| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN029J20 | Sequence | 599 | 003637 (8) | ref|XP_006361833.1| | 4e-109 | PREDICTED: hypersensitive-induced response protein 2-like [Solanum tuberosum] | |||||
| JMFS062C03 | Sequence | 616 | 003637 (8) | ref|XP_006361833.1| | 2e-104 | PREDICTED: hypersensitive-induced response protein 2-like [Solanum tuberosum] | |||||
| JMSF017N16 | Sequence | 504 | 003637 (8) | ref|XP_009596453.1| | 4e-73 | PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis | 796 | 003637 (8) | ref|XP_009596453.1| | 3e-128 | PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis |
| JMSF019J12 | Sequence | 519 | 003637 (8) | ref|XP_009596453.1| | 2e-91 | PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis | 782 | 003637 (8) | ref|XP_009596453.1| | 7e-126 | PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis |
| JMSF027A18 | Sequence | 635 | 003637 (8) | ref|XP_006361833.1| | 1e-79 | PREDICTED: hypersensitive-induced response protein 2-like [Solanum tuberosum] | 767 | 003637 (8) | ref|XP_009779188.1| | 2e-98 | PREDICTED: hypersensitive-induced response protein 2 [Nicotiana sylvestris] ref |
This contig is upended
. : . : . : . : . : . :
rJMSF027A18- ATATCCCACAATGCATGTGTACATATTAACACGTGGATGATGGACATATGGC
____________________________________________________________
consensus ATATCCCACAATGCATGTGTACATATTAACACGTGGATGATGGACATATGGC
. : . : . : . : . : . :
rJMSF027A18- ATACTCTAACTAAAAGTTTCAATATTAAGCACTCGAGCAATTACCTTTCGTCCAGACTAA
rJMSF019J12- ATTACCTTTCGTCCAGACTAA
rJMSF017N16- GACTAA
____________________________________________________________
consensus ATACTCTAACTAAAAGTTTCAATATTAAGCACTCGAGCAATTACCTTTCGTCCAGACTAA
. : . : . : . : . : . :
rJMSF027A18- AAACACAAATCCTAAAATCCATGGGAATATACAATAAAGAGGAAAGTAAAGGCATAGTCA
rJMSF019J12- AAACACAAATCCTAAAATCCATGGGAATATACAATAAAGAGGAAAGTAAAGGCATAGTCA
rJMSF017N16- AAACACAAATCCTAAAATCCATGGGAATATACAATAAAGAGGAAAGTAAAGGCATAGTCA
____________________________________________________________
consensus AAACACAAATCCTAAAATCCATGGGAATATACAATAAAGAGGAAAGTAAAGGCATAGTCA
. : . : . : . : . : . :
rJMSF027A18- GGTATATATCAAACCACAAGCTTTGAACAACTGTAAGTAGAAAGTAGCATATGAAGTTAC
rJMSF019J12- GGTATATATCAAACCACAAGCTTTGAACAACTGTAAGTAGAAAGTAGCATATGAAGTTAC
rJMSF017N16- GGTATATATCAAACCACAAGCTTTGAACAACTGTAAGTAGAAAGTAGCATATGAAGTTAC
____________________________________________________________
consensus GGTATATATCAAACCACAAGCTTTGAACAACTGTAAGTAGAAAGTAGCATATGAAGTTAC
. : . : . : . : . : . :
rJMSF027A18- CACAAATCCCCGTCAAACTAAGGTTTAATACTACTGGCCTGAAGAAGACCCTCCCGAATT
rJMSF019J12- CACAAATCCCCGTCAAACTAAGGTTTAATACTACTGGCCTGAAGAAGACCCTCCCGAATT
rJMSF017N16- CACAAATCCCCGTCAAACTAAGGTTTAATACTACTGGCCTGAAGAAGACCCTCCCGAATT
