Contig 003677:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS023A01Sequence437003677 (3)
JMSF024A10Sequence690003677 (3)emb|CDP06846.1|1e-38unnamed protein product [Coffea canephora]772010113 (2)ref|XP_009798953.1|3e-49PREDICTED: poly(rC)-binding protein 1 [Nicotiana sylvestris] ref|XP_009798954.1|
JMSF052F23Sequence616003677 (3)gb|EYU26865.1|2e-21hypothetical protein MIMGU_mgv1a004357mg [Erythranthe guttata]884010113 (2)ref|XP_011087393.1|3e-58PREDICTED: poly(rC)-binding protein 1 [Sesamum indicum] ref|XP_011087394.1| PRED

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024A10+                                         TCCACAACACGTTTATGAACCCTTAGAAGA
                      ____________________________________________________________
consensus                                           TCCACAACACGTTTATGAACCCTTAGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+                                                     GCAGATACCATAACAGCT
JMSF024A10+           CCATCTATAGCAGGTGGCAGAGAAGAATCAGGCTCCTCCTTGGCAGATACCATAACAGCT
                      ____________________________________________________________
consensus             CCATCTATAGCAGGTGGCAGAGAAGAATCAGGCTCCTCCTTGGCAGATACCATAACAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           CTCTCCGCTGTTCCTGGAGGACCATCAAGAATCTTAATTCGAGCTTTTGCCTCTTCACAC
JMSF024A10+           CTCTCCGCTGTTCCTGGAGGACCATCAAGAATCTTAATTCGAGCTTTTGCCTCTTCACAC
                      ____________________________________________________________
consensus             CTCTCCGCTGTTCCTGGAGGACCATCAAGAATCTTAATTCGAGCTTTTGCCTCTTCACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           ATCTTTTTAATGTACTCTCCCTTCCGTCCAATAATACTACCAACCTTTTGCGCAGGAACC
JMFS023A01+                                                            GCGCAGGAACC
JMSF024A10+           ATCTTTTTAATGTACTCTCCCTTCCGTCCAATAATACTACCAACCTTTTGCGCAGGAACC
                      ____________________________________________________________
consensus             ATCTTTTTAATGTACTCTCCCTTCCGTCCAATAATACTACCAACCTTTTGCGCAGGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           AGCATCCGGAATACACTTTCTCCAGGCCACCCAGGCCACCTCTCACCCCCTTCGGTAGTC
JMFS023A01+           AGCATCCGGAATACACTTTCTCCAGGCCACCCAGGCCACCTCTCACCCCCTTCGGTAGTC
JMSF024A10+           AGCATCCGGAATACACTTTCTCCAGGCCACCCAGGCCACCTCTCACCCCCTTCGGTAGTC
                      ____________________________________________________________
consensus             AGCATCCGGAATACACTTTCTCCAGGCCACCCAGGCCACCTCTCACCCCCTTCGGTAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           AAAGCATTTTCTATTTCTGGCTTTTGCTCAGGATGAGAGTCATCCTGCTCCAGCTCAGGC
JMFS023A01+           AAAGCATTTTCTATTTCTGGCTTTTGCTCAGGATGAGAGTCATCCTGCTCCAGCTCAGGC
JMSF024A10+           AAAGCATTTTCTATTTCTGGCTTTTGCTCAGGATGAGAGTCATCCTGCTCCAGCTCAGGC
                      ____________________________________________________________
consensus             AAAGCATTTTCTATTTCTGGCTTTTGCTCAGGATGAGAGTCATCCTGCTCCAGCTCAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           TCCATCTCCCCCTCTTGCTCTTGCTCTTGCTCTAGCTCTGGCTCTGGTGCCAT-TCTAAT
JMFS023A01+           TCCATCTCCCCCTCTTGCTCTTGCTCTTGCTCTAGCTCTGGCTCTGGTGCCATCTCTAAT
JMSF024A10+           TCCATCTCCCCCTCTTGCTCTTGCTCTTGCTCTAGCTCTGGCTCTGGTGCCATCTCTAAT
                      ____________________________________________________________
consensus             TCCATCTCCCCCTCTTGCTCTTGCTCTTGCTCTAGCTCTGGCTCTGGTGCCATCTCTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           GGTCCATCATTTTCATGTTCATCAATGCTTTTATCAATTTCAGCCATAAACTCTGCTGTT
JMFS023A01+           GGTCCATCATTTTCATGTTCATCAATGCTTTTATCAATTTCAGCCATAAACTCTGCTGTT
JMSF024A10+           GGTCCATCATTTTCATGTTCATCAATGCTTTTATCAATTTCAGCCATAAACTCTGCTGTT
                      ____________________________________________________________
consensus             GGTCCATCATTTTCATGTTCATCAATGCTTTTATCAATTTCAGCCATAAACTCTGCTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           AATTAAGGGATTTAAATATTTGCAGAGCTACAAGAACGAGAGCGACAGAACCGCCGTTCA
JMFS023A01+           AATTAAGGGATTTAAATATTTGCAGAGCTACAAGAACGAGAGCGACAAAACCGCCGTTCA
JMSF024A10+           AATTAAGGGATTTAAATATTTGCAGAGCTACAAGAACGAGAGCGACAGAACCGCCGTTCA
                      ____________________________________________________________
consensus             AATTAAGGGATTTAAATATTTGCAGAGCTACAAGAACGAGAGCGACAGAACCGCCGTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           AAGTCTACGCACACAGCTACCAGTTGCCTAGCTACCGTTCACCGAGCTACTATTCGCCGG
JMFS023A01+           AAGTCTACGCACACAGCTACCAGTTGCCTAGCTACCGTTCACCGAGCTACTATTCGCCGG
JMSF024A10+           AAGTCTACGCACACAGCTACCAGTTGCCTAGCTACCGTTCACCGAGCTACTATTCGCCGG
                      ____________________________________________________________
consensus             AAGTCTACGCACACAGCTACCAGTTGCCTAGCTACCGTTCACCGAGCTACTATTCGCCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           AGTAGTGCAGGACTGCCGGAGGCCGAAGAGGATAGGGTGACGAATGATGGTGTGTCGGCG
JMFS023A01+           AGTAGTGCAGGACTGCCGGAGGCCGAAGAGGATAGGGTGACGAATGATGGTGTGTCGGCG
JMSF024A10+           AGTAGTGCAGGACTGCCGGAGGCCGAAGAGGATAGGGTGACGAATGATGGTGTGTCGGCG
                      ____________________________________________________________
consensus             AGTAGTGCAGGACTGCCGGAGGCCGAAGAGGATAGGGTGACGAATGATGGTGTGTCGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052F23+           CGAGAGATGTGTGTCCGACTGTCCGTGAAGGCGTGAAGTTTTGTGGAATTAGGGCTT   
JMFS023A01+           CGAGAG                                                      
JMSF024A10+           CGAGAGATGTGTGTCCGACTGTCCGTGAAGGCGTGAAGTTTTGTGGAATTAGGGCTTCCC
                      ____________________________________________________________
consensus             CGAGAGATGTGTGTCCGACTGTCCGTGAAGGCGTGAAGTTTTGTGGAATTAGGGCTTCCC