Contig 003652:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS045F09Sequence559003652 (5)emb|CDP05904.1|4e-110unnamed protein product [Coffea canephora]
JMSF019B04Sequence274003652 (5)ref|XP_006348242.1|5e-35PREDICTED: choline transporter-like protein 2-like [Solanum tuberosum]771002833 (4)emb|CDP05903.1|1e-101unnamed protein product [Coffea canephora]
JMSF020F02Sequence405003652 (5)ref|XP_006348242.1|5e-52PREDICTED: choline transporter-like protein 2-like [Solanum tuberosum]708002833 (4)emb|CDP05903.1|6e-110unnamed protein product [Coffea canephora]
JMSF026D12Sequence713003652 (5)ref|XP_006348242.1|2e-131PREDICTED: choline transporter-like protein 2-like [Solanum tuberosum]737002833 (4)emb|CDP05903.1|9e-102unnamed protein product [Coffea canephora]
JMSF028P04Sequence171003652 (5)ref|XP_006348242.1|5e-21PREDICTED: choline transporter-like protein 2-like [Solanum tuberosum]702002833 (4)emb|CDP05903.1|3e-95unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF026D12+                                           ATCAGCAACGTATCGCTTAAAGACTGAT
                      ____________________________________________________________
consensus                                             ATCAGCAACGTATCGCTTAAAGACTGAT
 
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JMSF026D12+           GATCGGGAGTTGATGGACCTATGAATTGCTTTATCTATTATAATATCCTCAAAAATTTTC
                      ____________________________________________________________
consensus             GATCGGGAGTTGATGGACCTATGAATTGCTTTATCTATTATAATATCCTCAAAAATTTTC
 
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JMFS045F09+                                ATGCCGCAAAGACACATTTGACAAGCGAGAAATAAATTG
JMSF026D12+           AATCCCACCCATCTCCTTCCAATGCCGCAAAGACACATTTGATGCCCGAGCAATAAATTG
                      ____________________________________________________________
consensus             AATCCCACCCATCTCCTTCCAATGCCGCAAAGACACATTTGATGCGCGAGCAATAAATTG
 
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JMFS045F09+           GCAGCTCCAATAAACATTAACACTAGGAAATATGACAGGGTAACATGGACCCAGGAGCTG
JMSF026D12+           GCAGCTCCAATAAACATTAACGCTAGGAAATATGACAGGGTAACAAGGACCCTGAAGCTG
                      ____________________________________________________________
consensus             GCAGCTCCAATAAACATTAACGCTAGGAAATATGACAGGGTAACATGGACCCTGGAGCTG
 
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JMFS045F09+           AAGAGAATTTTTCCTTAAATCAGGAGGAAGATCAGCAAAATAATCATAATTCCTATCAAT
JMSF026D12+           AAGGGACGCGTTCCTTAATTCAGGAGTAAGGTCAGCAAAATAATCATAGTTTCTATCAAT
                      ____________________________________________________________
consensus             AAGGGACTTTTTCCTTAATTCAGGAGTAAGGTCAGCAAAATAATCATAGTTTCTATCAAT
 
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JMFS045F09+           CCAGTTTTCAACTGAGAGACGAACGTCACCATCTGGATAATCACAGACCCAATTTAGTGA
JMSF026D12+           CCAGTCATCAACTGCAAGACGAATGTCACCCTCGGGATAGTCACAAACCCAATTTAGTGA
                      ____________________________________________________________
consensus             CCAGTTTTCAACTGCGAGACGAATGTCACCCTCTGGATAGTCACAGACCCAATTTAGTGA
 
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JMFS045F09+           ATCTTCTGATGGAATAGGGCAGTCCAACAAGCAAATACTTCGGGCATTTGGAAGCTTGAC
JMSF026D12+           ATCTTCTGACGGGATAGGGCAGTCCATCAAGCAAATACTTCGGGCATTAGCAAGCTTGAC
                      ____________________________________________________________
consensus             ATCTTCTGATGGGATAGGGCAGTCCATCAAGCAAATACTTCGGGCATTTGGAAGCTTGAC
 
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JMFS045F09+           ATCACCATCCTTTAGACCACTTTGATAAACCTCATTGGGATTTAACCAATATCTGACTTC
JMSF026D12+           ATCACTGTCCTTCGAGCCACTTTGATAAACTTCGTTGGGATTTAACCAATATCTGAGGTC
JMSF020F02+                          GCCACTTTGATAAACTTCGTTGGGATTTAANCAATATNTGAGGTC
                      ____________________________________________________________
consensus             ATCACTGTCCTTTGGGCCACTTTGATAAACTTCGTTGGGATTTAACCAATATCTGAGGTC
 