____________________________________________________________
consensus CACAAATCCCCGTCAAACTAAGGTTTAATACTACTGGCCTGAAGAAGACCCTCCCGAATT
. : . : . : . : . : . :
rJMSF027A18- TGTGAGGAAATGTCTTTCACAGCACCTGGACCATGTGGGATAAACACAGAAGAGGACTTT
rJMSF019J12- TGTGAGGAAATGTCTTTCACAGCACCTGGACCATGTGGGATAAACACAGAAGAGGACTTT
rJMSF017N16- TGTGAGGAAATGTCTTTCACAGCACCTGGACCATGTGGGATAAACACAGAAGAGGACTTT
____________________________________________________________
consensus TGTGAGGAAATGTCTTTCACAGCACCTGGACCATGTGGGATAAACACAGAAGAGGACTTT
. : . : . : . : . : . :
rJMSF027A18- GAAGATGAGCCAATCTCCTTCATTGTGTCGAAATATTGAGTCACCAGAACCATGTCCATG
rJMSF019J12- GAAGATGAGCCAATCTCCTTCATTGTGTCGAAATATTGAGTCACCAGAACCATGTCCATG
rJMSF017N16- GAAGATGAGCCAATCTCCTTCATTGTGTCGAAATATTGAGTCACCAGAACCATGTCCATG
____________________________________________________________
consensus GAAGATGAGCCAATCTCCTTCATTGTGTCGAAATATTGAGTCACCAGAACCATGTCCATG
. : . : . : . : . : . :
rJMSF027A18- ATGTCTTTTGCTGTTGTCCCGGGAACATTCTATGAGAATGCAAGGACACTGTCTCTTAGC
rJMSF019J12- ATGTCTTTTGCTGTTGTCCCGGGAACATTCTCTGAGAATGCAAGGACACTGTCTCTTAGC
rJMSF017N16- ATGTCTTTTGCTGTTGTCCCGGGAACATTCTCTGAGAATGCAAGGACACTGTCTCTTAGC
____________________________________________________________
consensus ATGTCTTTTGCTGTTGTCCCGGGAACATTCTCTGAGAATGCAAGGACACTGTCTCTTAGC
. : . : . : . : . : . :
rJMSF027A18- CCATCCACAATCGCTTGGCGCTGACGTGCAATGCCAAGTCCTGACAGGTATTTTGACTCT
rJMSF019J12- CCATCCACAATCGCTTGGCGCTGACGTGCAATGCCAAGTCCTGACAGGTATTTTGACTCT
rJMSF017N16- CCATCCACAATCGCTTGGCGCTGACGTGCAATGCCAAGTCCTGACAGGTATTTTGACTCT
____________________________________________________________
consensus CCATCCACAATCGCTTGGCGCTGACGTGCAATGCCAAGTCCTGACAGGTATTTTGACTCT
. : . : . : . : . : . :
rJMSF027A18- GCTTCACCCTCAGCTTTCTTGATCTGCAGTATCTTCTCAGCTTCAGCCTTTTCATTTGCG
rJMSF019J12- GCTTCACCCTCAGCTTTCTTGATCTGCAGTATCTTCTCAGCTTCAGCCTTTTCATTTGCG
rJMSF017N16- GCTTCACCCTCAGCTTTCTTGATCTGCAGTATCTTCTCAGCTTCAGCCTTTTCATTTGCG
____________________________________________________________
consensus GCTTCACCCTCAGCTTTCTTGATCTGCAGTATCTTCTCAGCTTCAGCCTTTTCATTTGCG
. : . : . : . : . : . :
rJMSF027A18- GCAACCCTAAGCCTTGCAGCAGCATTTATCTCATTCATTGCCCTCTTTACATGAATATCG
rJMSF019J12- GCAACCCTAAGCCTTGCAGCAGCATTTATCTCATTCATTGCCCTCTTTACATGAATATCG
rJMSF017N16- GCAACCCTAAGCCTTGCAGCAGCATTTATCTCATTCATTGCCCTCTTTACATGAATATCG
JMFN029J20+ GCCTTGCAGCAGCATTTATCTCATTCATTGCCCTCTTTACATGAATATCG
JMFS062C03+ CTCATTCATTGCCCTCTTTACATGAATATCG
JMSF027A18+ CAGCAGCATTTATCTCATTCATTGCCCTCTTTACATGAATATCG
____________________________________________________________
consensus GCAACCCTAAGCCTTGCAGCAGCATTTATCTCATTCATTGCCCTCTTTACATGAATATCG
. : . : . : . : . : . :
rJMSF027A18- GGCTCTATATCCACAATGAGGGTCTGGACAATCTCAAATCCATAGGTAGACATAGCCTTC
rJMSF019J12- GGCTCTATATCCACAATGAGGGTCTGGACAATCTCAAATCCATAGGTAGACATAGCCTTC
