Contig 003680:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001E16Sequence266003680 (3)ref|XP_009628041.1|93.2PREDICTED: malonate--CoA ligase-like isoform X1 [Nicotiana tomentosiformis]778013873 (6)ref|XP_009628043.1|198PREDICTED: malonate--CoA ligase-like isoform X3 [Nicotiana tomentosiformis]
JMSF017P22Sequence310003680 (3)ref|XP_009628042.1|125PREDICTED: malonate--CoA ligase-like isoform X2 [Nicotiana tomentosiformis]695013873 (6)ref|XP_009786717.1|3e-60PREDICTED: malonate--CoA ligase-like [Nicotiana sylvestris]
JMSF024D08Sequence651003680 (3)ref|XP_009628042.1|170PREDICTED: malonate--CoA ligase-like isoform X2 [Nicotiana tomentosiformis]734004267 (52)ref|XP_004230256.1|7e-26PREDICTED: auxin-repressed 12.5 kDa protein [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF024D08+                    TCTGGGTAGCTCAGAGCTAGAGGGACTGCAACACCTCCATTAAGCCAAATC
                      ____________________________________________________________
consensus                      TCTGGGTAGCTCAGAGCTAGAGGGACTGCAACACCTCCATTAAGCCAAATC
 
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JMSF017P22+                                   GGACAGGGTTNGGCTACAATTCCAACCCTTGCCCCA
JMSF024D08+           CCGAGAATTGCAGCAACAAACTCCGGACAGGGTTTGGCTACAATTCCAACCCTTGCCCCA
                      ____________________________________________________________
consensus             CCGAGAATTGCAGCAACAAACTCCGGACAGGGTTTGGCTACAATTCCAACCCTTGCCCCA
 
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JMSF017P22+           CCAAGATCATTATTCCGCCTTATGTTATCCTCAGTTTTTAGATCAAGATTGCTTAACAGA
JMSF001E16+                                                TTAGATCAAGATTGCTTAACAGA
JMSF024D08+           CCAAGATCATTATTCCGCCTTATGTTATCCTCAGTTTTTAGATCAAGATTGCTTAACAGA
                      ____________________________________________________________
consensus             CCAAGATCATTATTCCGCCTTATGTTATCCTCAGTTTTTAGATCAAGATTGCTTAACAGA
 
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JMSF017P22+           CTGCATATCCCCTTAGCACACGAGATCAGTTGAAGGTAACTGAAGCACTTTTGATCTGCC
JMSF001E16+           CTGCATATCCCCTTAGCACACGAGATCAGTTGAAGGTAACTGAAGCACTTTTGATCTGCC
JMSF024D08+           CTGCATATCCCCTTAGCACACGAGATCAGTTGAAGGTAACTGAAGCACTTTTGATCTGCC
                      ____________________________________________________________
consensus             CTGCATATCCCCTTAGCACACGAGATCAGTTGAAGGTAACTGAAGCACTTTTGATCTGCC
 
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JMSF017P22+           TTTATGGCAATACTCCCAAAGGAATCAGGCCCTTTGCTGGCTACTTCTTTAACCAGATCC
JMSF001E16+           TTTATGGCAATACTCCCAAAGGAATCAGGCCCTTTGCTGGCTACTTCTTTAACCAGATCC
JMSF024D08+           TTTATGGCAATACTCCCAAAGGAATCAGGCCCTTTGCTGGCTACTTCTTTAACCAGATCC
                      ____________________________________________________________
consensus             TTTATGGCAATACTCCCAAAGGAATCAGGCCCTTTGCTGGCTACTTCTTTAACCAGATCC
 
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JMSF017P22+           ATATATATGCTACTCTTTTGAGCAGAAGAGTAGAGGCGACGCTGGGAGTAGATAAAGGCG
JMSF001E16+           ATATATATGCTACTCTTTTGAGCAGAAGAGTAGAGGCGACGCTGGGAGTAGATAAAGGCG
JMSF024D08+           ATATATATGCTACTCTTTTGAGCAGAAGAGTAGAGGCGACGCTGGGAGTAGATAAAGGCG
                      ____________________________________________________________
consensus             ATATATATGCTACTCTTTTGAGCAGAAGAGTAGAGGCGACGCTGGGAGTAGATAAAGGCG
 
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JMSF017P22+           GGACCTTTGCTAGAAATGAATCGGAGAAAAC                             
JMSF001E16+           GGACCTTTGCTAGAAATGAATCGGAGAAAACAAGAATTGGGACAGCTGAGAGCTCTAGCT
JMSF024D08+           GGACCTTTGCTAGAAATGAATCGGAGAAAACAAGAATTGGGACAGCTGAGAGCTCTAGCT
                      ____________________________________________________________
consensus             GGACCTTTGCTAGAAATGAATCGGAGAAAACAAGAATTGGGACAGCTGAGAGCTCTAGCT
 
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JMSF001E16+           GT                                                          
JMSF024D08+           GTGAGATAGAAGCCTGCCTTAAATGAGCTCATAAGACGAGCAGTTGCGAGGTGGGTAGGT
                      ____________________________________________________________
consensus             GTGAGATAGAAGCCTGCCTTAAATGAGCTCATAAGACGAGCAGTTGCGAGGTGGGTAGGT
 
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JMSF024D08+           CCTCCTTTAGTCCTTTTGGCTTCAATTCAGAAACCGCGGTGAAAAATTTATTGCAACCCG
                      ____________________________________________________________
consensus             CCTCCTTTAGTCCTTTTGGCTTCAATTCAGAAACCGCGGTGAAAAATTTATTGCAACCCG
 
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JMSF024D08+           AAATTTCTGTTGGCATTTACTGCAAGCTGAGAAGATGGATAACTTTGAAATTTCTGGGTC
                      ____________________________________________________________
consensus             AAATTTCTGTTGGCATTTACTGCAAGCTGAGAAGATGGATAACTTTGAAATTTCTGGGTC
 
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JMSF024D08+           TTCCATTATCTTCTGCACTTACGTAAACGGAATTCATTGCTCCGGATTTCGTCTGTTATC
                      ____________________________________________________________
consensus             TTCCATTATCTTCTGCACTTACGTAAACGGAATTCATTGCTCCGGATTTCGTCTGTTATC