Contig 003649:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019N15Sequence496003649 (2)gb|KDO63181.1|2e-60hypothetical protein CISIN_1g029107mg [Citrus sinensis]728003649 (2)ref|XP_009765801.1|6e-87PREDICTED: histone chaperone ASF1B-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF019N15-                                                                     A
                      ____________________________________________________________
consensus                                                                        A
 
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rJMSF019N15-          ATGGTAAAACCTGGGTTTTTTTAAAAAAAAAACATGGTACATGCACCTGATCCGATTAAT
                      ____________________________________________________________
consensus             ATGGTAAAACCTGGGTTTTTTTAAAAAAAAAACATGGTACATGCACCTGATCCGATTAAT
 
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rJMSF019N15-          GAATTCTAGCCACTTACAAACGAAACAAAAGATTTAGTTCAAGATGCTTTAGCACACCAC
                      ____________________________________________________________
consensus             GAATTCTAGCCACTTACAAACGAAACAAAAGATTTAGTTCAAGATGCTTTAGCACACCAC
 
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rJMSF019N15-          TATCTTCATGCCATAAACACAGTAAGATTGGTGTGACAGACAAAAACAGAGTTACATAGC
                      ____________________________________________________________
consensus             TATCTTCATGCCATAAACACAGTAAGATTGGTGTGACAGACAAAAACAGAGTTACATAGC
 
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rJMSF019N15-          AATTCTACAAGATGATGAAGAGCTACAGACCCCTCAAACTGAGATGTAAGAAAAGAAGAT
                      ____________________________________________________________
consensus             AATTCTACAAGATGATGAAGAGCTACAGACCCCTCAAACTGAGATGTAAGAAAAGAAGAT
 
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rJMSF019N15-          GGTTAATGTCCCTGTCCATCATTGGTGTGGTTTTGAGTCAAACAAGGCAGCTCTTCTTCA
                      ____________________________________________________________
consensus             GGTTAATGTCCCTGTCCATCATTGGTGTGGTTTTGAGTCAAACAAGGCAGCTCTTCTTCA
 
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rJMSF019N15-          TTTCCTTCTGCTCCAGTCACATGATCAGGTGGAGGGGTTTGTTCACTGCTTTCATTATTT
                      ____________________________________________________________
consensus             TTTCCTTCTGCTCCAGTCACATGATCAGGTGGAGGGGTTTGTTCACTGCTTTCATTATTT
 
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rJMSF019N15-          TCAGGGTGGAAGTTAATGGGGAACTTTGTTACTCTAGGCTTGTCCGATAGTATGTTTCTT
                      ____________________________________________________________
consensus             TCAGGGTGGAAGTTAATGGGGAACTTTGTTACTCTAGGCTTGTCCGATAGTATGTTTCTT
 
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rJMSF019N15-          TGAACCCTGTCAACTAATACCTTCTGTGGCGGTTCTTCTCTCAGCTGCTCATCGTCGTAA
                      ____________________________________________________________
consensus             TGAACCCTGTCAACTAATACCTTCTGTGGCGGTTCTTCTCTCAGCTGCTCATCGTCGTAA
 
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rJMSF019N15-          TCATTGTTCACATAGTACCCCACTCGTACAAATTCCTGGTTCAAATAGGAGCCGGTCAAC
JMSF019N15+                                                       ATAGGAGCCGGTCAAC
                      ____________________________________________________________
consensus             TCATTGTTCACATAGTACCCCACTCGTACAAATTCCTGGTTCAAATAGGAGCCGGTCAAC
 
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rJMSF019N15-          AGAAGGACAGTCACACCGATTATATCTTCTTCCCGGATTTTTGAGGGATCCGGGGGGTCT
JMSF019N15+           AGAAGGACAGTCACACCGATTATATCTTCTTCCCGGATTTTTGAGGGATCCGGGGGGTCT
                      ____________________________________________________________
consensus             AGAAGGACAGTCACACCGATTATATCTTCTTCCCGGATTTTTGAGGGATCCGGGGGGTCT
 
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rJMSF019N15-          GCTTGCAAGATAAAACGGTAGTTTCCAATATTAACTGGCCCAACAAGGACACTTTCAAGA
JMSF019N15+           GCTTGCAAGATAAAACGGTAGTTTCCAATATTAACTGGCCCAACAAGGACACTTTCAAGA
                      ____________________________________________________________
consensus             GCTTGCAAGATAAAACGGTAGTTTCCAATATTAACTGGCCCAACAAGGACACTTTCAAGA
 
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rJMSF019N15-          AGTTGATCATAAGTTTCATCCTCAGCGGATCCAACATAGATAAGTTTCCATTCCAAATCG
JMSF019N15+           AGTTGATCATAAGTTTCATCCTCAGCGGATCCAACATAGATAAGTTTCCATTCCAAATCG
                      ____________________________________________________________
consensus             AGTTGATCATAAGTTTCATCCTCAGCGGATCCAACATAGATAAGTTTCCATTCCAAATCG
 
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rJMSF019N15-          TCTTTGA                                                     
JMSF019N15+           TCTTTGAGAGGAGCGACGCACTCGTAGGAGATTTCAAACTGGAAAGGGGACAAAAACGGC
                      ____________________________________________________________
consensus             TCTTTGAGAGGAGCGACGCACTCGTAGGAGATTTCAAACTGGAAAGGGGACAAAAACGGC
 
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JMSF019N15+           GCCGGATTGTCCAACACAGACACGTTCGTGAGGTTCACTGCGCTCATTGTATTGAAGCAA
                      ____________________________________________________________
consensus             GCCGGATTGTCCAACACAGACACGTTCGTGAGGTTCACTGCGCTCATTGTATTGAAGCAA
 
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JMSF019N15+           CTAGTGGCGAAAAGCTCTGTATGTTCTCGGAGTCCTTAGCCTGAGATTTCTGGAAGACGA
                      ____________________________________________________________
consensus             CTAGTGGCGAAAAGCTCTGTATGTTCTCGGAGTCCTTAGCCTGAGATTTCTGGAAGACGA
 
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JMSF019N15+           TTAGGGATTCAGAAACCTTCATGGAATCCTTCAAAATGCTACGAGGGTTGCTAAGGAAAG
                      ____________________________________________________________
consensus             TTAGGGATTCAGAAACCTTCATGGAATCCTTCAAAATGCTACGAGGGTTGCTAAGGAAAG
 
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JMSF019N15+           GCCAGCAGGAGAAAAATATTTGAACAAGACGACGACGATGAGTGTGGGAAGAGCTCGGTC
                      ____________________________________________________________
consensus             GCCAGCAGGAGAAAAATATTTGAACAAGACGACGACGATGAGTGTGGGAAGAGCTCGGTC