Contig 003639:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF042J17+                                                  AAATATAAATCCATATGTAAA
                      ____________________________________________________________
consensus                                                    AAATATAAATCCATATGTAAA
 
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JMSF042J17+           TAATCTTAATACTATATCAGGATCAGCATTTTCATTACATATAAATCTAGGATATTTAGT
                      ____________________________________________________________
consensus             TAATCTTAATACTATATCAGGATCAGCATTTTCATTACATATAAATCTAGGATATTTAGT
 
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JMSF042J17+           TATTTTTCTACTTCTTAATATTGTATTATCAGTTTTATAATCATAAAATTTATTAATAAT
                      ____________________________________________________________
consensus             TATTTTTCTACTTCTTAATATTGTATTATCAGTTTTATAATCATAAAATTTATTAATAAT
 
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JMSF027N10+                                                  ATCAGCCATACTAGTGGATGT
JMSF042J17+           TTCATACATTTCTATTAAATCTTCTGAATGTTTTAGCTTATCAGCCATACTAGTGGATGT
JMSF023M15+                                                                 GGATGT
JMSF049B08+                               CTTCTGAATGTTTTAGCTTATCAGCCATACTAGNGGATGT
                      ____________________________________________________________
consensus             TTCATACATTTCTATTAAATCTTCTGAATGTTTTAGCTTATCAGCCATACTAGTGGATGT
 
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JMSF027N10+           TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGTGTTTT
JMSF042J17+           TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGNGTTTT
JMSF023M15+           TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGTGTTTT
JMSF049B08+           TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGTGTTTT
                      ____________________________________________________________
consensus             TTCAGGGAAAATTGTAAGTTTGGGAAAAGGATTTATAGGCATGGATTCATAGGGTGTTTT
 
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JMSF027N10+           CAATTTTTTCATCCTCTTATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
JMSF042J17+           CAATTTTTTCATCCTCTTATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
JMSF023M15+           CAATTTTTTCATCCTCTCATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
JMSF049B08+           CAATTTTTTCATCCTCTTATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
JMSF018D11+                                    TCAAAGGTTTTTTCTAATCNTTCTATTCTTTTCCT
                      ____________________________________________________________
consensus             CAATTTTTTCATCCTCTTATAGTCTTCAAAGGTTTTTTCTAATCTTTCTATTCTTTTCCT
 
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JMSF027N10+           ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF042J17+           ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF023M15+           ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF049B08+           ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF016B14+                                   TTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
JMSF018D11+           ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
                      ____________________________________________________________
consensus             ATCTTCACTATTTCTTCCTTTTAATTCTTCAATACTCTCAGTTATATATTGCTCCATCCT
 
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JMSF027N10+           ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF042J17+           ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF023M15+           ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF049B08+           ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF016B14+           ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
JMSF018D11+           ATCAATTGNTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
                      ____________________________________________________________
consensus             ATCAATTGTTGTCATGCCTTCTAATATTTGTTTTCCATTTTTTTTTTATCTTTTATAATT
 
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JMSF027N10+           ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF042J17+           ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF023M15+           ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF049B08+           ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF016B14+           ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
JMSF018D11+           ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
                      ____________________________________________________________
consensus             ATATTAAGTTTTGAAGTTTTGATTGTGGTTTTAGGTCCACCATGATGAACTCCGATTTCT
 
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JMSF027N10+           TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCGA
JMSF042J17+           TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF023M15+           TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF049B08+           TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF016B14+           TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF002B06+                                          TGCTGGTAGGTGTTTACAAGCTCGTCCCA
JMSF053M15+                                             TGGTAGGTGTTTACAAGCTCGTCCCA
JMSF018D11+           TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
                      ____________________________________________________________
consensus             TCGGCTTTCTTTAGTGATTCCACCTTCCTCCTGCTGGTAGGTGTTTACAAGCTCGTCCCA
 
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JMSF027N10+           TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF042J17+           TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF023M15+           TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF049B08+           TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF016B14+           TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF002B06+           TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
JMSF053M15+           TTTCTCCAATCCGACCGATCNGAAGNGGTTTCCAGANTGTTAGGTATGATGANGAGTGAT
JMSF018D11+           TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
                      ____________________________________________________________
consensus             TTTCTCCAATCCGACCGATCTGAAGTGGTTTCCAGATTGTTAGGTATGATGATGAGTGAT
 
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JMSF027N10+           TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF042J17+           TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF023M15+           TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF049B08+           TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF016B14+           TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF002B06+           TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF053M15+           TGAAGGGGAAGGCTTCGAAGCCNGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
JMSF018D11+           TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
                      ____________________________________________________________
consensus             TGAAGGGGAAGGCTTCGAAGCCTGGATTTTTGGATGATATTTAAGTAGGAAGAGTTTGAA
 
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JMSF027N10+           TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF042J17+           TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF023M15+           TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF049B08+           TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF016B14+           TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF002B06+           TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF053M15+           TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
JMSF018D11+           TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
                      ____________________________________________________________
consensus             TCCCTCCCTCCTGAATATCATATTCGATCTAAATCTACTAGAAGAACCCAAGTTCATGTT
 
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JMSF027N10+           GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCG  
JMSF042J17+           GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCG  
JMSF023M15+           GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGT 
JMSF049B08+           GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC
JMSF016B14+           GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC
JMSF002B06+           GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC
JMSF053M15+           GACGGAATTTCTCTTTCAAAGATTTTTNTAACTCAAATAANGTTTGNGTCTNTGTGCGT 
JMSF018D11+           GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC
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consensus             GATGGAATTTCTCTTTCAAAGATTTTTCTAACTCAAATAATGTTTGTGTCTTTGTGCGTC