rJMSF017N16- GGCTCTATATCCACAATGAGGGTCTGGACAATCTCAAATCCATAGGTAGACATAGCCTTC
JMFN029J20+ GGCTCTATATCCACAATGAGGGTCTGGACAATCTCAAATCCATAGGTAGACATAGCCTTC
JMSF019J12+ ACAATGAGGGTCTGGACAATCTCAAATCCATAGGTAGACATAGCCTTC
JMFS062C03+ GGCTCTATATCCACAATGAGGGTCTGGACAATCTCAAATCCATAGGTAGACATAGCCTTC
JMSF027A18+ GGCTCTATATCCACAATGAGGGTCTGGACAATCTCAAATCCATAGGTAGACATAGCCTTC
____________________________________________________________
consensus GGCTCTATATCCACAATGAGGGTCTGGACAATCTCAAATCCATAGGTAGACATAGCCTTC
. : . : . : . : . : . :
rJMSF027A18- TCTAGCTCATCCTCCACTGCTTTAGCTATTTCATTCTTCTGCTCAA
rJMSF019J12- TCTAGCTCATCCTCCACTGCTTTAGCTATTTCATTCTTCTGCTCAAATGCAGCATCCAAA
rJMSF017N16- TCTAGCTCATCCTCCACTGCTTTAGCTATTTCATTCTTCTGCTCAAATGCAGCATCCAAA
JMFN029J20+ TCTAGCTCATCCTCCACTGCTTTAGCTATTTCATTCTTCTGCTCAAATGCAGCATCCAAA
JMSF019J12+ TCTAGCTCATCCTCCACTGCTTTAGCTATTTCATTCTTCTGCTCAAATGCAGCATCCAAA
JMFS062C03+ TCTAGCTCATCCTCCACTGCTTTAGCTATTTCATTCTTCTGCTCAAATGCAGCATCCAAA
JMSF027A18+ TCTAGCTCATCCTCCACTGCTTTAGCTATTTCATTCTTCTGCTCAAATGCAGCATCCAAA
JMSF017N16+ TTCTGCTCAAATGCAGCATCCAAA
____________________________________________________________
consensus TCTAGCTCATCCTCCACTGCTTTAGCTATTTCATTCTTCTGCTCAAATGCAGCATCCAAA
. : . : . : . : . : . :
rJMSF019J12- TTCAATCTAGGCACACTGGCCCGTATGACATCAAATACATATGATTGGATCTGTGACTTT
rJMSF017N16- TTCAATCTAGGCACACTGGCCCGTATGACATCAAATACATATGATTGGATCTGTGACTTT
JMFN029J20+ TTCAATCTAGGCACACTGGCCCGTATGACATCAAATACATATGATTGGATCTGTGACTTT
JMSF019J12+ TTCAATCTAGGCACACTGGCCCGTATGACATCAAATACATATGATTGGATCTGTGACTTT
JMFS062C03+ TTCAATCTAGGCACACTGGCCCGTATGACATCAAATACATATGATTGGATCTGTGACTTT
JMSF027A18+ TTCAATCTAGGCACACTGGCCCGTATGACATCAAATACATATGATTGGATCTGTGACTTT
JMSF017N16+ TTCAATCTAGGCACACTGGCCCGTATGACATCAAATACATATGATTGGATCTGTGACTTT
____________________________________________________________
consensus TTCAATCTAGGCACACTGGCCCGTATGACATCAAATACATATGATTGGATCTGTGACTTT
. : . : . : . : . : . :
rJMSF019J12- GTGTTCGAAAGCTGGTAAAATGCATCAGAAG
rJMSF017N16- GTGTTCGAAAGCTGGTAAAATGCATCANAAGCCTTTTCTGCCA
JMFN029J20+ GTGTTCGAAAGCTTGTAAAATGCATCAGAAGCCTTTTCTGCCAAGGCTCGGTACTGAATG
JMSF019J12+ GTGTTCGAAAGCTTGTAAAATGCATCAGAAGCCTTTTCTGCCAAGGCTCGGTACTGAATG
JMFS062C03+ GTGTTCGAAAGCTTGTAAAATGCATCAGAAGCCTTTTCTGCCAAGGCTCGGTACTGAATG
JMSF027A18+ GTGTTCGAAAGCTTGTAAAATGCATCAGAAGCCTTTTCTGCCAAGGCTCGGTACTGAATG
JMSF017N16+ GTGTTCGAAAGCTTGTAAAATGCATCAGAAGCCTTTTCTGCCAAGGCTCGGTACTGAATG
____________________________________________________________
consensus GTGTTCGAAAGCTTGTAAAATGCATCAGAAGCCTTTTCTGCCAAGGCTCGGTACTGAATG
. : . : . : . : . : . :
JMFN029J20+ GATGCAACCACAGTCACAAAGACATTGTCCTTTGTTTTTGTTTCACAACGAACATCAATC
JMSF019J12+ GATGCAACCACAGTCACAAAGACATTGTCCTTTGTTTTTGTTTCACAACGAACATCAATC
JMFS062C03+ GATGCAACCACAGTCACAAAGACATTGTCCTTTGTTTTTGTTTCACAACGAACATCAATC
