Contig 003660:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002K24Sequence474003660 (4)588013655 (4)ref|XP_011073647.1|2e-08PREDICTED: protein SPT2 homolog isoform X3 [Sesamum indicum]
JMFS062B01Sequence630003660 (4)ref|XP_004234640.1|2e-20PREDICTED: protein SPT2 homolog isoform X1 [Solanum lycopersicum]
JMFS062D10Sequence606003660 (4)ref|XP_004234640.1|2e-17PREDICTED: protein SPT2 homolog isoform X1 [Solanum lycopersicum]
JMSF021G02Sequence664003660 (4)ref|XP_004234640.1|3e-23PREDICTED: protein SPT2 homolog isoform X1 [Solanum lycopersicum]777016092ref|XP_009781867.1|7e-20PREDICTED: protein SPT2 homolog [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF021G02+                                                                   TNGG
                      ____________________________________________________________
consensus                                                                     TNGG
 
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JMFS062B01+                       CATGGTTACTGGTACTGGACTTTGGTCTCGCAGAGTTCGAGGCATGAA
JMFS062D10+                                               GTCTCGCAGAGTTCGAGGCATGAA
JMSF021G02+           AAACTTTTGGTGCATGGTTACTGGTACTGGACTTTGGTCTCGCAGAGTTCGAGGCATGAA
                      ____________________________________________________________
consensus             AAACTTTTGGTGCATGGTTACTGGTACTGGACTTTGGTCTCGCAGAGTTCGAGGCATGAA
 
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JMFS062B01+           CCTTATTACCACTAGCAATATTTTTCCTCATAACTTTATCTGCCAAATCAGGGTTCTCCA
JMFS062D10+           CCTTATTACCACTAGCAATATTTTTCCTCATAACTTTATCTGCCAAATCAGGGTTCTCCA
JMSF021G02+           CCTTATTACCACTAGCAATATTTTTCCTCATAACTTTATCTGCCAAATCAGGGTTCTCCA
                      ____________________________________________________________
consensus             CCTTATTACCACTAGCAATATTTTTCCTCATAACTTTATCTGCCAAATCAGGGTTCTCCA
 
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JMFS062B01+           ATAAGGACTTGCTTTCTTGAATTACTCTTTGAGCTATAACTGGCTGTGATGGTCCAAAGA
JMFS062D10+           ATAAGGACTTGCTTTCTTGAATTACTCTTTGAGCTATAACTGGCTGTGATGGTCCAAAGA
JMSF021G02+           ATAAGGACTTGCTTTCTTGAATTACTCTTTGAGCTATAACTGGCTGTGATGGTCCAAAGA
                      ____________________________________________________________
consensus             ATAAGGACTTGCTTTCTTGAATTACTCTTTGAGCTATAACTGGCTGTGATGGTCCAAAGA
 
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JMFS062B01+           AGGAACCAAAATTATCCTTGGATGAAGAACTCTTGATATTACGGGAACTGGAAGCACTTC
JMFS062D10+           AGGAACCAAAATTATCCTTGGATGAAGAACTCTTGATATTACGGGAACTGGAAGCACTTC
JMFF002K24+                CCAAAATTATCCNTGGATGAAGAACCCTTGATATTACGGGAACTGGAAGCACTTC
JMSF021G02+           AGGAACCAAAATTATCCTTGGATGAAGAACTCTTGATATTACGGGAACTGGAAGCACTTC
                      ____________________________________________________________
consensus             AGGAACCAAAATTATCCTTGGATGAAGAACTCTTGATATTACGGGAACTGGAAGCACTTC
 
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JMFS062B01+           CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
JMFS062D10+           CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
JMFF002K24+           CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
JMSF021G02+           CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
                      ____________________________________________________________
consensus             CAGTTCCCATCTCTTTCTTCATCTTCTTTCTAAATCTTTCTTTCAGTTTTTGCCTTAGTT
 
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JMFS062B01+           CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
JMFS062D10+           CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
JMFF002K24+           CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
JMSF021G02+           CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
                      ____________________________________________________________
consensus             CCAAATATTCCAACTCCTCCATTGAAGGCTCATGTGTTTCTTCCTGCTCACACTCCTCCT
 
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JMFS062B01+           CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
JMFS062D10+           CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
JMFF002K24+           CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
JMSF021G02+           CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
                      ____________________________________________________________
consensus             CCTCTTCATAGCCCCCTTCCTCATCTTCACCATCCTCTTCATACTCATCCAAATCCTCAT
 
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JMFS062B01+           ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
JMFS062D10+           ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
JMFF002K24+           ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
JMSF021G02+           ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
                      ____________________________________________________________
consensus             ATTCATCACTGGCATATCTCGACATAGCTGGTTGAATCATTCAATGTGATTACAAATTGT
 
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JMFS062B01+           ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
JMFS062D10+           ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
JMFF002K24+           ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
JMSF021G02+           ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
                      ____________________________________________________________
consensus             ACACAGAAAGCCTGAATCGATGCTGAAAAAGCTGGGGAATCAGTCAAAACGATCGGAAAA
 
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JMFS062B01+           GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
JMFS062D10+           GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
JMFF002K24+           GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
JMSF021G02+           GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
                      ____________________________________________________________
consensus             GGCGAAATCGAGCGCAGATGCGAAGAGAGCAAATCCGAGGGATTTCAGATCTGGAGAAAC
 
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JMFS062B01+           GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAG                  
JMFS062D10+           GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAG                  
JMFF002K24+           GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAGGGATGCGTTGAGAAAT  
JMSF021G02+           GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAGGGATGCGTTGAGAAATTC
                      ____________________________________________________________
consensus             GGCTAATGCGAATATATGCACGTAGAAGGCGCGACGACGGAGGGATGCGTTGAGAAATTC