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JMFS045F09+           CAAATTATGAAGGTTAGGGTCTGCATGTCGGTCACCACAAATGTTACCTTTATAATCAAG
JMSF026D12+           CAACTCGTGAAGGTTCGGGTCTGCATGTCTGTCACCACAAACGTTGCCTTTATAGTCCAG
JMSF019B04+                                                         CCTTTATAGTCCAG
JMSF020F02+           CAACTCGTGAAGGTTNGGGTNTGCATGTCTGTCACCACAAACGTTGCCTTTATAGTCCAG
                      ____________________________________________________________
consensus             CAACTCGTGAAGGTTCGGGTCTGCATGTCTGTCACCACAAACGTTGCCTTTATAGTCCAG
 
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JMFS045F09+           CCCATAAGTTAACCTTAATGGGTTTCCTTTGTTGAATCCAAAGCTAGAATTCACAATCAT
JMSF026D12+           TCCATAAGTCAACCTTAATGGGTTTCCTTGGTTGAATCCAAAGCTGGAATTTACTATCAT
JMSF019B04+           TCCATAAGTCANCCTTAATGGGTTTCCTTGGTTGAATCCAAAGCTGGAATTTACTATCAT
JMSF028P04+                                             AATCCAAAGNTGGAATTTACTATCAT
JMSF020F02+           TNCATAAGTCAACCTTAATGGGTTTCCTTGGTTGAATCCAAAGCTGGAATTTACTATCAT
                      ____________________________________________________________
consensus             TCCATAAGTCAACCTTAATGGGTTTCCTTGGTTGAATCCAAAGCTGGAATTTACTATCAT
 
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JMFS045F09+           AGCAACCCAAAATGCAATGAAGATGATCAGAAACACCACATCTCTGCATTTCCTGTTGTG
JMSF026D12+           AGCCACCCAGAAAGCAATGAAGATGAGCAGAAACACCACATCTCTGCATTTCCTGTTGTG
JMSF019B04+           AGCCACCCAGAAAGCAATGAAGATGAGCAGAAACACCACATCTCTGCATTTCCTGTTGTG
JMSF028P04+           AGCCACCCAGAAAGCAATGAAGANGAGCAGAAACNNCACATCTCTGCATTTCCTGTTGTG
JMSF020F02+           AGCCACCCAGAAAGCAATGAAGATGAGCAGAAACACCACATCTCTGCATTTCCTGTTGTG
                      ____________________________________________________________
consensus             AGCCACCCAGAAAGCAATGAAGATGAGCAGAAACACCACATCTCTGCATTTCCTGTTGTG
 
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JMFS045F09+           CTTTATAATCCCA                                               
JMSF026D12+           CTTTATAATCCCATCACCACTACTCACTTCCCCATTCCCATCACTTGAAGGGTACTTCCC
JMSF019B04+           CTTTATAATCCCATCACCACTACTCACTTCCCCATTCCCATCACTTGAAGGGTACTTCCC
JMSF028P04+           CTTTATAATCCCATCACCACTACTCACTTCCCCATTCCCATCACTTGAAGGGTACTTCCC
JMSF020F02+           CTTTATAATCCCATCACCACTACTCACTTCCCCATTCCCATCACTTGAAGGGTACTTCCC
                      ____________________________________________________________
consensus             CTTTATAATCCCATCACCACTACTCACTTCCCCATTCCCATCACTTGAAGGGTACTTCCC
 
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JMSF026D12+           AATCACAGCTCCCAATGGCCCTCTC                                   
JMSF019B04+           AATCACAGCTCCCAATGGCCCTCTCATTATATTCCCTTATGTATTGATCTATATCTATAC
JMSF028P04+           AATCACAGCTCCCAATGGCCCTCTC                                   
JMSF020F02+           AATCACAGCTCCCAATGGCCCTCTCATTATATTCCCTTATGTATTGATCTATATCTATAC
                      ____________________________________________________________
consensus             AATCACAGCTCCCAATGGCCCTCTCATTATATTCCCTTATGTATTGATCTATATCTATAC
 
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JMSF019B04+           ACACACACAAACAAACGACC                                        
JMSF020F02+           ACACACACAAACAAACAAACACTCCCTCCTGTAAGCGTAGAACAAAAGAAAAAAAGGGTC
                      ____________________________________________________________
consensus             ACACACACAAACAAACGACCACTCCCTCCTGTAAGCGTAGAACAAAAGAAAAAAAGGGTC