JMSF027A18+ GATGCAACCACAGTCACAAAGACATTGTCCTTTGTTTTTGTTTCACAACGAACATCAATC
JMSF017N16+ GATGCAACCACAGTCACAAAGACATTGTCCTTTGTTTTTGTTTCACAACGAACATCAATC
____________________________________________________________
consensus GATGCAACCACAGTCACAAAGACATTGTCCTTTGTTTTTGTTTCACAACGAACATCAATC
. : . : . : . : . : . :
JMFN029J20+ TGTTGCACACGCAGAGAAAGAGTACCAGCAGATTGATATCCCAAACACCAAGGAACACAA
JMSF019J12+ TGTTGCACACGCAGAGAAAGAGTACCAGCAGATTGATATCCCAAACACCAAGGAACACAA
JMFS062C03+ TGTTGCACACGCAGAGAAAGAGTACCAGCAGATTGATATCCCAAACACCAAGGAACACAA
JMSF027A18+ TGTTGCACACGCAGAGAAAGAGTA-CAGCAGATTGATATCCCAAACACCAAGGAACACAA
JMSF017N16+ TGTTGCACACGCAGAGAAAGAGTACCAGCAGATTGATATCCCAAACACCAAGGAACACAA
____________________________________________________________
consensus TGTTGCACACGCAGAGAAAGAGTACCAGCAGATTGATATCCCAAACACCAAGGAACACAA
. : . : . : . : . : . :
JMFN029J20+ TGACACCCAGGCTCCAACACATCATCAAATTTGCCAAAGTGCTCCATCACAGCCACAGTG
JMSF019J12+ TGACACCCAGGCTCCAACACATCATCAAATTTGCCAAAGTGCTCCATCACAGCCACAGTG
JMFS062C03+ TGACACCCAGGCTCCAACACATCATCAAATTTGCCAAAGTGCTCCATCACAGCCACAGTG
JMSF027A18+ TGACACCCAGGCTCCAACACATCATCAAATTTGCCAAAGTGCTCCATCACAGCCACAGTG
JMSF017N16+ TGACACCCAGGCTCCAACACATCATCAAATTTGCCAAAGTGCTCCATCACAGCCACAGTG
____________________________________________________________
consensus TGACACCCAGGCTCCAACACATCATCAAATTTGCCAAAGTGCTCCATCACAGCCACAGTG
. : . : . : . : . : . :
JMFN029J20+ GACTGATCTACTTGAAGACATCCAAGTGATTGACCCATTGTTCAAACCTTCGAAGAAAAG
JMSF019J12+ GACTAATCTACTTGAAGACATCCAAGTGATTGACCCATTGTTCAAACCTTCGAAGAAAAG
JMFS062C03+ GACTGATCTACTTGAAGACATCCAAGTGATTGACCCATTGTTCAAACCTTCGAAGAAAAG
JMSF027A18+ GACTGATCTACTTGAAGACATCCAAGTGATTGACCCATTGTTCAAACCTTCGAAGAAAAG
JMSF017N16+ GACTGATCTACTTGAAGACATCCAAGTGATTGACCCATTGTTCAAACCTTCGAAGAAAAG
____________________________________________________________
consensus GACTGATCTACTTGAAGACATCCAAGTGATTGACCCATTGTTCAAACCTTCGAAGAAAAG
. : . : . : . : . : . :
JMFN029J20+ ACAGCAACGAGGGAGTTAGAAATTTCCGGCAACTTTCCTGGCGGTAAAGTAGGGTACAAT
JMSF019J12+ ACAGCAACGAGGGAGTTAGAAATTTCCGGCAACTTTCCTGGCGGTAAAGT
JMFS062C03+ ACAGCAACGAGGGAGTTAGAAATTTCCGGCAACTTTCCTGGCGGTAAAGTAGGGTACAAT
JMSF027A18+ ACAGCAACGAGGGAGTTAGAAATTTCCGGCAACTTTCCTGGCGGTAAAGTAGGGTACAAT
JMSF017N16+ ACAGCAACGAGGGAGTTAGAAATTTCCGGCAACTTTCCTGGCGGTAAAGTAGGGTACAAT
____________________________________________________________
consensus ACAGCAACGAGGGAGTTAGAAATTTCCGGCAACTTTCCTGGCGGTAAAGTAGGGTACAAT
. : . : . : . : . : . :
JMFN029J20+ TAGAATTTA
JMFS062C03+ TAGAATTTACAGAGTATTTATACGCGGGTAGGAATTAGAATACCA
JMSF027A18+ TAGAATTTACAGAGTATTTATACGCGGGTAGGAATTAGAATACCA
JMSF017N16+ TAGAATTTACAGAGTATTTATACGTGGGTAGGAATTAGAATACCATACCACGAGCTGTTC
____________________________________________________________
consensus TAGAATTTACAGAGTATTTATACGCGGGTAGGAATTAGAATACCATACCACGAGCTGTTC