Contig 003643:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018N07Sequence441003643 (2)dbj|BAO57282.1|5e-69POZ/BTB containing protein [Ipomoea nil]738013968 (2)dbj|BAO57282.1|2e-115POZ/BTB containing protein [Ipomoea nil]
JMSF022K01Sequence677003643 (2)dbj|BAO57282.1|2e-116POZ/BTB containing protein [Ipomoea nil]754013968 (2)dbj|BAO57282.1|3e-119POZ/BTB containing protein [Ipomoea nil]

Alignment

This contig is upended


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JMSF022K01+                                                     CTATACATGAAATTCAGG
                      ____________________________________________________________
consensus                                                       CTATACATGAAATTCAGG
 
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JMSF022K01+           AGCTCCATCAGTGCAGCTTCNTCAGAAGCATGAATTTGAAGGGTGACTNGTCTCTGCTCT
                      ____________________________________________________________
consensus             AGCTCCATCAGTGCAGCTTCNTCAGAAGCATGAATTTGAAGGGTGACTNGTCTCTGCTCT
 
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JMSF022K01+           GATTCCTTCATCCCATTTGAGAAAAGCTTATAAAAGAATGGACTTTTTGCTGCCAGAATA
                      ____________________________________________________________
consensus             GATTCCTTCATCCCATTTGAGAAAAGCTTATAAAAGAATGGACTTTTTGCTGCCAGAATA
 
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JMSF022K01+           GGAGAGCTGATATGCAATGTTTTGACTTTTGTAACCCTTGAATCCATGTTCCAATCTGAA
                      ____________________________________________________________
consensus             GGAGAGCTGATATGCAATGTTTTGACTTTTGTAACCCTTGAATCCATGTTCCAATCTGAA
 
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JMSF022K01+           TCTTCACTGTTGGGAGCTTCATCTCCCGATTGTACTTCTTCAATCATTGCAACCACCGAC
                      ____________________________________________________________
consensus             TCTTCACTGTTGGGAGCTTCATCTCCCGATTGTACTTCTTCAATCATTGCAACCACCGAC
 
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JMSF022K01+           TCTTCTTGATTTTCAGTATCAACATCATCAGGATCAATCTGGTGACAAGTAAGAATCTGC
                      ____________________________________________________________
consensus             TCTTCTTGATTTTCAGTATCAACATCATCAGGATCAATCTGGTGACAAGTAAGAATCTGC
 
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JMSF022K01+           TCCTCTGGGCATATGGTGATATCCAAAGCGTTTTCATTTTTGGTATCCTCCTTCCGACGC
JMSF018N07+                                       CGTTTTCATTTTTGGTATCCTCCTTCCGACGC
                      ____________________________________________________________
consensus             TCCTCTGGGCATATGGTGATATCCAAAGCGTTTTCATTTTTGGTATCCTCCTTCCGACGC
 
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JMSF022K01+           TTGCGGTGGCGAGCCCAATCCGCGAGGCTCTGACAGCCCTCGGAGTCGGAAAGCTGGTCG
JMSF018N07+           TTGCGGTGGCGAGCCCAATCCGCGAGGCTCTGACAGCCCTCGGAGTCGGAAAGCTGGTCG
                      ____________________________________________________________
consensus             TTGCGGTGGCGAGCCCAATCCGCGAGGCTCTGACAGCCCTCGGAGTCGGAAAGCTGGTCG
 
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JMSF022K01+           GACGAGTCGGCAACAATCTCGATCCGCAGGAGGCGGTCGGAGAAGTTGCTATCGTTGAAG
JMSF018N07+           GACGAGTCGGCAACAATCTCGATCCGCAGGAGGCGGTCGGAGAAGTTGCTATCGTTGAAG
                      ____________________________________________________________
consensus             GACGAGTCGGCAACAATCTCGATCCGCAGGAGGCGGTCGGAGAAGTTGCTATCGTTGAAG
 
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JMSF022K01+           GCGAAGGCGAAATCCGGCTGGCGGCCGGTGGTAGGAG-GTAATCAGGGTCCATAACCGCC
JMSF018N07+           GCGAAGGCGAAATCCGGCTGGCGGCCGGTGGTAGGAGAGTAATCAGGGTCCATAACCGCC
                      ____________________________________________________________
consensus             GCGAAGGCGAAATCCGGCTGGCGGCCGGTGGTAGGAGAGTAATCAGGGTCCATAACCGCC
 
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JMSF022K01+           GTTCTAGGGTCAAACAGGTCCAAGTTCCTATCCTTCATACTCTATTCTCTCTCCAAAATT
JMSF018N07+           GTTCTAGGGTCAAACAGGTCCAAATTCCTATCCTTCATACTCTATTCTCTCTCCAAAATT
                      ____________________________________________________________
consensus             GTTCTAGGGTCAAACAGGTCCAAGTTCCTATCCTTCATACTCTATTCTCTCTCCAAAATT
 
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JMSF022K01+           TAGGTTTCACTGCTAGTAACGAGTACAAATAGCAATTAAACTTTCGCCGAGCTGCCG   
JMSF018N07+           TAGGTTTCACTGCTAGTAACGAGTACAAATAGCAATTAAACTTTCGCCGAGCTGCCGCCC
                      ____________________________________________________________
consensus             TAGGTTTCACTGCTAGTAACGAGTACAAATAGCAATTAAACTTTCGCCGAGCTGCCGCCC