| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS007H02 | Sequence | 509 | 003674 (5) | ref|XP_010316978.1| | 5e-21 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i | |||||
| JMFS040D12 | Sequence | 623 | 003674 (5) | ref|XP_010316978.1| | 9e-40 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i | |||||
| JMFS124E12 | Sequence | 562 | 003674 (5) | ref|XP_010316978.1| | 2e-33 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i | |||||
| JMSF023M23 | Sequence | 596 | 003674 (5) | ref|XP_010316978.1| | 6e-34 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i | 738 | 007189 (2) | ref|XP_009589769.1| | 9e-63 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i |
| JMSF038I13 | Sequence | 650 | 003674 (5) | ref|XP_010316978.1| | 5e-46 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i | 939 | 007189 (2) | ref|XP_009589769.1| | 3e-79 | PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic-like i |
This contig is upended
. : . : . : . : . : . :
JMFS040D12+ TGAACGTGGCACCCTCTTCCAATTGAA
JMSF038I13+ GGTTCGGAAGGGGCACGCAGCCTTGAACGTGGCACCCTCTTCCAATTGAA
____________________________________________________________
consensus GGTTCGGAAGGGGCACGCAGCCTTGAACGTGGCACCCTCTTCCAATTGAA
. : . : . : . : . : . :
JMFS040D12+ AATCCTCCTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCNC
JMSF038I13+ AATCCTCCTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCCC
JMFS124E12+ CTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCCC
JMSF023M23+ CTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCCC
____________________________________________________________
consensus AATCCTCCTTGAAGTAGAGCGCGGGCACTTCCCGGAGGCACGCGACGAGCGCATTCTCCC
. : . : . : . : . : . :
JMFS007H02+ GCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
JMFS040D12+ CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
JMSF038I13+ CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
JMFS124E12+ CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
JMSF023M23+ CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
____________________________________________________________
consensus CGTTCTGGCCTTCAAGGGACTCAAACTTAGTGTGCTGTTGGATGTCATGGAAACGGGCAT
. : . : . : . : . : . :
JMFS007H02+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
JMFS040D12+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
JMSF038I13+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
JMFS124E12+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
JMSF023M23+ ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
____________________________________________________________
consensus ACGGTTCGGAGATAGAGGACAAGTATGTGACGAAATCGGGTCGGACGAGATCAGATCCGG
. : . : . : . : . : . :
JMFS007H02+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
JMFS040D12+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
JMSF038I13+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
JMFS124E12+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
JMSF023M23+ GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
____________________________________________________________
consensus GCTTGGGCGGAGGCGGAAGAGCGGCGAATTCGGGGACGGGGACAGACGCCGAGGCGGACC
. : . : . : . : . : . :
JMFS007H02+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
JMFS040D12+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
JMSF038I13+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
JMFS124E12+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
JMSF023M23+ ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
____________________________________________________________
consensus ACCACCAGGTGTCAGATTTTCCAGCATGCGGATTATTGAGAATGGAAGCTAAGCTCTGGC
. : . : . : . : . : . :
JMFS007H02+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
JMFS040D12+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
JMSF038I13+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
JMFS124E12+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
JMSF023M23+ TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
____________________________________________________________
consensus TATGGCTGTTGGATTCGGAGTTGGATCGCGAAACCTTAGTGTTGAAACTCTCTTGAGCTT
. : . : . : . : . : . :
JMFS007H02+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
JMFS040D12+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
JMSF038I13+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
JMFS124E12+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
JMSF023M23+ CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
____________________________________________________________
consensus CGAACCTTCCCGACGACAGGGAAGGCTGTGATTCCATTTTCTCCGTCAAGATCTAAATAC
. : . : . : . : . : . :
JMFS007H02+ CATAGA--CGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
JMFS040D12+ CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
JMSF038I13+ CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
JMFS124E12+ CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
JMSF023M23+ CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
____________________________________________________________
consensus CATAGACGCGCATCAACAACAACACGAGACGAAGAATTTGCACATGCATACACAGAGTGA
. : . : . : . : . : . :
JMFS007H02+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
JMFS040D12+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
JMSF038I13+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
JMFS124E12+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
JMSF023M23+ GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
____________________________________________________________
consensus GTGATCTGAATCGCGGAGGATTGGATCTGAATGTGATCGAAAATGAGCAGTGGCAGCGAT
. : . : . : . : . : . :
JMFS007H02+ GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCG
JMFS040D12+ GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCGTTCAGCGGTGAGGT
JMSF038I13+ GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCGTTCAGCGGTGAGGT
JMFS124E12+ GGAGGAGTTAGAGAGAGAGAGAATGTGGT
JMSF023M23+ GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCGTTCAGCGGTGAGGTGAATCCTC
____________________________________________________________
consensus GGAGGAGTTAGAGAGAGAGAGAATGTGGTGACTGTTCGTTCAGCGGTGAGGTGAATCCTC