCCATCACAATAAATACCTCAAGAAAAAACAAAAGATAGTA
 
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JMSF048D16+           ACAAAATCAAGAAATAGTCATGTATAAAGCTCAGTAAAAACCCCACAGGGCCCCTGAGCC
JMSF050P08+                                          CAGTAAAAACCCCNCAGGGCCCGTGAGCC
JMSF024D18+           ACAAAATCAAGAAATAGTCATGTATAAAGCTCAGTAAAAACCCCACAGGGCCCCTGAGCC
                      ____________________________________________________________
consensus             ACAAAATCAAGAAATAGTCATGTATAAAGCTCAGTAAAAACCCCACAGGGCCCCTGAGCC
 
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JMSF048D16+           TAGATCTAGTGTGAATCTATAGATTTATCCCTTTCAGCTCTCTCCAAAGGTTGGTTGTTA
JMSF050P08+           TAGATCTAGTGTGANTNTATAGATTTATCCCNNTCAGCTCTCTCCAANGGTGGGTGGTTA
JMSF024D18+           TAGATCTAGTGTGAATCTATAGATTTATCCCTTTCAGCTCTCTCCAAAGGTTGGTTGTTA
                      ____________________________________________________________
consensus             TAGATCTAGTGTGAATCTATAGATTTATCCCTTTCAGCTCTCTCCAAAGGTTGGTTGTTA
 
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JMSF048D16+           GTCTCCAACTACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
JMSF050P08+           GTCTCCAACTACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
JMSF037K24+                    TACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
JMSF024D18+           GTCTCCAACTACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
                      ____________________________________________________________
consensus             GTCTCCAACTACCCCCCCTATATCTCTCTCTCCATATATAAATATACACTAATATACCCC
 
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JMSF048D16+           AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
JMSF050P08+           AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
JMSF037K24+           AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
JMSF024D18+           AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
                      ____________________________________________________________
consensus             AACTTGTCTTGTAGGTAAGATAACCGGTGAGGAAATTGAAAAAACAAGAAAACCCAAACT
 
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JMSF048D16+           TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTT         
JMSF050P08+           TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTTGAGACAACC
JMSF037K24+           TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTTGAGACAACC
JMSF024D18+           TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTTGAGACAACC
                      ____________________________________________________________
consensus             TTTGAACAAAAAATTGTATCTTTCCAGTGGATTTCGGATGAGAAAACCCTTGAGACAACC